Guide to the Human Genome
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Name: LOC653543 Sequence: fasta or formatted (485aa) NCBI GI: 194272216
Description:

double homeobox, 4-like

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.9         82           2
 C cysteine            1.4          7           1
 D aspartate           1.9          9           1
 E glutamate           6.6         32           3
 F phenylalanine       2.1         10           1
 G glycine            10.3         50           3
 H histidine           1.9          9           1
 I isoleucine          1.6          8           1
 K lysine              1.0          5           1
 L leucine             8.7         42           3
 M methionine          0.6          3           1
 N asparagine          0.6          3           1
 P proline            14.8         72           3
 Q glutamine           7.2         35           2
 R arginine            9.1         44           4
 S serine              6.2         30           1
 T threonine           2.7         13           1
 V valine              2.9         14           1
 W tryptophan          2.9         14           2
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   double homeobox, 4-like 
LOC653548             1.000   PREDICTED: double homeobox, 4-like 
DUX4                  1.000   double homeobox, 4 
LOC728410             1.000   double homeobox, 4-like 
LOC653545             1.000   double homeobox, 4-like 
LOC653544             1.000   double homeobox, 4-like 
LOC441056             0.990   PREDICTED: double homeobox, 4-like 
LOC440017             0.985   PREDICTED: similar to double homeobox, 4 
LOC728022             0.985   PREDICTED: similar to double homeobox, 4 
LOC399839             0.985   PREDICTED: similar to double homeobox, 4 
LOC440013             0.985   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.984   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.983   PREDICTED: similar to double homeobox, 4 
HPX-2                 0.716   PREDICTED: similar to double homeobox, 4 
LOC652119             0.682   PREDICTED: similar to putative DUX4 protein 
LOC652119             0.681   PREDICTED: similar to putative DUX4 protein 
HPX-2                 0.674   PREDICTED: similar to double homeobox, 4 
LOC100290397          0.501   PREDICTED: hypothetical protein XP_002348309, parti...
LOC100288801          0.413   PREDICTED: hypothetical protein XP_002342402 
LOC652586             0.375   PREDICTED: similar to facioscapulohumeral muscular ...
LOC100290743          0.360   PREDICTED: hypothetical protein XP_002346688 
LOC100134409          0.355   PREDICTED: similar to facioscapulohumeral muscular ...
DUX3                  0.303   double homeobox, 3 
DUX5                  0.301   double homeobox, 5 
DUX1                  0.256   double homeobox, 1 
LOC100292644          0.161   PREDICTED: similar to facioscapulohumeral muscular ...
DUXA                  0.091   double homeobox A 
LOC100291517          0.083   PREDICTED: hypothetical protein XP_002347726 
LOC100289629          0.083   PREDICTED: hypothetical protein XP_002344158 
UNCX                  0.053   UNC homeobox 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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