Guide to the Human Genome
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Name: LOC100291232 Sequence: fasta or formatted (528aa) NCBI GI: 239751418
Description:

PREDICTED: hypothetical protein XP_002347841

Referenced in:

Inositol Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         38           2
 C cysteine            4.7         25           1
 D aspartate           4.9         26           2
 E glutamate           7.8         41           2
 F phenylalanine       4.5         24           2
 G glycine             5.3         28           2
 H histidine           2.7         14           2
 I isoleucine          4.5         24           2
 K lysine              4.7         25           2
 L leucine            12.9         68           2
 M methionine          1.7          9           1
 N asparagine          2.7         14           2
 P proline             5.1         27           2
 Q glutamine           5.7         30           2
 R arginine            6.2         33           1
 S serine              7.2         38           2
 T threonine           3.0         16           2
 V valine              5.1         27           2
 W tryptophan          1.3          7           1
 Y tyrosine            2.7         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347841 
PLEKHM1               0.952   pleckstrin homology domain containing, family M (wit...
LOC100293478          0.805   PREDICTED: similar to pleckstrin homology domain co...
PLEKHM3               0.207   pleckstrin homology domain containing, family M, me...
DEF8                  0.117   differentially expressed in FDCP 8 isoform 1 
C13orf18              0.111   hypothetical protein LOC80183 
KIAA0226              0.086   hypothetical protein LOC9711 isoform 1 
KIAA0226              0.086   hypothetical protein LOC9711 isoform 2 
ARAP1                 0.019   ArfGAP with RhoGAP domain, ankyrin repeat and PH do...
ARAP1                 0.019   ArfGAP with RhoGAP domain, ankyrin repeat and PH do...
ARAP1                 0.019   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
PLEKHO2               0.008   pleckstrin homology domain containing, family O memb...
DAPP1                 0.008   dual adaptor of phosphotyrosine and 3-phosphoinosit...
MAP3K5                0.008   mitogen-activated protein kinase kinase kinase 5 [Hom...
DCDC2B                0.008   doublecortin domain containing 2B 
ARAP2                 0.007   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
PLCG1                 0.007   phospholipase C, gamma 1 isoform a 
PLCG1                 0.007   phospholipase C, gamma 1 isoform b 
RNF40                 0.007   ring finger protein 40 
IKBKE                 0.006   IKK-related kinase epsilon 
APBB2                 0.006   amyloid beta A4 precursor protein-binding, family B,...
CASZ1                 0.006   castor homolog 1, zinc finger isoform a 
CASZ1                 0.006   castor homolog 1, zinc finger isoform b 
PLEKHA1               0.006   pleckstrin homology domain containing, family A (pho...
PLEKHA1               0.006   pleckstrin homology domain containing, family A (pho...
RASA3                 0.006   RAS p21 protein activator 3 
COQ3                  0.005   hexaprenyldihydroxybenzoate methyltransferase [Homo...
PHF16                 0.005   PHD finger protein 16 
PHF16                 0.005   PHD finger protein 16 
HSPG2                 0.005   heparan sulfate proteoglycan 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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