Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NFAT5 Sequence: fasta or formatted (1548aa) NCBI GI: 164419746
Description:

nuclear factor of activated T-cells 5 isoform d

Referenced in:

T cells

Other entries for this name:
alt prot [1549aa] nuclear factor of activated T-cells 5 isoform b
alt prot [1455aa] nuclear factor of activated T-cells 5 isoform a
alt prot [1455aa] nuclear factor of activated T-cells 5 isoform a
alt prot [1531aa] nuclear factor of activated T-cells 5 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         85           3
 C cysteine            1.1         17           1
 D aspartate           3.0         46           1
 E glutamate           5.0         78           3
 F phenylalanine       3.2         50           2
 G glycine             5.4         84           2
 H histidine           1.9         29           1
 I isoleucine          3.7         58           2
 K lysine              3.3         51           3
 L leucine             6.9        107           2
 M methionine          3.6         55           2
 N asparagine          6.1         95           2
 P proline             7.4        115           3
 Q glutamine          13.9        215          17
 R arginine            2.1         32           2
 S serine             14.1        218           4
 T threonine           7.2        111           4
 V valine              5.5         85           2
 W tryptophan          0.1          2           1
 Y tyrosine            1.0         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear factor of activated T-cells 5 isoform d [Ho... 
NFAT5                 0.998   nuclear factor of activated T-cells 5 isoform b [Ho...
NFAT5                 0.983   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.939   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.939   nuclear factor of activated T-cells 5 isoform a [Hom...
NFATC3                0.066   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.066   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.066   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.066   nuclear factor of activated T-cells, cytoplasmic, cal...
NFATC2                0.065   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC2                0.065   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC2                0.065   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC1                0.064   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.064   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.064   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.064   nuclear factor of activated T-cells, cytosolic compo...
NFATC4                0.057   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.057   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC1                0.048   nuclear factor of activated T-cells, cytosolic compo...
MLL2                  0.023   myeloid/lymphoid or mixed-lineage leukemia 2 
MED15                 0.020   mediator complex subunit 15 isoform b 
MAML2                 0.020   mastermind-like 2 
PAXIP1                0.019   PAX interacting protein 1 
NCOA6                 0.019   nuclear receptor coactivator 6 
MED15                 0.018   mediator complex subunit 15 isoform a 
ZNF853                0.018   zinc finger protein 853 
NCOA3                 0.017   nuclear receptor coactivator 3 isoform b 
PHC1                  0.017   polyhomeotic 1-like 
ARID1A                0.017   AT rich interactive domain 1A isoform a 
ARID1A                0.017   AT rich interactive domain 1A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press