Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ATP11B Sequence: fasta or formatted (1177aa) NCBI GI: 62632750
Description:

ATPase, class VI, type 11B

Referenced in:

Amphipath-transporting ATPase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         65           3
 C cysteine            2.0         23           2
 D aspartate           4.2         50           1
 E glutamate           6.5         76           2
 F phenylalanine       5.9         70           3
 G glycine             5.3         62           2
 H histidine           2.5         29           1
 I isoleucine          7.5         88           2
 K lysine              5.2         61           2
 L leucine            10.9        128           3
 M methionine          2.3         27           1
 N asparagine          3.8         45           2
 P proline             3.1         37           2
 Q glutamine           4.2         50           2
 R arginine            4.9         58           3
 S serine              7.6         90           3
 T threonine           6.8         80           2
 V valine              6.7         79           2
 W tryptophan          1.5         18           1
 Y tyrosine            3.5         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase, class VI, type 11B 
ATP11A                0.544   ATPase, class VI, type 11A isoform b 
ATP11A                0.544   ATPase, class VI, type 11A isoform a 
ATP11C                0.507   ATPase, class VI, type 11C isoform b 
ATP11C                0.507   ATPase, class VI, type 11C isoform a 
ATP8A1                0.285   ATPase, aminophospholipid transporter (APLT), class ...
ATP8A1                0.284   ATPase, aminophospholipid transporter (APLT), class...
ATP8A2                0.280   ATPase, aminophospholipid transporter-like, Class I...
ATP8B4                0.272   ATPase class I type 8B member 4 
ATP8B2                0.270   ATPase, class I, type 8B, member 2 isoform a 
ATP8B1                0.256   ATPase, class I, type 8B, member 1 
ATP8B3                0.214   ATPase, class I, type 8B, member 3 
ATP9B                 0.186   ATPase, class II, type 9B 
ATP9A                 0.184   ATPase, class II, type 9A 
ATP10D                0.147   ATPase, class V, type 10D 
ATP10B                0.144   ATPase, class V, type 10B 
ATP10A                0.142   ATPase, class V, type 10A 
ATP8B2                0.075   ATPase, class I, type 8B, member 2 isoform b 
ATP2B2                0.030   plasma membrane calcium ATPase 2 isoform 2 
ATP2B4                0.029   plasma membrane calcium ATPase 4 isoform 4a 
ATP2B4                0.029   plasma membrane calcium ATPase 4 isoform 4b 
ATP2B3                0.028   plasma membrane calcium ATPase 3 isoform 3b 
ATP2B3                0.028   plasma membrane calcium ATPase 3 isoform 3a 
ATP2B2                0.027   plasma membrane calcium ATPase 2 isoform 1 
ATP13A4               0.025   ATPase type 13A4 
ATP2B1                0.024   plasma membrane calcium ATPase 1 isoform 1a 
ATP2B1                0.024   plasma membrane calcium ATPase 1 isoform 1b 
ATP2A1                0.022   ATPase, Ca++ transporting, fast twitch 1 isoform b [...
ATP2A1                0.022   ATPase, Ca++ transporting, fast twitch 1 isoform a [...
ATP12A                0.019   hydrogen/potassium-exchanging ATPase 12A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press