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Search of human proteins with 51093708
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51093708 hypothetical protein LOC753 isoform gamma 1 [Homo
sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51093708 hypothetical protein LOC753 isoform gamma 1 [Homo sa... 551 e-157
gi|4757884 hypothetical protein LOC753 isoform beta 1 [Homo sapi... 507 e-144
gi|41281943 hypothetical protein LOC753 isoform alpha 1 [Homo sa... 506 e-143
gi|51093710 hypothetical protein LOC753 isoform gamma 2 [Homo sa... 502 e-142
gi|41281948 hypothetical protein LOC753 isoform beta 2 [Homo sap... 457 e-129
gi|41281957 hypothetical protein LOC753 isoform alpha 2 [Homo sa... 456 e-129
gi|40317616 transmembrane prostate androgen-induced protein isof... 327 7e-90
gi|21361841 transmembrane prostate androgen-induced protein isof... 325 2e-89
gi|40317620 transmembrane prostate androgen-induced protein isof... 305 3e-83
gi|40317618 transmembrane prostate androgen-induced protein isof... 305 3e-83
gi|55750053 atrophin-1 [Homo sapiens] 38 0.008
gi|55750041 atrophin-1 [Homo sapiens] 38 0.008
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 36 0.031
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 35 0.053
gi|23110964 cathepsin W preproprotein [Homo sapiens] 35 0.090
gi|190341097 rhomboid family 1 [Homo sapiens] 33 0.26
gi|29789403 PDZ domain containing 8 [Homo sapiens] 32 0.76
gi|150456424 RW1 protein [Homo sapiens] 31 0.99
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 31 1.3
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 30 2.2
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 30 2.9
gi|74271888 lipin 3 [Homo sapiens] 30 2.9
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 30 2.9
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 29 3.8
gi|62244004 modulator of estrogen induced transcription isoform ... 29 3.8
gi|63176611 modulator of estrogen induced transcription isoform ... 29 3.8
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho... 29 3.8
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho... 29 3.8
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 29 3.8
gi|239741939 PREDICTED: hypothetical protein XP_002342358 [Homo ... 29 4.9
>gi|51093708 hypothetical protein LOC753 isoform gamma 1 [Homo
sapiens]
Length = 269
Score = 551 bits (1421), Expect = e-157
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MSSDHLNNSTLKEAQFKDLFLKKAELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFI 60
MSSDHLNNSTLKEAQFKDLFLKKAELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFI
Sbjct: 1 MSSDHLNNSTLKEAQFKDLFLKKAELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFI 60
Query: 61 NRPNQSRRREDGLPQEGCLWPSDSAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQP 120
NRPNQSRRREDGLPQEGCLWPSDSAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQP
Sbjct: 61 NRPNQSRRREDGLPQEGCLWPSDSAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQP 120
Query: 121 TYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSD 180
TYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSD
Sbjct: 121 TYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSD 180
Query: 181 LIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHR 240
LIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHR
Sbjct: 181 LIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHR 240
Query: 241 GSRLQFQQNNAESTIVPIKGKDRKPGNLV 269
GSRLQFQQNNAESTIVPIKGKDRKPGNLV
Sbjct: 241 GSRLQFQQNNAESTIVPIKGKDRKPGNLV 269
>gi|4757884 hypothetical protein LOC753 isoform beta 1 [Homo
sapiens]
Length = 248
Score = 507 bits (1305), Expect = e-144
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 24 AELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSD 83
AELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSD
Sbjct: 3 AELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSD 62
Query: 84 SAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP 143
SAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP
Sbjct: 63 SAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP 122
Query: 144 PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS 203
PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS
Sbjct: 123 PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS 182
Query: 204 TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR 263
TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR
Sbjct: 183 TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR 242
Query: 264 KPGNLV 269
KPGNLV
Sbjct: 243 KPGNLV 248
>gi|41281943 hypothetical protein LOC753 isoform alpha 1 [Homo
sapiens]
Length = 306
Score = 506 bits (1302), Expect = e-143
Identities = 245/246 (99%), Positives = 246/246 (100%)
Query: 24 AELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSD 83
+ELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSD
Sbjct: 61 SELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSD 120
Query: 84 SAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP 143
SAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP
Sbjct: 121 SAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP 180
Query: 144 PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS 203
PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS
Sbjct: 181 PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS 240
Query: 204 TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR 263
TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR
Sbjct: 241 TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR 300
Query: 264 KPGNLV 269
KPGNLV
Sbjct: 301 KPGNLV 306
>gi|51093710 hypothetical protein LOC753 isoform gamma 2 [Homo
sapiens]
Length = 251
Score = 502 bits (1293), Expect = e-142
Identities = 251/269 (93%), Positives = 251/269 (93%), Gaps = 18/269 (6%)
Query: 1 MSSDHLNNSTLKEAQFKDLFLKKAELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFI 60
MSSDHLNNSTLKEAQFKDLFLKKAELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFI
Sbjct: 1 MSSDHLNNSTLKEAQFKDLFLKKAELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFI 60
Query: 61 NRPNQSRRREDGLPQEGCLWPSDSAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQP 120
NRPNQSRRREDGLPQ IMHAPRSRDRFTAPSFIQRDRFSRFQP
Sbjct: 61 NRPNQSRRREDGLPQ------------------IMHAPRSRDRFTAPSFIQRDRFSRFQP 102
Query: 121 TYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSD 180
TYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSD
Sbjct: 103 TYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSD 162
Query: 181 LIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHR 240
LIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHR
Sbjct: 163 LIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHR 222
Query: 241 GSRLQFQQNNAESTIVPIKGKDRKPGNLV 269
GSRLQFQQNNAESTIVPIKGKDRKPGNLV
Sbjct: 223 GSRLQFQQNNAESTIVPIKGKDRKPGNLV 251
>gi|41281948 hypothetical protein LOC753 isoform beta 2 [Homo
sapiens]
Length = 230
Score = 457 bits (1177), Expect = e-129
Identities = 228/246 (92%), Positives = 228/246 (92%), Gaps = 18/246 (7%)
Query: 24 AELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSD 83
AELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQ
Sbjct: 3 AELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQ-------- 54
Query: 84 SAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP 143
IMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP
Sbjct: 55 ----------IMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP 104
Query: 144 PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS 203
PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS
Sbjct: 105 PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS 164
Query: 204 TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR 263
TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR
Sbjct: 165 TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR 224
Query: 264 KPGNLV 269
KPGNLV
Sbjct: 225 KPGNLV 230
>gi|41281957 hypothetical protein LOC753 isoform alpha 2 [Homo
sapiens]
Length = 288
Score = 456 bits (1174), Expect = e-129
Identities = 227/246 (92%), Positives = 228/246 (92%), Gaps = 18/246 (7%)
Query: 24 AELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSD 83
+ELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQ
Sbjct: 61 SELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQ-------- 112
Query: 84 SAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP 143
IMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP
Sbjct: 113 ----------IMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEP 162
Query: 144 PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS 203
PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS
Sbjct: 163 PPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISAS 222
Query: 204 TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR 263
TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR
Sbjct: 223 TCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDR 282
Query: 264 KPGNLV 269
KPGNLV
Sbjct: 283 KPGNLV 288
>gi|40317616 transmembrane prostate androgen-induced protein isoform
b [Homo sapiens]
Length = 252
Score = 327 bits (838), Expect = 7e-90
Identities = 169/250 (67%), Positives = 190/250 (76%), Gaps = 7/250 (2%)
Query: 24 AELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSD 83
AELEF QIIIIVVV+ VMVVVI CLL+HYK+S RSFI+R +Q RRRED L EGCLWPS+
Sbjct: 2 AELEFVQIIIIVVVMMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSE 61
Query: 84 SAAPRLGASE--IMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGE 141
S G E + PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGE
Sbjct: 62 STVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGE 121
Query: 142 EPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGIS 201
EPPPYQGPCTLQLRDPEQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGIS
Sbjct: 122 EPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGIS 180
Query: 202 ASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVP 257
A+ S GRMEGPPPTYSEV+GH+PG+SF H Q S + G+RL ES +
Sbjct: 181 ATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIW 240
Query: 258 IKGKDRKPGN 267
K KD++ G+
Sbjct: 241 SKEKDKQKGH 250
>gi|21361841 transmembrane prostate androgen-induced protein isoform
a [Homo sapiens]
Length = 287
Score = 325 bits (834), Expect = 2e-89
Identities = 168/249 (67%), Positives = 189/249 (75%), Gaps = 7/249 (2%)
Query: 25 ELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDS 84
ELEF QIIIIVVV+ VMVVVI CLL+HYK+S RSFI+R +Q RRRED L EGCLWPS+S
Sbjct: 38 ELEFVQIIIIVVVMMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSES 97
Query: 85 AAPRLGASE--IMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEE 142
G E + PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGEE
Sbjct: 98 TVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEE 157
Query: 143 PPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISA 202
PPPYQGPCTLQLRDPEQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGISA
Sbjct: 158 PPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISA 216
Query: 203 STCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVPI 258
+ S GRMEGPPPTYSEV+GH+PG+SF H Q S + G+RL ES +
Sbjct: 217 TCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWS 276
Query: 259 KGKDRKPGN 267
K KD++ G+
Sbjct: 277 KEKDKQKGH 285
>gi|40317620 transmembrane prostate androgen-induced protein isoform
c [Homo sapiens]
Length = 237
Score = 305 bits (781), Expect = 3e-83
Identities = 156/234 (66%), Positives = 176/234 (75%), Gaps = 7/234 (2%)
Query: 40 VMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHA 97
VMVVVI CLL+HYK+S RSFI+R +Q RRRED L EGCLWPS+S G E +
Sbjct: 3 VMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAP 62
Query: 98 PRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 157
PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP
Sbjct: 63 PRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 122
Query: 158 EQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPT 217
EQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGISA+ S GRMEGPPPT
Sbjct: 123 EQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPT 181
Query: 218 YSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVPIKGKDRKPGN 267
YSEV+GH+PG+SF H Q S + G+RL ES + K KD++ G+
Sbjct: 182 YSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGH 235
>gi|40317618 transmembrane prostate androgen-induced protein isoform
c [Homo sapiens]
Length = 237
Score = 305 bits (781), Expect = 3e-83
Identities = 156/234 (66%), Positives = 176/234 (75%), Gaps = 7/234 (2%)
Query: 40 VMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHA 97
VMVVVI CLL+HYK+S RSFI+R +Q RRRED L EGCLWPS+S G E +
Sbjct: 3 VMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAP 62
Query: 98 PRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 157
PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP
Sbjct: 63 PRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 122
Query: 158 EQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPT 217
EQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGISA+ S GRMEGPPPT
Sbjct: 123 EQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPT 181
Query: 218 YSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVPIKGKDRKPGN 267
YSEV+GH+PG+SF H Q S + G+RL ES + K KD++ G+
Sbjct: 182 YSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGH 235
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.1 bits (87), Expect = 0.008
Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 43/185 (23%)
Query: 74 PQEGCLWPSDSAAPR------LGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQH 127
P L P+ S+AP +S A S ++ S S+ P+YP+
Sbjct: 354 PSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPH--- 410
Query: 128 EIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMY 187
PP SLS +PP Y P P Q A++
Sbjct: 411 --SFPPPTSLSVSNQPPKYTQPSL-----PSQ-------------------------AVW 438
Query: 188 SGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQ 247
S GP PP + A++ + G PP T ++ H P ++ HH + + + Q Q
Sbjct: 439 SQGPPPPPPYGRLLANSNAHPGPF--PPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQ 496
Query: 248 QNNAE 252
Q +
Sbjct: 497 QQQQQ 501
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.1 bits (87), Expect = 0.008
Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 43/185 (23%)
Query: 74 PQEGCLWPSDSAAPR------LGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQH 127
P L P+ S+AP +S A S ++ S S+ P+YP+
Sbjct: 354 PSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPH--- 410
Query: 128 EIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMY 187
PP SLS +PP Y P P Q A++
Sbjct: 411 --SFPPPTSLSVSNQPPKYTQPSL-----PSQ-------------------------AVW 438
Query: 188 SGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQ 247
S GP PP + A++ + G PP T ++ H P ++ HH + + + Q Q
Sbjct: 439 SQGPPPPPPYGRLLANSNAHPGPF--PPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQ 496
Query: 248 QNNAE 252
Q +
Sbjct: 497 QQQQQ 501
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 36.2 bits (82), Expect = 0.031
Identities = 39/151 (25%), Positives = 54/151 (35%), Gaps = 18/151 (11%)
Query: 75 QEGCLWPSDSAAP-RLGASEIMHAPRSRDRFTAPSFIQRD-------RFSRFQPTYPYVQ 126
Q G + S S +P R A + + PR+R++FT PS + RD R R + Q
Sbjct: 179 QHGLYYASRSRSPNRFDAHDPRYEPRAREQFTLPSVVHRDIYRDDITREVRGRRPERNYQ 238
Query: 127 HEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAM 186
H P S S + P + R P +R S SD I +
Sbjct: 239 HSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSS----------SSDSISSSS 288
Query: 187 YSGGPCPPSSNSGISASTCSSNGRMEGPPPT 217
+ SS+S S S P PT
Sbjct: 289 STSSDSSDSSSSSSDDSPARSVQSAAVPAPT 319
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 35.4 bits (80), Expect = 0.053
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 111 QRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRA 170
+RDR R P + ++D P+ ++ G PP +GP + R+ E++ E R R
Sbjct: 2059 RRDRKQRSLEKGPSLSADMDGAPSSAVGPGL--PPGEGPTGCR-RERERRQERGRSQERR 2115
Query: 171 PPNRTIFDSDLIDIAMYSGGPCPPSSNSGISA-STCSSNGRMEGPPPTYSEVMGHHPGAS 229
P+ + + GG PP +S+ T + G+ GP P S + P S
Sbjct: 2116 QPSSSSSEKQRFYSCDRFGGREPPKPKPSLSSHPTSPTAGQEPGPHPQGSGSVNGSPLLS 2175
Query: 230 FLHHQRSNAHRGSRLQFQQ 248
S RG R Q Q
Sbjct: 2176 --TSGASTPGRGGRRQLPQ 2192
>gi|23110964 cathepsin W preproprotein [Homo sapiens]
Length = 376
Score = 34.7 bits (78), Expect = 0.090
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 148 GPCTLQLRDPEQQMELNRESV-RAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCS 206
GP T+ + + ++L R+ V +A P T D L+D ++ G S GI A T S
Sbjct: 258 GPITVTIN--MKPLQLYRKGVIKATP--TTCDPQLVDHSVLLVGFGSVKSEEGIWAETVS 313
Query: 207 SNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDRKP 265
S + + P PT ++ + GA + HRGS N T P+ + +KP
Sbjct: 314 SQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGS------NTCGITKFPLTARVQKP 366
>gi|190341097 rhomboid family 1 [Homo sapiens]
Length = 855
Score = 33.1 bits (74), Expect = 0.26
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 117 RFQPTYPYVQHEIDLPP--TISLSDGEEPPP-YQGPCTLQLR 155
R+ P V E+DLP +SL+ E PPP Y GPC L ++
Sbjct: 112 RYGKLKPQVLRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQ 153
>gi|29789403 PDZ domain containing 8 [Homo sapiens]
Length = 1154
Score = 31.6 bits (70), Expect = 0.76
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 131 LPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPP 172
LPP I DG +PPP + T ++ DP Q + + S PP
Sbjct: 552 LPPKIQSKDGNKPPPLK---TSEITDPAQVSKPTQGSAFKPP 590
>gi|150456424 RW1 protein [Homo sapiens]
Length = 1883
Score = 31.2 bits (69), Expect = 0.99
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 197 NSGISASTCSSNGRMEGPPPTYSEVMGHHPGAS 229
NS +T SS G + PPP + V H PG+S
Sbjct: 1543 NSQELGNTSSSEGEKDSPPPEWDSVPVHKPGSS 1575
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 30.8 bits (68), Expect = 1.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 188 SGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVM 222
S P P ++N +A + SS + +GPPPT S+++
Sbjct: 973 SPSPVPATNNQVPTAMSSSSTPQSQGPPPTVSQML 1007
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 30.0 bits (66), Expect = 2.2
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 28/101 (27%)
Query: 120 PTYP---YVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTI 176
PT P +Q+++ +PP S P P Q P Q + PE + PP +
Sbjct: 829 PTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPL---------PPAPHL 879
Query: 177 FDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPT 217
PPSS S AS+ ++ R+ P P+
Sbjct: 880 ----------------PPSSTSSAVASSSETSSRLPAPTPS 904
Score = 30.0 bits (66), Expect = 2.2
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 63 PNQSRRREDGLPQEGCLWPSDSAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTY 122
P Q R P EG L P+ P +S + + + R AP+ S FQ +
Sbjct: 857 PPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPT------PSDFQLQF 910
Query: 123 PYVQ--HEIDL-PPTISLSDGEEPPPYQGPCTLQL 154
P Q H+ PPT+ L PP P T Q+
Sbjct: 911 PPSQGPHKSPTPPPTLHLVPEPAAPPPPPPRTFQM 945
>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
sapiens]
Length = 2923
Score = 29.6 bits (65), Expect = 2.9
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 125 VQHEIDLPP----TISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRA 170
VQ + D P +SLS G+ P P GP L D ++++ LNR + A
Sbjct: 1169 VQRDTDAPGGHILNVSLSVGQPPGPGGGPPFLPSEDLQERLYLNRSLLTA 1218
>gi|74271888 lipin 3 [Homo sapiens]
Length = 851
Score = 29.6 bits (65), Expect = 2.9
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 62 RPNQSRRREDGLPQEGCLWPSDSAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPT 121
R + RRR+ ++ S GA + P P +Q + S QP
Sbjct: 141 RRKRRRRRKPKQKEDAVATDSSPEELEAGAESELSLPEKLR--PEPPGVQLEEKSSLQPK 198
Query: 122 YPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPE 158
Y + + PP SLS GE P + L++R PE
Sbjct: 199 DIYPYSDGEWPPQASLSAGELTSP-KSDSELEVRTPE 234
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 29.6 bits (65), Expect = 2.9
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 132 PPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGP 191
P S+S E PP GPC S+ PP + I++ + +GG
Sbjct: 2791 PSVRSMSGPESSPPIGGPCE----------AAPSSSLPTPPQQPFIARRHIELGV-TGGG 2839
Query: 192 CPPSSNSGISASTCSSNGRMEGPPP 216
P + + + A T + R G PP
Sbjct: 2840 SPENGDGALLAITPPAVKRRRGRPP 2864
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 29.3 bits (64), Expect = 3.8
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 20/140 (14%)
Query: 75 QEGCLWPSDSAAPRLGASEIMH------APRSRDRFTAP-------SFIQRDRFSRFQPT 121
Q + P+ +PR G+ ++ AP+ + TAP + + R+ + T
Sbjct: 787 QRSPVGPAGVRSPRPGSPQMQASPSPGIAPKPKTPPTAPEPAAAVQAPLPREPLALAGRT 846
Query: 122 YPYVQHEIDLPPTI----SLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIF 177
P PPT S S G P P L DPE E+ R P R +F
Sbjct: 847 APAQPRAASAPPTDRSPQSPSQGARRQPGAAPLGKVLVDPESGRYYFVEAPRQPRLRVLF 906
Query: 178 DSD---LIDIAMYSGGPCPP 194
D + +++ + P PP
Sbjct: 907 DPESGQYVEVLLPPSSPGPP 926
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 29.3 bits (64), Expect = 3.8
Identities = 48/165 (29%), Positives = 65/165 (39%), Gaps = 28/165 (16%)
Query: 99 RSRDRFTAPSFIQ------RDRF---SRFQPTYPYVQHEID----LPPTISLSDGEEPPP 145
R R RF S +Q RDRF S + P + E P S S EPPP
Sbjct: 756 RERGRFPESSAVQSSSFERRDRFVGQSEGKKARPTARREDPSFERYPKNFSDSRRNEPPP 815
Query: 146 YQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAM----YSGGPCP--PSS-NS 198
+ +LR+ +++ R RT+ D DI GP P P+S S
Sbjct: 816 PRN----ELRESDRREVRGERDER----RTVIIHDRPDITHPRHPREAGPNPSRPTSWKS 867
Query: 199 GISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSR 243
S ST R+E P + EV GH + ++ S + GSR
Sbjct: 868 EGSMSTDKRETRVERPERSGREVSGHSVRGAPPGNRSSASGYGSR 912
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 29.3 bits (64), Expect = 3.8
Identities = 48/165 (29%), Positives = 65/165 (39%), Gaps = 28/165 (16%)
Query: 99 RSRDRFTAPSFIQ------RDRF---SRFQPTYPYVQHEID----LPPTISLSDGEEPPP 145
R R RF S +Q RDRF S + P + E P S S EPPP
Sbjct: 774 RERGRFPESSAVQSSSFERRDRFVGQSEGKKARPTARREDPSFERYPKNFSDSRRNEPPP 833
Query: 146 YQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAM----YSGGPCP--PSS-NS 198
+ +LR+ +++ R RT+ D DI GP P P+S S
Sbjct: 834 PRN----ELRESDRREVRGERDER----RTVIIHDRPDITHPRHPREAGPNPSRPTSWKS 885
Query: 199 GISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSR 243
S ST R+E P + EV GH + ++ S + GSR
Sbjct: 886 EGSMSTDKRETRVERPERSGREVSGHSVRGAPPGNRSSASGYGSR 930
>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
sapiens]
Length = 1548
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 164 NRESVRAPPNRTIFDSDLIDIAMYSGGP----CPPSSNSGISASTCSSNGRMEGPPP 216
+R+S++ P++ + L++ ++Y P PPS + +++ + +S G PPP
Sbjct: 23 SRDSLKLHPSQNFHRAGLLEESVYDLLPKELQLPPSRETSVASMSQTSGGEAGSPPP 79
>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
sapiens]
Length = 1549
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 164 NRESVRAPPNRTIFDSDLIDIAMYSGGP----CPPSSNSGISASTCSSNGRMEGPPP 216
+R+S++ P++ + L++ ++Y P PPS + +++ + +S G PPP
Sbjct: 23 SRDSLKLHPSQNFHRAGLLEESVYDLLPKELQLPPSRETSVASMSQTSGGEAGSPPP 79
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 29.3 bits (64), Expect = 3.8
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 15/124 (12%)
Query: 132 PPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAP-PNRTIFDSDLIDIAMYSGG 190
PP+ + D PY+ R P + +R R+P P R + + I + G
Sbjct: 286 PPSYARRDSPTYDPYK-------RSPSESSSESRSRSRSPTPGR---EEKITFITSFGGS 335
Query: 191 PCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNN 250
+ +A+ +++G G PP + G PG + +RS++ S + ++
Sbjct: 336 ----DEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSS 391
Query: 251 AEST 254
+ S+
Sbjct: 392 SRSS 395
>gi|239741939 PREDICTED: hypothetical protein XP_002342358 [Homo
sapiens]
Length = 389
Score = 28.9 bits (63), Expect = 4.9
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 130 DLPPTISLSDGEE----PPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIA 185
D P + L D + PPP LQL DP+ APP + + ++
Sbjct: 65 DSSPGLQLHDPQSGTSAPPP-----GLQLHDPQT-------GTSAPPRVSSCTTRKLEHQ 112
Query: 186 MYSGGPCPPSSNSGISA 202
+SG P P SN IS+
Sbjct: 113 PHSGSPAAPPSNCNISS 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,288,458
Number of Sequences: 37866
Number of extensions: 637535
Number of successful extensions: 2486
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2406
Number of HSP's gapped (non-prelim): 67
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.