FDPS 28638

Name: FDPS	Sequence: fasta or formatted (419aa)		NCBI GI: 4503685
Description: farnesyl diphosphate synthase isoform a		Referenced in: Cholesterol Biosynthesis
Other entries for this name: alt mRNA [419aa] farnesyl diphosphate synthase isoform a alt prot [353aa] farnesyl diphosphate synthase isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.6 36 3 C cysteine 2.1 9 1 D aspartate 5.5 23 2 E glutamate 7.2 30 2 F phenylalanine 3.6 15 2 G glycine 5.5 23 2 H histidine 1.4 6 1 I isoleucine 5.0 21 1 K lysine 5.3 22 2 L leucine 11.9 50 2 M methionine 1.9 8 1 N asparagine 2.6 11 1 P proline 4.5 19 2 Q glutamine 6.2 26 1 R arginine 6.2 26 2 S serine 4.8 20 2 T threonine 3.1 13 1 V valine 6.4 27 3 W tryptophan 2.4 10 1 Y tyrosine 5.7 24 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 farnesyl diphosphate synthase isoform a FDPS 1.000 farnesyl diphosphate synthase isoform a FDPS 0.825 farnesyl diphosphate synthase isoform b GGPS1 0.024 geranylgeranyl diphosphate synthase 1 isoform A [Hom... GGPS1 0.024 geranylgeranyl diphosphate synthase 1 isoform A [Homo... GGPS1 0.022 geranylgeranyl diphosphate synthase 1 isoform B [Hom... PDSS1 0.011 prenyl diphosphate synthase, subunit 1 HAUS6 0.008 HAUS augmin-like complex, subunit 6 PTGER3 0.007 prostaglandin E receptor 3, subtype EP3 isoform 3 [H... LOC390561 0.006 PREDICTED: similar to hect domain and RLD 2 LOC390561 0.006 PREDICTED: similar to hect domain and RLD 2 LOC390561 0.006 PREDICTED: similar to hect domain and RLD 2 PTGER3 0.006 prostaglandin E receptor 3, subtype EP3 isoform 2 [H... CDCA2 0.005 cell division cycle associated 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.