Search of human proteins with 50659086

Search of human proteins with 50659086

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo
sapiens]
         (415 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens]     836   0.0  
gi|169808399 prenyl diphosphate synthase, subunit 2 [Homo sapiens]     91   3e-18
gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Hom...    49   1e-05
gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo...    49   1e-05
gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Hom...    45   9e-05
gi|209571584 farnesyl diphosphate synthase isoform b [Homo sapiens]    34   0.21 
gi|209571582 farnesyl diphosphate synthase isoform a [Homo sapiens]    34   0.21 
gi|4503685 farnesyl diphosphate synthase isoform a [Homo sapiens]      34   0.21 
gi|24308233 synaptotagmin XIII [Homo sapiens]                          33   0.48 
gi|154355000 KH-type splicing regulatory protein [Homo sapiens]        31   1.8  
gi|4503489 ephrin-B3 precursor [Homo sapiens]                          31   2.4  
gi|239743781 PREDICTED: hypothetical protein XP_002344297 [Homo ...    30   3.1  
gi|40385873 G protein-coupled receptor 150 [Homo sapiens]              30   3.1  
gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]         30   4.0  
gi|194272172 double homeobox, 4 [Homo sapiens]                         30   4.0  
gi|194272217 double homeobox, 4-like [Homo sapiens]                    30   4.0  
gi|194272216 double homeobox, 4-like [Homo sapiens]                    30   4.0  
gi|194272215 double homeobox, 4-like [Homo sapiens]                    30   4.0  
gi|194272192 double homeobox, 4-like [Homo sapiens]                    30   4.0  
gi|153792074 proline rich 12 [Homo sapiens]                            30   4.0  
gi|239755629 PREDICTED: hypothetical protein [Homo sapiens]            30   5.3  
gi|239744431 PREDICTED: hypothetical protein XP_002343158 [Homo ...    30   5.3  
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          30   5.3  
gi|8051586 ficolin 2 isoform b precursor [Homo sapiens]                30   5.3  
gi|61744445 ficolin 2 isoform a precursor [Homo sapiens]               30   5.3  
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]           30   5.3  
gi|27886568 interferon induced with helicase C domain 1 [Homo sa...    29   6.9  
gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo ...    29   6.9  
gi|239753506 PREDICTED: hypothetical protein [Homo sapiens]            29   6.9  
gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]            29   6.9  

>gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens]
          Length = 415

 Score =  836 bits (2160), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)

Query: 1   MASRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVRAQVHRRKGLDLSQIPYINL 60
           MASRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVRAQVHRRKGLDLSQIPYINL
Sbjct: 1   MASRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVRAQVHRRKGLDLSQIPYINL 60

Query: 61  VKHLTSACPNVCRISRFHHTTPDSKTHSGEKYTDPFKLGWRDLKGLYEDIRKELLISTSE 120
           VKHLTSACPNVCRISRFHHTTPDSKTHSGEKYTDPFKLGWRDLKGLYEDIRKELLISTSE
Sbjct: 61  VKHLTSACPNVCRISRFHHTTPDSKTHSGEKYTDPFKLGWRDLKGLYEDIRKELLISTSE 120

Query: 121 LKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHD 180
           LKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHD
Sbjct: 121 LKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHD 180

Query: 181 DVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVR 240
           DVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVR
Sbjct: 181 DVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVR 240

Query: 241 GEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVG 300
           GEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVG
Sbjct: 241 GEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVG 300

Query: 301 IAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDV 360
           IAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDV
Sbjct: 301 IAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDV 360

Query: 361 DRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERDALIQLSEIVLTRDK 415
           DRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERDALIQLSEIVLTRDK
Sbjct: 361 DRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERDALIQLSEIVLTRDK 415


>gi|169808399 prenyl diphosphate synthase, subunit 2 [Homo sapiens]
          Length = 399

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 16/255 (6%)

Query: 158 VQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHTVNKI-WGEKKAVLAGDLILSAAS 216
           + + QR++A I E+IH A LVH  +++    +     +  + +G K A+L+GD +L+ A 
Sbjct: 141 IYSCQRSLAEITELIHIALLVHRGIVNLNELQSSDGPLKDMQFGNKIAILSGDFLLANAC 200

Query: 217 IALARIGNTTVISILTQVIEDLVRGEFLQLG-SKEN---ENERFAHYLEKTFKKTASLIA 272
             LA + NT V+ +L   + DLV+G + +   SKE+   ++   + + E+TF    +L+A
Sbjct: 201 NGLALLQNTKVVELLASALMDLVQGVYHENSTSKESYITDDIGISTWKEQTFLSHGALLA 260

Query: 273 NSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLA 332
            SC+A   L   D  V  +A+QYGK++ ++ ++  DV  F      + + TS  +   L 
Sbjct: 261 KSCQAAMELAKHDAEVQNMAFQYGKHMAMSHKINSDVQPF------IKEKTSDSMTFNLN 314

Query: 333 TGPVLFACQQFPEMNAMIMR--RFSLPGDVDRA--RQYVLQSDGVQQTTYLAQQYCHEAI 388
           + PV+   Q+F   +  I +       G +D A  R+ +    GV     L + + ++A+
Sbjct: 315 SAPVVLH-QEFLGRDLWIKQIGEAQEKGRLDYAKLRERIKAGKGVTSAIDLCRYHGNKAL 373

Query: 389 REISKLRPSPERDAL 403
             +    PS  R AL
Sbjct: 374 EALESFPPSEARSAL 388


>gi|83700220 geranylgeranyl diphosphate synthase 1 isoform A [Homo
           sapiens]
          Length = 300

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 49/242 (20%), Positives = 103/242 (42%), Gaps = 8/242 (3%)

Query: 168 IAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTV 227
           + EM+H ASL+ DD+ D++  RRG    + I+G    + + + +       +  + +   
Sbjct: 52  VTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDA 111

Query: 228 ISILTQVIEDLVRGEFLQLGSKENEN-ERFAHYLEKTFKKTASLIANSCKAVSVLGCPDP 286
           + + T+ + +L +G+ L +  ++N        Y     +KT  L   +   + +      
Sbjct: 112 VKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE 171

Query: 287 VVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEM 346
            +  +       +G+ FQ+ DD  +  S      K    DL  G  + P + A    PE 
Sbjct: 172 DLKPLL----NTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPES 227

Query: 347 NAM--IMRRFSLPGDVDRARQYVLQSDG-VQQTTYLAQQYCHEAIREISKLRPSPERDAL 403
             +  I+R+ +   D+ +   + L+  G  + T    ++   +A ++I     +PE  AL
Sbjct: 228 TQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVAL 287

Query: 404 IQ 405
           ++
Sbjct: 288 VK 289


>gi|4758430 geranylgeranyl diphosphate synthase 1 isoform A [Homo
           sapiens]
          Length = 300

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 49/242 (20%), Positives = 103/242 (42%), Gaps = 8/242 (3%)

Query: 168 IAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTV 227
           + EM+H ASL+ DD+ D++  RRG    + I+G    + + + +       +  + +   
Sbjct: 52  VTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDA 111

Query: 228 ISILTQVIEDLVRGEFLQLGSKENEN-ERFAHYLEKTFKKTASLIANSCKAVSVLGCPDP 286
           + + T+ + +L +G+ L +  ++N        Y     +KT  L   +   + +      
Sbjct: 112 VKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE 171

Query: 287 VVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEM 346
            +  +       +G+ FQ+ DD  +  S      K    DL  G  + P + A    PE 
Sbjct: 172 DLKPLL----NTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPES 227

Query: 347 NAM--IMRRFSLPGDVDRARQYVLQSDG-VQQTTYLAQQYCHEAIREISKLRPSPERDAL 403
             +  I+R+ +   D+ +   + L+  G  + T    ++   +A ++I     +PE  AL
Sbjct: 228 TQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVAL 287

Query: 404 IQ 405
           ++
Sbjct: 288 VK 289


>gi|83700223 geranylgeranyl diphosphate synthase 1 isoform B [Homo
           sapiens]
          Length = 246

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 48/239 (20%), Positives = 101/239 (42%), Gaps = 8/239 (3%)

Query: 171 MIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTVISI 230
           M+H ASL+ DD+ D++  RRG    + I+G    + + + +       +  + +   + +
Sbjct: 1   MLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKL 60

Query: 231 LTQVIEDLVRGEFLQLGSKENEN-ERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVH 289
            T+ + +L +G+ L +  ++N        Y     +KT  L   +   + +       + 
Sbjct: 61  FTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLK 120

Query: 290 EIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAM 349
            +       +G+ FQ+ DD  +  S      K    DL  G  + P + A    PE   +
Sbjct: 121 PLL----NTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQV 176

Query: 350 --IMRRFSLPGDVDRARQYVLQSDG-VQQTTYLAQQYCHEAIREISKLRPSPERDALIQ 405
             I+R+ +   D+ +   + L+  G  + T    ++   +A ++I     +PE  AL++
Sbjct: 177 QNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVK 235


>gi|209571584 farnesyl diphosphate synthase isoform b [Homo sapiens]
          Length = 353

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 55/222 (24%), Positives = 86/222 (38%), Gaps = 26/222 (11%)

Query: 119 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRA--IALIAEMIHTAS 176
           + LKE+ EY   G GK  R + V +  R   +     +   + QRA  +    E++    
Sbjct: 43  ARLKEVLEYNAIG-GKYNRGLTVVVAFR--ELVEPRKQDADSLQRAWTVGWCVELLQAFF 99

Query: 177 LVHDDVIDDASSRRGKHTVNKIWGEKKAV----LAGDLILSAASIALARI------GNTT 226
           LV DD++D + +RRG+      W +K  V    +    +L A    L ++          
Sbjct: 100 LVADDIMDSSLTRRGQ----ICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 155

Query: 227 VISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFK-----KTA--SLIANSCKAVS 279
           +I +  Q       G+ L L +    N     + EK +K     KTA  S       A+ 
Sbjct: 156 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMY 215

Query: 280 VLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGK 321
           + G      H  A +    +G  FQ+ DD LD        GK
Sbjct: 216 MAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK 257


>gi|209571582 farnesyl diphosphate synthase isoform a [Homo sapiens]
          Length = 419

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 55/222 (24%), Positives = 86/222 (38%), Gaps = 26/222 (11%)

Query: 119 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRA--IALIAEMIHTAS 176
           + LKE+ EY   G GK  R + V +  R   +     +   + QRA  +    E++    
Sbjct: 109 ARLKEVLEYNAIG-GKYNRGLTVVVAFR--ELVEPRKQDADSLQRAWTVGWCVELLQAFF 165

Query: 177 LVHDDVIDDASSRRGKHTVNKIWGEKKAV----LAGDLILSAASIALARI------GNTT 226
           LV DD++D + +RRG+      W +K  V    +    +L A    L ++          
Sbjct: 166 LVADDIMDSSLTRRGQ----ICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 221

Query: 227 VISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFK-----KTA--SLIANSCKAVS 279
           +I +  Q       G+ L L +    N     + EK +K     KTA  S       A+ 
Sbjct: 222 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMY 281

Query: 280 VLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGK 321
           + G      H  A +    +G  FQ+ DD LD        GK
Sbjct: 282 MAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK 323


>gi|4503685 farnesyl diphosphate synthase isoform a [Homo sapiens]
          Length = 419

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 55/222 (24%), Positives = 86/222 (38%), Gaps = 26/222 (11%)

Query: 119 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRA--IALIAEMIHTAS 176
           + LKE+ EY   G GK  R + V +  R   +     +   + QRA  +    E++    
Sbjct: 109 ARLKEVLEYNAIG-GKYNRGLTVVVAFR--ELVEPRKQDADSLQRAWTVGWCVELLQAFF 165

Query: 177 LVHDDVIDDASSRRGKHTVNKIWGEKKAV----LAGDLILSAASIALARI------GNTT 226
           LV DD++D + +RRG+      W +K  V    +    +L A    L ++          
Sbjct: 166 LVADDIMDSSLTRRGQ----ICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 221

Query: 227 VISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFK-----KTA--SLIANSCKAVS 279
           +I +  Q       G+ L L +    N     + EK +K     KTA  S       A+ 
Sbjct: 222 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMY 281

Query: 280 VLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGK 321
           + G      H  A +    +G  FQ+ DD LD        GK
Sbjct: 282 MAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK 323


>gi|24308233 synaptotagmin XIII [Homo sapiens]
          Length = 426

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 140 IVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHTVNKIW 199
           ++ ++ +A N+H N S+ +     ++ +  +  H A       +    ++R KH +N +W
Sbjct: 304 LLVVLIKAKNLHSNQSKELLGKDVSVKVTLK--HQARK-----LKKKQTKRAKHKINPVW 356

Query: 200 GEKKAVLAGDLILSAASIALARIG 223
            E       D +L A+S+ L  +G
Sbjct: 357 NEMIMFELPDDLLQASSVELEVLG 380


>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
          Length = 711

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)

Query: 21  PGPGSPGRAGPLGP 34
           PGPG PG AGP+GP
Sbjct: 504 PGPGGPGPAGPMGP 517


>gi|4503489 ephrin-B3 precursor [Homo sapiens]
          Length = 340

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 8   WRRGCSWKPAARSPGPGSPGRAGPLG 33
           WRR  +    +R PGPGS GR G LG
Sbjct: 251 WRRRRAKPSESRHPGPGSFGRGGSLG 276


>gi|239743781 PREDICTED: hypothetical protein XP_002344297 [Homo
           sapiens]
          Length = 228

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 12/101 (11%)

Query: 18  ARSPGPGSPGRAGPLGPSAAAEVRAQVHRRKGLDLSQIPYINLVKHLTSACPNVCRISRF 77
           +++P P  PG+  P G +  AE R +  ++KG            ++  S     C + R 
Sbjct: 8   SQTPKPEPPGKRLPTGHNTQAETRGEADQKKG---------RRARNPASGAQGTC-VPRR 57

Query: 78  HHTTPDSKTHSGEKYTDPFKLGWRDLKGLYEDIRKELLIST 118
            HT  D     G +     + G R+ +   E +++E ++ T
Sbjct: 58  THTQTDRDRKRGRRKEREGREGERERE--RERLKRETVVGT 96


>gi|40385873 G protein-coupled receptor 150 [Homo sapiens]
          Length = 434

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 1   MASRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVRAQVHRRK 48
           + S WWR R      PAA +P   SPGRA    P+ +A  RA+V   K
Sbjct: 255 LLSVWWRHRPQA---PAAAAPWSASPGRA----PAPSALPRAKVQSLK 295


>gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]
          Length = 485

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 3   SRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVR 41
           S WW W RG     AA  P  G+     P  P A+A  R
Sbjct: 368 SPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASAR 406


>gi|194272172 double homeobox, 4 [Homo sapiens]
          Length = 485

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 3   SRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVR 41
           S WW W RG     AA  P  G+     P  P A+A  R
Sbjct: 368 SPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASAR 406


>gi|194272217 double homeobox, 4-like [Homo sapiens]
          Length = 485

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 3   SRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVR 41
           S WW W RG     AA  P  G+     P  P A+A  R
Sbjct: 368 SPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASAR 406


>gi|194272216 double homeobox, 4-like [Homo sapiens]
          Length = 485

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 3   SRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVR 41
           S WW W RG     AA  P  G+     P  P A+A  R
Sbjct: 368 SPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASAR 406


>gi|194272215 double homeobox, 4-like [Homo sapiens]
          Length = 485

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 3   SRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVR 41
           S WW W RG     AA  P  G+     P  P A+A  R
Sbjct: 368 SPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASAR 406


>gi|194272192 double homeobox, 4-like [Homo sapiens]
          Length = 485

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 3   SRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVR 41
           S WW W RG     AA  P  G+     P  P A+A  R
Sbjct: 368 SPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASAR 406


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 20  SPGPGSPGRAGPLGPSAAAEVRA 42
           SPG G P +AGP G +A A  RA
Sbjct: 340 SPGAGEPSKAGPSGATAGASGRA 362


>gi|239755629 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 92

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 2  ASRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVRAQ 43
          AS+W   +     KP  R PG G  G AGP      AE   Q
Sbjct: 42 ASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLGAETLEQ 83


>gi|239744431 PREDICTED: hypothetical protein XP_002343158 [Homo
          sapiens]
          Length = 92

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 2  ASRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVRAQ 43
          AS+W   +     KP  R PG G  G AGP      AE   Q
Sbjct: 42 ASQWGSAQAAARLKPRGRGPGWGLRGGAGPASSYLGAETLEQ 83


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 9    RRGCSWKPAAR-SPG-PGSPGRAGPLGP 34
            R G S K   R SPG PGSPG  GP+GP
Sbjct: 2261 RDGASGKDGDRGSPGVPGSPGLPGPVGP 2288


>gi|8051586 ficolin 2 isoform b precursor [Homo sapiens]
          Length = 275

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 16 PAARSPGPGSPGRAGPLGPSAA 37
          P  R P PG PG+AGP GP+ A
Sbjct: 33 PGERGP-PGPPGKAGPPGPNGA 53


>gi|61744445 ficolin 2 isoform a precursor [Homo sapiens]
          Length = 313

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 11 GCSWKPAARSPGPGSPGRAGPLGPSAA 37
          G + K   R P PG PG+AGP GP+ A
Sbjct: 66 GTNGKRGERGP-PGPPGKAGPPGPNGA 91


>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
          Length = 1006

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 16  PAARSPG--PGSPGRAGPLGPSAAAEVRAQVHRR 47
           P  R P   PG PG A P  PS AA VR +  R+
Sbjct: 712 PPPRRPAAPPGPPGPAAPPAPSPAAPVRTRRRRK 745


>gi|27886568 interferon induced with helicase C domain 1 [Homo
           sapiens]
          Length = 1025

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 244 LQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAF 303
           LQ+ S   +  +    + K +K   SLI   CK  SVL C    +H I   +  N+   F
Sbjct: 876 LQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEF 935

Query: 304 Q 304
           +
Sbjct: 936 K 936


>gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo
           sapiens]
          Length = 233

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)

Query: 6   WRWRR-----GCSWKPAARSPGPGSPGRAGP 31
           WRWRR     G     A+R+P PG P  A P
Sbjct: 85  WRWRRRARAVGTCSPRASRAPPPGRPASASP 115


>gi|239753506 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 13 SWKPAARSPGPGSPGRAGPLGPSAAAEVRAQVHRRK 48
          +W+ + R PG G PG AG  GPS A    A+V RR+
Sbjct: 63 TWRASPR-PGRG-PGSAGRCGPSEARHREARVPRRQ 96


>gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 272

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)

Query: 6   WRWRR-----GCSWKPAARSPGPGSPGRAGP 31
           WRWRR     G     A+R+P PG P  A P
Sbjct: 85  WRWRRRARAVGTCSPRASRAPPPGRPASASP 115


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,821,128
Number of Sequences: 37866
Number of extensions: 695607
Number of successful extensions: 4585
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4491
Number of HSP's gapped (non-prelim): 117
length of query: 415
length of database: 18,247,518
effective HSP length: 105
effective length of query: 310
effective length of database: 14,271,588
effective search space: 4424192280
effective search space used: 4424192280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.