GGPS1 36461

Name: GGPS1	Sequence: fasta or formatted (246aa)		NCBI GI: 83700223
Description: geranylgeranyl diphosphate synthase 1 isoform B		Referenced in: Prenylation and Related Modifications
Other entries for this name: alt prot [300aa] geranylgeranyl diphosphate synthase 1 isoform A alt prot [300aa] geranylgeranyl diphosphate synthase 1 isoform A
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 12 1 C cysteine 1.2 3 1 D aspartate 6.1 15 2 E glutamate 8.5 21 3 F phenylalanine 4.9 12 2 G glycine 5.7 14 2 H histidine 3.3 8 1 I isoleucine 5.3 13 1 K lysine 7.3 18 2 L leucine 13.0 32 2 M methionine 1.6 4 1 N asparagine 5.3 13 1 P proline 3.3 8 1 Q glutamine 4.1 10 1 R arginine 4.1 10 2 S serine 5.7 14 1 T threonine 4.9 12 1 V valine 4.9 12 1 W tryptophan 0.8 2 1 Y tyrosine 5.3 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 geranylgeranyl diphosphate synthase 1 isoform B [Hom... GGPS1 1.000 geranylgeranyl diphosphate synthase 1 isoform A [Hom... GGPS1 1.000 geranylgeranyl diphosphate synthase 1 isoform A [Homo... PDSS1 0.042 prenyl diphosphate synthase, subunit 1 FDPS 0.038 farnesyl diphosphate synthase isoform b FDPS 0.038 farnesyl diphosphate synthase isoform a FDPS 0.038 farnesyl diphosphate synthase isoform a TRIP11 0.011 thyroid hormone receptor interactor 11 FASTKD5 0.008 FAST kinase domains 5 FLJ32810 0.008 Rho-type GTPase-activating protein FLJ32810 CSF3 0.008 colony stimulating factor 3 isoform c CSF3 0.008 colony stimulating factor 3 isoform b precursor [Hom... CSF3 0.008 colony stimulating factor 3 isoform a precursor [Homo... RAD50 0.006 RAD50 homolog isoform 2 RAD50 0.006 RAD50 homolog isoform 1 WWC3 0.006 WWC family member 3 ANKRD11 0.006 ankyrin repeat domain 11 PTPN23 0.006 protein tyrosine phosphatase, non-receptor type 23 [... PRG-3 0.006 plasticity related gene 3 PRG-3 0.006 plasticity related gene 3 RFC1 0.006 replication factor C large subunit GRIK4 0.006 glutamate receptor KA1 precursor PSMD13 0.006 proteasome 26S non-ATPase subunit 13 isoform 2 [Hom... PSMD13 0.006 proteasome 26S non-ATPase subunit 13 isoform 1 [Hom... KIAA0430 0.006 limkain b1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.