Guide to the Human Genome
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Name: FCN2 Sequence: fasta or formatted (275aa) NCBI GI: 8051586
Description:

ficolin 2 isoform b precursor

Referenced in:

Collagen

Other entries for this name:
alt prot [313aa] ficolin 2 isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         21           2
 C cysteine            2.5          7           1
 D aspartate           7.3         20           1
 E glutamate           3.6         10           1
 F phenylalanine       5.1         14           1
 G glycine            12.4         34           3
 H histidine           2.2          6           1
 I isoleucine          1.1          3           1
 K lysine              4.4         12           1
 L leucine             9.1         25           3
 M methionine          1.8          5           1
 N asparagine          5.8         16           2
 P proline             5.5         15           2
 Q glutamine           3.3          9           1
 R arginine            5.1         14           2
 S serine              5.5         15           1
 T threonine           5.5         15           1
 V valine              5.5         15           1
 W tryptophan          2.9          8           2
 Y tyrosine            4.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ficolin 2 isoform b precursor 
FCN2                  0.966   ficolin 2 isoform a precursor 
FCN1                  0.713   ficolin 1 precursor 
FCN3                  0.451   ficolin 3 isoform 1 precursor 
FCN3                  0.446   ficolin 3 isoform 2 precursor 
FIBCD1                0.369   fibrinogen C domain containing 1 
FIBCD1                0.369   fibrinogen C domain containing 1 
MFAP4                 0.349   microfibrillar-associated protein 4 
TNR                   0.330   tenascin R 
TNN                   0.307   tenascin N 
TNXB                  0.303   tenascin XB isoform 2 
TNXB                  0.303   tenascin XB isoform 1 precursor 
TNC                   0.302   tenascin C precursor 
ANGPTL7               0.298   angiopoietin-like 7 
ANGPTL2               0.295   angiopoietin-like 2 precursor 
ANGPTL1               0.286   angiopoietin-like 1 precursor 
FGL1                  0.277   fibrinogen-like 1 precursor 
FGL1                  0.277   fibrinogen-like 1 precursor 
FGL1                  0.277   fibrinogen-like 1 precursor 
FGL1                  0.277   fibrinogen-like 1 precursor 
ANGPT1                0.268   angiopoietin 1 
ANGPTL6               0.257   angiopoietin-like 6 
FGA                   0.250   fibrinogen, alpha polypeptide isoform alpha-E preprop...
FGG                   0.245   fibrinogen, gamma chain isoform gamma-B precursor [H...
FGG                   0.245   fibrinogen, gamma chain isoform gamma-A precursor [H...
ANGPT4                0.243   angiopoietin 4 
ANGPT2                0.242   angiopoietin 2 isoform c precursor 
ANGPT2                0.242   angiopoietin 2 isoform b precursor 
ANGPT2                0.242   angiopoietin 2 isoform a precursor 
FGL2                  0.240   fibrinogen-like 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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