Guide to the Human Genome
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Name: PDSS2 Sequence: fasta or formatted (399aa) NCBI GI: 169808399
Description:

prenyl diphosphate synthase, subunit 2

Referenced in:

Oxidative Phosphorylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         33           2
 C cysteine            1.5          6           1
 D aspartate           4.0         16           2
 E glutamate           5.3         21           1
 F phenylalanine       3.0         12           1
 G glycine             6.3         25           1
 H histidine           3.3         13           1
 I isoleucine          5.3         21           1
 K lysine              5.3         21           1
 L leucine            12.8         51           3
 M methionine          2.8         11           1
 N asparagine          4.8         19           1
 P proline             3.0         12           2
 Q glutamine           4.8         19           1
 R arginine            4.8         19           2
 S serine             11.0         44           2
 T threonine           4.0         16           2
 V valine              6.0         24           2
 W tryptophan          1.8          7           2
 Y tyrosine            2.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prenyl diphosphate synthase, subunit 2 
PDSS1                 0.086   prenyl diphosphate synthase, subunit 1 
STK32B                0.008   serine/threonine kinase 32B 
CEP250                0.007   centrosomal protein 2 
CAMKK2                0.007   calcium/calmodulin-dependent protein kinase kinase 2...
CAMKK2                0.007   calcium/calmodulin-dependent protein kinase kinase 2...
CAMKK2                0.007   calcium/calmodulin-dependent protein kinase kinase 2...
CAMKK2                0.007   calcium/calmodulin-dependent protein kinase kinase 2...
CAMKK2                0.007   calcium/calmodulin-dependent protein kinase kinase 2...
CAMKK2                0.007   calcium/calmodulin-dependent protein kinase kinase 2...
CAMKK2                0.007   calcium/calmodulin-dependent protein kinase kinase 2...
EMILIN1               0.007   elastin microfibril interfacer 1 
RLBP1L2               0.007   retinaldehyde binding protein 1-like 2 
LOC100289720          0.005   PREDICTED: hypothetical protein XP_002347139 
LOC100288842          0.005   PREDICTED: hypothetical protein XP_002342992 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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