GGPS1 36460

Name: GGPS1	Sequence: fasta or formatted (300aa)		NCBI GI: 83700220
Description: geranylgeranyl diphosphate synthase 1 isoform A		Referenced in: Prenylation and Related Modifications
Other entries for this name: alt mRNA [300aa] geranylgeranyl diphosphate synthase 1 isoform A alt prot [246aa] geranylgeranyl diphosphate synthase 1 isoform B
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.3 13 1 C cysteine 1.0 3 1 D aspartate 5.3 16 2 E glutamate 9.0 27 3 F phenylalanine 4.3 13 2 G glycine 5.0 15 2 H histidine 3.0 9 1 I isoleucine 5.7 17 3 K lysine 8.0 24 2 L leucine 13.3 40 2 M methionine 1.7 5 1 N asparagine 4.7 14 1 P proline 3.7 11 1 Q glutamine 5.3 16 1 R arginine 4.0 12 2 S serine 5.0 15 1 T threonine 5.3 16 1 V valine 5.3 16 1 W tryptophan 1.0 3 1 Y tyrosine 5.0 15 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 geranylgeranyl diphosphate synthase 1 isoform A [Hom... GGPS1 1.000 geranylgeranyl diphosphate synthase 1 isoform A [Homo... GGPS1 0.818 geranylgeranyl diphosphate synthase 1 isoform B [Hom... PDSS1 0.041 prenyl diphosphate synthase, subunit 1 FDPS 0.034 farnesyl diphosphate synthase isoform b FDPS 0.034 farnesyl diphosphate synthase isoform a FDPS 0.034 farnesyl diphosphate synthase isoform a TRIP11 0.009 thyroid hormone receptor interactor 11 ERAP1 0.007 type 1 tumor necrosis factor receptor shedding amino... ERAP1 0.007 type 1 tumor necrosis factor receptor shedding amino... SLCO2A1 0.007 solute carrier organic anion transporter family, me... FAT3 0.007 FAT tumor suppressor homolog 3 FASTKD5 0.007 FAST kinase domains 5 ITSN2 0.007 intersectin 2 isoform 1 ITSN2 0.007 intersectin 2 isoform 2 FLJ32810 0.007 Rho-type GTPase-activating protein FLJ32810 CSF3 0.007 colony stimulating factor 3 isoform c CSF3 0.007 colony stimulating factor 3 isoform b precursor [Hom... CSF3 0.007 colony stimulating factor 3 isoform a precursor [Homo... PRG-3 0.007 plasticity related gene 3 PRG-3 0.007 plasticity related gene 3 RAD50 0.005 RAD50 homolog isoform 2 RAD50 0.005 RAD50 homolog isoform 1 WWC3 0.005 WWC family member 3 ANKRD11 0.005 ankyrin repeat domain 11 PTPN23 0.005 protein tyrosine phosphatase, non-receptor type 23 [... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.