Guide to the Human Genome
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Name: PRG2 Sequence: fasta or formatted (746aa) NCBI GI: 13376339
Description:

plasticity-related protein 2

Referenced in:

Lipid Metabolism
Neurons

Other entries for this name:
alt prot [222aa] proteoglycan 2 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         96           2
 C cysteine            1.5         11           1
 D aspartate           4.0         30           2
 E glutamate           7.1         53          11
 F phenylalanine       3.2         24           2
 G glycine             8.8         66           3
 H histidine           2.5         19           2
 I isoleucine          3.4         25           1
 K lysine              3.8         28           1
 L leucine             9.4         70           3
 M methionine          2.1         16           2
 N asparagine          1.7         13           1
 P proline             9.4         70           3
 Q glutamine           2.8         21           2
 R arginine            5.2         39           2
 S serine              8.3         62           4
 T threonine           4.8         36           2
 V valine              5.9         44           2
 W tryptophan          0.7          5           1
 Y tyrosine            2.4         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plasticity-related protein 2 
LPPR4                 0.375   plasticity related gene 1 
PRG-3                 0.102   plasticity related gene 3 
PRG-3                 0.102   plasticity related gene 3 
PAP2D                 0.091   phosphatidic acid phosphatase type 2d isoform 1 [Hom...
PAP2D                 0.091   phosphatidic acid phosphatase type 2d isoform 2 [Hom...
LPPR2                 0.080   lipid phosphate phosphatase-related protein type 2 [...
PPAP2C                0.037   phosphatidic acid phosphatase type 2C isoform 1 [Homo...
PPAP2A                0.037   phosphatidic acid phosphatase type 2A isoform 2 [Hom...
PPAP2B                0.035   phosphatidic acid phosphatase type 2B 
PPAP2B                0.035   phosphatidic acid phosphatase type 2B 
PPAP2A                0.035   phosphatidic acid phosphatase type 2A isoform 1 [Hom...
PPAP2C                0.034   phosphatidic acid phosphatase type 2C isoform 3 [Hom...
PPAP2C                0.027   phosphatidic acid phosphatase type 2C isoform 2 [Hom...
PELP1                 0.019   proline, glutamic acid and leucine rich protein 1 [...
PRKCSH                0.019   protein kinase C substrate 80K-H isoform 1 
CHIC1                 0.018   cysteine-rich hydrophobic domain 1 
NOLC1                 0.018   nucleolar and coiled-body phosphoprotein 1 
SCAF1                 0.017   SR-related CTD-associated factor 1 
TCOF1                 0.017   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.017   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.017   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.017   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.017   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.017   Treacher Collins-Franceschetti syndrome 1 isoform c ...
BCAN                  0.017   brevican isoform 2 
HMGB1                 0.016   high-mobility group box 1 
SHROOM4               0.016   shroom family member 4 
EHMT2                 0.016   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.016   euchromatic histone-lysine N-methyltransferase 2 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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