Guide to the Human Genome
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Name: GATA2 Sequence: fasta or formatted (480aa) NCBI GI: 224611699
Description:

GATA binding protein 2 isoform 1

Referenced in:

Hematopoiesis and Erythrocytes

Other entries for this name:
alt mRNA [480aa] GATA binding protein 2 isoform 1
alt prot [466aa] GATA binding protein 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         53           4
 C cysteine            2.7         13           2
 D aspartate           2.3         11           1
 E glutamate           3.1         15           2
 F phenylalanine       2.5         12           2
 G glycine            10.4         50           3
 H histidine           6.2         30           3
 I isoleucine          1.0          5           1
 K lysine              4.6         22           2
 L leucine             7.1         34           2
 M methionine          2.9         14           1
 N asparagine          3.8         18           1
 P proline            11.2         54           2
 Q glutamine           2.5         12           1
 R arginine            4.6         22           2
 S serine             10.8         52           3
 T threonine           5.8         28           5
 V valine              3.5         17           1
 W tryptophan          1.0          5           1
 Y tyrosine            2.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GATA binding protein 2 isoform 1 
GATA2                 1.000   GATA binding protein 2 isoform 1 
GATA2                 0.960   GATA binding protein 2 isoform 2 
GATA3                 0.550   GATA binding protein 3 isoform 1 
GATA3                 0.544   GATA binding protein 3 isoform 2 
GATA1                 0.218   GATA binding protein 1 
GATA4                 0.215   GATA binding protein 4 
GATA5                 0.199   GATA binding protein 5 
GATA6                 0.197   GATA binding protein 6 
TRPS1                 0.053   zinc finger transcription factor TRPS1 
SEC24C                0.030   SEC24-related protein C 
SEC24C                0.030   SEC24-related protein C 
ZIC5                  0.028   zinc finger protein of the cerebellum 5 
GLP-1                 0.027   GATA like protein-1 
SOX11                 0.020   SRY-box 11 
ONECUT2               0.020   one cut domain, family member 2 
ARX                   0.020   aristaless related homeobox 
ZBTB4                 0.020   zinc finger and BTB domain containing 4 
ZBTB4                 0.020   zinc finger and BTB domain containing 4 
ZSWIM6                0.019   zinc finger, SWIM-type containing 6 
CNOT3                 0.019   CCR4-NOT transcription complex, subunit 3 
MAF                   0.018   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.018   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
MUC6                  0.018   mucin 6, gastric 
SRRM2                 0.017   splicing coactivator subunit SRm300 
PRR12                 0.017   proline rich 12 
PHOX2B                0.017   paired-like homeobox 2b 
ARID1A                0.017   AT rich interactive domain 1A isoform a 
ARID1A                0.017   AT rich interactive domain 1A isoform b 
POU3F3                0.017   POU class 3 homeobox 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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