Guide to the Human Genome
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Name: ABCA2 Sequence: fasta or formatted (2436aa) NCBI GI: 45446740
Description:

ATP-binding cassette, sub-family A, member 2 isoform a

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [2466aa] ATP-binding cassette, sub-family A, member 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8        191           3
 C cysteine            1.7         41           2
 D aspartate           4.4        106           2
 E glutamate           5.7        139           3
 F phenylalanine       4.6        112           2
 G glycine             7.0        170           2
 H histidine           2.1         52           2
 I isoleucine          4.1        101           2
 K lysine              4.0         98           2
 L leucine            12.1        295           3
 M methionine          2.5         60           2
 N asparagine          3.5         86           2
 P proline             5.8        142           4
 Q glutamine           4.2        103           2
 R arginine            5.3        130           2
 S serine              8.1        198           2
 T threonine           5.3        128           3
 V valine              7.1        172           2
 W tryptophan          1.4         35           1
 Y tyrosine            3.2         77           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family A, member 2 isoform... 
ABCA2                 0.991   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA1                 0.307   ATP-binding cassette, sub-family A member 1 
ABCA4                 0.275   ATP-binding cassette, sub-family A member 4 
ABCA7                 0.254   ATP-binding cassette, sub-family A, member 7 
ABCA12                0.204   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.204   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA3                 0.103   ATP-binding cassette, sub-family A member 3 
ABCA13                0.101   ATP binding cassette, sub-family A (ABC1), member 13...
ABCA5                 0.057   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.057   ATP-binding cassette, sub-family A , member 5 
ABCA9                 0.056   ATP-binding cassette, sub-family A, member 9 
ABCA10                0.055   ATP-binding cassette, sub-family A, member 10 [Homo...
ABCA6                 0.052   ATP-binding cassette, sub-family A, member 6 
ABCA8                 0.047   ATP-binding cassette, sub-family A member 8 
LOC342293             0.029   PREDICTED: similar to hCG18626 
LOC342293             0.029   PREDICTED: similar to hCG18626 
LOC342293             0.029   PREDICTED: similar to hCG18626 
ABCG5                 0.013   ATP-binding cassette sub-family G member 5 
ABCB1                 0.013   ATP-binding cassette, subfamily B, member 1 
ABCB5                 0.012   ATP-binding cassette, sub-family B, member 5 
ABCG1                 0.012   ATP-binding cassette sub-family G member 1 isoform 7...
ABCG1                 0.012   ATP-binding cassette sub-family G member 1 isoform 6...
ABCG1                 0.012   ATP-binding cassette sub-family G member 1 isoform 5...
ABCG1                 0.012   ATP-binding cassette sub-family G member 1 isoform 3...
ABCG1                 0.012   ATP-binding cassette sub-family G member 1 isoform 4...
ABCG1                 0.012   ATP-binding cassette sub-family G member 1 isoform 2...
ABCG2                 0.011   ATP-binding cassette, sub-family G, member 2 
ABCB11                0.011   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB4                 0.011   ATP-binding cassette, subfamily B, member 4 isoform B...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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