Guide to the Human Genome
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Name: LOC100289224 Sequence: fasta or formatted (228aa) NCBI GI: 239743781
Description:

PREDICTED: hypothetical protein XP_002344297

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         10           1
 C cysteine            1.3          3           1
 D aspartate           4.8         11           1
 E glutamate           6.1         14           1
 F phenylalanine       1.3          3           2
 G glycine             9.6         22           1
 H histidine           3.9          9           1
 I isoleucine          1.8          4           1
 K lysine              3.5          8           2
 L leucine             5.7         13           2
 M methionine          0.4          1           1
 N asparagine          1.3          3           1
 P proline            12.7         29           2
 Q glutamine           7.0         16           2
 R arginine           14.5         33           2
 S serine              5.7         13           3
 T threonine          11.0         25           1
 V valine              3.1          7           2
 W tryptophan          1.3          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344297 
LOC100292121          0.083   PREDICTED: similar to Protein FAM27D1 
FAM27E3               0.072   PREDICTED: family with sequence similarity 27, memb...
MAPK7                 0.070   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.070   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.070   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.070   mitogen-activated protein kinase 7 isoform 2 
LOC100131001          0.065   PREDICTED: hypothetical protein 
LOC100132144          0.065   PREDICTED: similar to Protein FAM27D1 
LOC100132439          0.065   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.063   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.063   PREDICTED: similar to Protein FAM27E2 
LOC100130830          0.063   PREDICTED: similar to Protein FAM27E2 
LOC100132859          0.063   PREDICTED: similar to Protein FAM27D1 
LOC100293262          0.061   PREDICTED: similar to Protein FAM27D1 
LOC100289697          0.061   PREDICTED: hypothetical protein XP_002346920 
LOC100287633          0.061   PREDICTED: hypothetical protein XP_002342769 
LOC100287633          0.061   PREDICTED: similar to Protein FAM27D1 
LOC100132144          0.059   PREDICTED: similar to family with sequence similari...
LOC100290475          0.057   PREDICTED: hypothetical protein XP_002347092 
LOC100287410          0.057   PREDICTED: hypothetical protein XP_002342959 
ZC3H13                0.054   zinc finger CCCH-type containing 13 
LOC100287368          0.048   PREDICTED: hypothetical protein XP_002342958 
LOC100291805          0.043   PREDICTED: similar to Protein FAM27D1 
LOC100289998          0.043   PREDICTED: hypothetical protein XP_002347358 
LOC100287921          0.043   PREDICTED: hypothetical protein XP_002344254 
LOC100170229          0.041   hypothetical protein LOC100170229 
LOC100288837          0.041   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100286959          0.037   PREDICTED: hypothetical protein XP_002343921 
ZC3H18                0.037   zinc finger CCCH-type containing 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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