Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C18orf1 Sequence: fasta or formatted (230aa) NCBI GI: 41281948
Description:

hypothetical protein LOC753 isoform beta 2

Referenced in:

Prostate

Other entries for this name:
alt prot [306aa] hypothetical protein LOC753 isoform alpha 1
alt prot [288aa] hypothetical protein LOC753 isoform alpha 2
alt prot [248aa] hypothetical protein LOC753 isoform beta 1
alt prot [269aa] hypothetical protein LOC753 isoform gamma 1
alt prot [251aa] hypothetical protein LOC753 isoform gamma 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         11           2
 C cysteine            1.7          4           1
 D aspartate           4.3         10           1
 E glutamate           5.2         12           2
 F phenylalanine       3.9          9           1
 G glycine             5.7         13           2
 H histidine           3.5          8           2
 I isoleucine          7.0         16           4
 K lysine              1.7          4           1
 L leucine             5.7         13           2
 M methionine          3.0          7           1
 N asparagine          4.8         11           2
 P proline            10.4         24           3
 Q glutamine           6.1         14           2
 R arginine            8.7         20           3
 S serine             10.0         23           2
 T threonine           4.3         10           1
 V valine              6.5         15           4
 W tryptophan          0.0          0           0
 Y tyrosine            2.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC753 isoform beta 2 
C18orf1               0.993   hypothetical protein LOC753 isoform gamma 2 
C18orf1               0.991   hypothetical protein LOC753 isoform alpha 2 
C18orf1               0.975   hypothetical protein LOC753 isoform beta 1 
C18orf1               0.966   hypothetical protein LOC753 isoform gamma 1 
C18orf1               0.964   hypothetical protein LOC753 isoform alpha 1 
PMEPA1                0.624   transmembrane prostate androgen-induced protein isof...
PMEPA1                0.620   transmembrane prostate androgen-induced protein isof...
PMEPA1                0.575   transmembrane prostate androgen-induced protein isof...
PMEPA1                0.575   transmembrane prostate androgen-induced protein isof...
ATN1                  0.027   atrophin-1 
ATN1                  0.027   atrophin-1 
CACNA1B               0.022   calcium channel, voltage-dependent, N type, alpha 1B ...
CTSW                  0.022   cathepsin W preproprotein 
RHBDF1                0.018   rhomboid family 1 
PDZD8                 0.016   PDZ domain containing 8 
TMEM131               0.013   RW1 protein 
ARID2                 0.013   AT rich interactive domain 2 (ARID, RFX-like) 
SPEN                  0.011   spen homolog, transcriptional regulator 
GLTSCR1               0.011   glioma tumor suppressor candidate region gene 1 [Ho...
CELSR2                0.011   cadherin EGF LAG seven-pass G-type receptor 2 
SRCAP                 0.011   Snf2-related CBP activator protein 
SLTM                  0.009   modulator of estrogen induced transcription isoform ...
SLTM                  0.009   modulator of estrogen induced transcription isoform ...
NFAT5                 0.009   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.009   nuclear factor of activated T-cells 5 isoform b [Ho...
SFRS16                0.009   splicing factor, arginine/serine-rich 16 
LOC100289268          0.009   PREDICTED: hypothetical protein XP_002342358 
CDSN                  0.009   corneodesmosin precursor 
SULF1                 0.009   sulfatase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press