Guide to the Human Genome
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Name: GLP-1 Sequence: fasta or formatted (271aa) NCBI GI: 157266269
Description:

GATA like protein-1

Referenced in:

Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         19           2
 C cysteine            5.5         15           1
 D aspartate           4.4         12           1
 E glutamate           4.8         13           1
 F phenylalanine       1.1          3           1
 G glycine             8.1         22           2
 H histidine           1.5          4           1
 I isoleucine          2.2          6           2
 K lysine              4.4         12           2
 L leucine             8.1         22           3
 M methionine          0.7          2           1
 N asparagine          1.1          3           1
 P proline            12.5         34           2
 Q glutamine           6.6         18           1
 R arginine           10.0         27           2
 S serine              7.4         20           2
 T threonine           6.6         18           1
 V valine              4.8         13           1
 W tryptophan          1.8          5           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GATA like protein-1 
GATA2                 0.051   GATA binding protein 2 isoform 2 
GATA2                 0.049   GATA binding protein 2 isoform 1 
GATA2                 0.049   GATA binding protein 2 isoform 1 
GATA1                 0.043   GATA binding protein 1 
GATA3                 0.042   GATA binding protein 3 isoform 1 
GATA6                 0.040   GATA binding protein 6 
GATA4                 0.038   GATA binding protein 4 
GATA3                 0.038   GATA binding protein 3 isoform 2 
GATA5                 0.036   GATA binding protein 5 
TRPS1                 0.033   zinc finger transcription factor TRPS1 
LOC100292673          0.025   PREDICTED: hypothetical protein 
LOC100291194          0.025   PREDICTED: hypothetical protein XP_002348117 
LOC100288065          0.025   PREDICTED: hypothetical protein XP_002344233 
SGSM2                 0.022   RUN and TBC1 domain containing 1 isoform 2 
SGSM2                 0.022   RUN and TBC1 domain containing 1 isoform 1 
PCNXL3                0.020   pecanex-like 3 
GATAD2B               0.020   GATA zinc finger domain containing 2B 
LOC100293112          0.018   PREDICTED: hypothetical protein 
LOC100288817          0.018   PREDICTED: hypothetical protein 
LOC100288817          0.018   PREDICTED: hypothetical protein XP_002343307 
LHX8                  0.016   LIM homeobox 8 
ANKRD43               0.016   ankyrin repeat domain 43 
MAP3K11               0.014   mitogen-activated protein kinase kinase kinase 11 [Ho...
GATAD2A               0.014   GATA zinc finger domain containing 2A 
SEC24C                0.014   SEC24-related protein C 
SEC24C                0.014   SEC24-related protein C 
LOC643355             0.013   PREDICTED: hypothetical protein 
ASAP2                 0.013   ArfGAP with SH3 domain, ankyrin repeat and PH domain ...
MTA3                  0.013   metastasis associated 1 family, member 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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