Guide to the Human Genome
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Name: ARFGEF1 Sequence: fasta or formatted (1849aa) NCBI GI: 51479145
Description:

brefeldin A-inhibited guanine nucleotide-exchange protein 1

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7        123           3
 C cysteine            2.1         39           1
 D aspartate           5.5        101           2
 E glutamate           7.5        138           2
 F phenylalanine       4.6         85           2
 G glycine             4.5         84           2
 H histidine           2.4         44           3
 I isoleucine          6.5        121           2
 K lysine              6.3        116           2
 L leucine             9.9        183           4
 M methionine          2.4         45           1
 N asparagine          4.5         83           2
 P proline             3.8         71           4
 Q glutamine           5.9        110           2
 R arginine            4.3         79           2
 S serine              7.8        145           3
 T threonine           6.1        112           3
 V valine              5.8        108           3
 W tryptophan          1.1         20           2
 Y tyrosine            2.3         42           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   brefeldin A-inhibited guanine nucleotide-exchange pr... 
ARFGEF2               0.719   ADP-ribosylation factor guanine nucleotide-exchange...
GBF1                  0.057   golgi-specific brefeldin A resistant guanine nucleoti...
CYTH1                 0.047   cytohesin 1 isoform 2 
CYTH1                 0.047   cytohesin 1 isoform 1 
CYTH3                 0.046   cytohesin 3 
CYTH2                 0.044   cytohesin 2 isoform 2 
CYTH2                 0.044   cytohesin 2 isoform 1 
CYTH4                 0.042   cytohesin 4 
IQSEC1                0.037   IQ motif and Sec7 domain 1 isoform a 
IQSEC1                0.037   IQ motif and Sec7 domain 1 isoform b 
IQSEC2                0.036   IQ motif and Sec7 domain 2 isoform 2 
IQSEC2                0.036   IQ motif and Sec7 domain 2 isoform1 
IQSEC3                0.034   IQ motif and Sec7 domain 3 
PSD3                  0.020   ADP-ribosylation factor guanine nucleotide factor 6 ...
PSD3                  0.020   ADP-ribosylation factor guanine nucleotide factor 6...
KIAA1244              0.020   brefeldin A-inhibited guanine nucleotide-exchange p...
PSD4                  0.019   pleckstrin and Sec7 domain containing 4 
FBXO8                 0.019   F-box only protein 8 
PSD2                  0.018   pleckstrin and Sec7 domain containing 2 
PSD                   0.018   pleckstrin and Sec7 domain containing 
MON2                  0.017   MON2 homolog 
ZBTB7C                0.004   zinc finger and BTB domain containing 7C 
DSPP                  0.003   dentin sialophosphoprotein preproprotein 
C10orf140             0.003   hypothetical protein LOC387640 
C11orf30              0.003   EMSY protein 
SLC4A3                0.003   solute carrier family 4, anion exchanger, member 3 ...
TTC28                 0.002   tetratricopeptide repeat domain 28 
ME1                   0.002   cytosolic malic enzyme 1 
CCDC18                0.002   sarcoma antigen NY-SAR-41 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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