Guide to the Human Genome
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Name: GATA3 Sequence: fasta or formatted (444aa) NCBI GI: 50541959
Description:

GATA binding protein 3 isoform 1

Referenced in:

Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [443aa] GATA binding protein 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         25           2
 C cysteine            2.7         12           1
 D aspartate           3.2         14           1
 E glutamate           2.5         11           2
 F phenylalanine       2.3         10           1
 G glycine             8.1         36           2
 H histidine           7.0         31           3
 I isoleucine          1.6          7           1
 K lysine              4.7         21           2
 L leucine             7.9         35           2
 M methionine          2.7         12           1
 N asparagine          4.1         18           1
 P proline            11.5         51           2
 Q glutamine           2.5         11           1
 R arginine            5.0         22           2
 S serine             14.0         62           4
 T threonine           6.8         30           5
 V valine              3.8         17           1
 W tryptophan          1.1          5           1
 Y tyrosine            3.2         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GATA binding protein 3 isoform 1 
GATA3                 0.992   GATA binding protein 3 isoform 2 
GATA2                 0.592   GATA binding protein 2 isoform 1 
GATA2                 0.592   GATA binding protein 2 isoform 1 
GATA2                 0.552   GATA binding protein 2 isoform 2 
GATA1                 0.226   GATA binding protein 1 
GATA4                 0.206   GATA binding protein 4 
GATA5                 0.200   GATA binding protein 5 
GATA6                 0.194   GATA binding protein 6 
TRPS1                 0.055   zinc finger transcription factor TRPS1 
MUC6                  0.032   mucin 6, gastric 
GLP-1                 0.025   GATA like protein-1 
ATN1                  0.023   atrophin-1 
ATN1                  0.023   atrophin-1 
LOC100133761          0.022   PREDICTED: similar to Mucin-6, partial 
MUC12                 0.016   PREDICTED: mucin 12 
MUC12                 0.016   PREDICTED: mucin 12, cell surface associated 
MUC12                 0.014   PREDICTED: mucin 12 
LOC728503             0.014   PREDICTED: hypothetical protein 
LOC100133756          0.014   PREDICTED: hypothetical protein, partial 
LOC728503             0.014   PREDICTED: hypothetical protein 
LOC728503             0.014   PREDICTED: hypothetical protein 
MUC4                  0.014   mucin 4 isoform a 
FLJ10404              0.014   hypothetical protein LOC54540 
PRRT1                 0.013   NG5 protein 
SSBP3                 0.013   single stranded DNA binding protein 3 isoform a [Hom...
UNCX                  0.013   UNC homeobox 
FOXO4                 0.013   forkhead box O4 
LOC100293557          0.013   PREDICTED: hypothetical protein 
ARID1A                0.013   AT rich interactive domain 1A isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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