Guide to the Human Genome
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Name: PMEPA1 Sequence: fasta or formatted (237aa) NCBI GI: 40317618
Description:

transmembrane prostate androgen-induced protein isoform c

Referenced in:

Prostate

Other entries for this name:
alt prot [287aa] transmembrane prostate androgen-induced protein isoform a
alt prot [252aa] transmembrane prostate androgen-induced protein isoform b
alt mRNA [237aa] transmembrane prostate androgen-induced protein isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         11           2
 C cysteine            2.1          5           1
 D aspartate           3.8          9           1
 E glutamate           6.8         16           2
 F phenylalanine       2.5          6           1
 G glycine             7.6         18           2
 H histidine           4.2         10           2
 I isoleucine          4.2         10           1
 K lysine              2.1          5           1
 L leucine             8.4         20           2
 M methionine          2.1          5           2
 N asparagine          1.7          4           1
 P proline            12.7         30           3
 Q glutamine           5.5         13           2
 R arginine            7.2         17           3
 S serine             11.8         28           2
 T threonine           4.6         11           1
 V valine              3.8          9           3
 W tryptophan          0.8          2           1
 Y tyrosine            3.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane prostate androgen-induced protein isof... 
PMEPA1                1.000   transmembrane prostate androgen-induced protein isof...
PMEPA1                1.000   transmembrane prostate androgen-induced protein isof...
PMEPA1                1.000   transmembrane prostate androgen-induced protein isof...
C18orf1               0.592   hypothetical protein LOC753 isoform alpha 1 
C18orf1               0.592   hypothetical protein LOC753 isoform beta 1 
C18orf1               0.592   hypothetical protein LOC753 isoform gamma 1 
C18orf1               0.543   hypothetical protein LOC753 isoform alpha 2 
C18orf1               0.543   hypothetical protein LOC753 isoform beta 2 
C18orf1               0.543   hypothetical protein LOC753 isoform gamma 2 
CRTC1                 0.032   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.032   mucoepidermoid carcinoma translocated 1 isoform 1 [...
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
CPSF7                 0.030   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF7                 0.023   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF7                 0.023   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
GLTSCR1               0.023   glioma tumor suppressor candidate region gene 1 [Ho...
ATN1                  0.021   atrophin-1 
ATN1                  0.021   atrophin-1 
NFATC4                0.021   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.021   nuclear factor of activated T-cells, cytoplasmic, ca...
PDCD6IP               0.019   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.019   programmed cell death 6 interacting protein isoform ...
CACNA1B               0.019   calcium channel, voltage-dependent, N type, alpha 1B ...
TULP4                 0.019   tubby like protein 4 isoform 1 
SMTNL2                0.017   smoothelin-like 2 isoform 2 
SMTNL2                0.017   smoothelin-like 2 isoform 1 
C10orf71              0.015   hypothetical protein LOC118461 isoform 1 
CDCA3                 0.015   cell division cycle associated 3 
RHBDF1                0.015   rhomboid family 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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