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Search of human proteins with 50513243
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50513243 anthrax toxin receptor 2 isoform 1 [Homo sapiens]
(488 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50513243 anthrax toxin receptor 2 isoform 1 [Homo sapiens] 981 0.0
gi|224809466 anthrax toxin receptor 2 isoform 2 [Homo sapiens] 956 0.0
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s... 548 e-156
gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo s... 372 e-103
gi|16933553 anthrax toxin receptor 1 isoform 3 precursor [Homo s... 311 9e-85
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 55 1e-07
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 52 1e-06
gi|34452173 integrin alpha X precursor [Homo sapiens] 50 6e-06
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 47 4e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 4e-04
gi|31542984 inter-alpha (globulin) inhibitor H4 [Homo sapiens] 40 0.005
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 39 0.008
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 39 0.014
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 39 0.014
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 38 0.018
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 38 0.018
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 38 0.018
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 37 0.031
gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens] 37 0.041
gi|27754776 ficolin 3 isoform 1 precursor [Homo sapiens] 37 0.041
gi|11321565 matrilin 3 precursor [Homo sapiens] 37 0.041
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens] 37 0.041
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 36 0.069
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 36 0.069
gi|210032580 SET domain containing 1B [Homo sapiens] 36 0.090
gi|150036262 chloride channel accessory 4 [Homo sapiens] 35 0.12
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 35 0.12
gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens] 35 0.15
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 35 0.15
gi|123701326 zinc finger protein 831 [Homo sapiens] 35 0.15
>gi|50513243 anthrax toxin receptor 2 isoform 1 [Homo sapiens]
Length = 488
Score = 981 bits (2536), Expect = 0.0
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 1 MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI 60
MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI
Sbjct: 1 MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI 60
Query: 61 EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI 120
EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI
Sbjct: 61 EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI 120
Query: 121 HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD
Sbjct: 121 HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS
Sbjct: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG
Sbjct: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
Query: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP
Sbjct: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
Query: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420
KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE
Sbjct: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420
Query: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDEGRCI 480
ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDEGRCI
Sbjct: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDEGRCI 480
Query: 481 NFSRVPSQ 488
NFSRVPSQ
Sbjct: 481 NFSRVPSQ 488
>gi|224809466 anthrax toxin receptor 2 isoform 2 [Homo sapiens]
Length = 489
Score = 956 bits (2471), Expect = 0.0
Identities = 476/476 (100%), Positives = 476/476 (100%)
Query: 1 MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI 60
MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI
Sbjct: 1 MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI 60
Query: 61 EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI 120
EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI
Sbjct: 61 EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI 120
Query: 121 HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD
Sbjct: 121 HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS
Sbjct: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG
Sbjct: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
Query: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP
Sbjct: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
Query: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420
KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE
Sbjct: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420
Query: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDE 476
ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDE
Sbjct: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDE 476
>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
sapiens]
Length = 564
Score = 548 bits (1412), Expect = e-156
Identities = 273/485 (56%), Positives = 349/485 (71%), Gaps = 3/485 (0%)
Query: 3 AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62
AER WL +L+ +G GG R P+C FDLYF+LDKSGSV ++W EI
Sbjct: 4 AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62
Query: 63 YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122
Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63 YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122
Query: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
G + A+EQI + G +T+S+IIALTDG+L + Y+E+EA SR LGA VYCVGV D
Sbjct: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182
Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
F + QL RIADSK+ VFPV GFQAL+GII+SIL +SC EIL +PS++C GE FQ+V+
Sbjct: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242
Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
G GF VLC++ +N++ T + KP SV+ +LCPAPIL + G + VS N G
Sbjct: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302
Query: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
S IS S+I+T T CS+G I +L+L LLL + L+WWFWPLCC V+IK+ PPPPA
Sbjct: 303 LSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPAEES 362
Query: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420
+EE+++ LP KKWPTVDASYYGGRGVGGIKRMEVRWG+KGSTEEGA+LEKAKNA VK+PE
Sbjct: 363 EEEDDDGLPKKKWPTVDASYYGGRGVGGIKRMEVRWGEKGSTEEGAKLEKAKNARVKMPE 422
Query: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDEGRCI 480
+ E PR KWY+PIKG+LDALW LLR+ YDRVS+MRPQ GD GRCI
Sbjct: 423 QEYEFPEPRNLNNNMRRPSSPRKWYSPIKGKLDALWVLLRKGYDRVSVMRPQPGDTGRCI 482
Query: 481 NFSRV 485
NF+RV
Sbjct: 483 NFTRV 487
>gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo
sapiens]
Length = 368
Score = 372 bits (956), Expect = e-103
Identities = 190/366 (51%), Positives = 253/366 (69%), Gaps = 7/366 (1%)
Query: 3 AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62
AER WL +L+ +G GG R P+C FDLYF+LDKSGSV ++W EI
Sbjct: 4 AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62
Query: 63 YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122
Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63 YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122
Query: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
G + A+EQI + G +T+S+IIALTDG+L + Y+E+EA SR LGA VYCVGV D
Sbjct: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182
Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
F + QL RIADSK+ VFPV GFQAL+GII+SIL +SC EIL +PS++C GE FQ+V+
Sbjct: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242
Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
G GF VLC++ +N++ T + KP SV+ +LCPAPIL + G + VS N G
Sbjct: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302
Query: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
S IS S+I+T T CS+G I +L+L LLL + L+WWFWPLCC V+IK+ PPPPA
Sbjct: 303 LSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPA--- 359
Query: 361 KEEEEE 366
EE EE
Sbjct: 360 -EESEE 364
>gi|16933553 anthrax toxin receptor 1 isoform 3 precursor [Homo
sapiens]
Length = 333
Score = 311 bits (797), Expect = 9e-85
Identities = 162/316 (51%), Positives = 218/316 (68%), Gaps = 3/316 (0%)
Query: 3 AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62
AER WL +L+ +G GG R P+C FDLYF+LDKSGSV ++W EI
Sbjct: 4 AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62
Query: 63 YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122
Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63 YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122
Query: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
G + A+EQI + G +T+S+IIALTDG+L + Y+E+EA SR LGA VYCVGV D
Sbjct: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182
Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
F + QL RIADSK+ VFPV GFQAL+GII+SIL +SC EIL +PS++C GE FQ+V+
Sbjct: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242
Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
G GF VLC++ +N++ T + KP SV+ +LCPAPIL + G + VS N G
Sbjct: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302
Query: 301 KSVISGSLIVTATECS 316
S IS S+I+T T CS
Sbjct: 303 LSFISSSVIITTTHCS 318
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 55.1 bits (131), Expect = 1e-07
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 27/242 (11%)
Query: 44 DLYFVLDKSGSV-ANNWIEIYNFVQQLAERF-VSP-EMRLSFIVFSSQATIILPLT--GD 98
D+Y ++D SGS A ++ E+ F+ ++ F ++P ++R+ + ++ + + +
Sbjct: 436 DIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSN 495
Query: 99 RGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAG---GLKTSSIIIALTDG--KLDG 153
+ + K +E+++++ G T L +QKA G K ++ LT+G K
Sbjct: 496 KQDLGKAIENIRQMG--GNTNTGAALNFTLSLLQKAKKQRGNKVPCHLVVLTNGMSKDSI 553
Query: 154 LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSI 213
L P+ +E I VY +G+ + Q QL IA +++V+ V F ALK I N +
Sbjct: 554 LEPANRLREEHIR------VYAIGIKEANQTQLREIAGEEKRVYYVH-DFDALKDIRNQV 606
Query: 214 LAQSCTEILELQPSSVCVGEEFQIV-LSGRGFMLGSRNGSVLCTYTVNETYTTSVKPVSV 272
+ + CTE C + I+ L +G N S + T+ N + + P V
Sbjct: 607 VQEICTE-------EACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRV 659
Query: 273 QL 274
Q+
Sbjct: 660 QI 661
Score = 48.5 bits (114), Expect = 1e-05
Identities = 69/270 (25%), Positives = 112/270 (41%), Gaps = 44/270 (16%)
Query: 44 DLYFVLDKSGSVA-NNWIEIYNFVQQLAERF-VS-PEMRLSFIVFSSQATIILPLTGDRG 100
DL F++D S S+ N++ ++ F+ + + F VS +R+ FS PL G
Sbjct: 1000 DLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIG 1059
Query: 101 K--ISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLK----TSSIIIALTDGKLDGL 154
+ IS +E++K++ G T+I L+ + G + T +++ LTDG+
Sbjct: 1060 EKEISFQIENIKQI--FGNTHIGAALREVEHYFRPDMGSRINTGTPQVLLVLTDGQSQDE 1117
Query: 155 VPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSIL 214
V AE R G +Y VG+ D + QL +I + E+ V F LK + I+
Sbjct: 1118 VAQAAEA----LRHRGIDIYSVGIGDVDDQQLIQITGTAEKKLTVH-NFDELKKVNKRIV 1172
Query: 215 AQSCTEILE-------LQPSSVCVGEEFQIVLSGRGFMLGSRNGSVLCTYTVNETYTTSV 267
CT E + V E+ Q +L G+ +M ETY +
Sbjct: 1173 RNICTTAGESNCFVDVVVGFDVSTQEKGQTLLEGQPWM---------------ETYLQDI 1217
Query: 268 KPVSVQLNSMLCPAPILNKAGETLDVSVSF 297
LN + C + G VSV+F
Sbjct: 1218 LRAISSLNGVSC------EVGTETQVSVAF 1241
Score = 44.7 bits (104), Expect = 2e-04
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 14/183 (7%)
Query: 44 DLYFVLDKSGSVA-NNWIEIYNFVQQLAERF-VSPE-MRLSFIVFS--SQATIILPLTGD 98
D+ F++D SGS+ N+ ++ F++ L + + P+ +++ + FS ++ L
Sbjct: 622 DIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMS 681
Query: 99 RGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTS--SIIIALTDGKLDGLVP 156
+ IS ++ + + T L ++ G + + +I +TDG+ +V
Sbjct: 682 QSDISNAIDQMAHIGQT--TLTGSALSFVSQYFSPTKGARPNIRKFLILITDGEAQDIV- 738
Query: 157 SYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQ 216
++ A + R G +Y VGV QLE I+ E VF V+ F L+ I + ++
Sbjct: 739 ---KEPAVVLRQEGVIIYSVGVFGSNVTQLEEISGRPEMVFYVE-NFDILQRIEDDLVFG 794
Query: 217 SCT 219
C+
Sbjct: 795 ICS 797
Score = 43.1 bits (100), Expect = 6e-04
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 20/202 (9%)
Query: 29 GLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSP------EMRLSF 82
G+ +E+ D+ FV+D SGS+ + YN ++ V ++R
Sbjct: 794 GICSPREECKRIEVLDVVFVIDSSGSID---YDEYNIMKDFMIGLVKKADVGKNQVRFGA 850
Query: 83 IVFSSQATIILPLT--GDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTS 140
+ ++ ++ L G + ++ L++ + + G TY E L ++ +A G + +
Sbjct: 851 LKYADDPEVLFYLDDFGTKLEVISVLQNDQAMG--GSTYTAEALGFSDHMFTEARGSRLN 908
Query: 141 ----SIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQV 196
++I +TDG+ AK R G V VG+ +L +A S ++
Sbjct: 909 KGVPQVLIVITDGESHD--ADKLNATAKALRDKGILVLAVGIDGANPVELLAMAGSSDKY 966
Query: 197 FPVKGGFQALKGIINSILAQSC 218
F V+ F LKGI + + A C
Sbjct: 967 FFVE-TFGGLKGIFSDVTASVC 987
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 52.0 bits (123), Expect = 1e-06
Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 16/197 (8%)
Query: 39 CRRA--FDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSF--IVFSSQATIIL 93
C+R D+ FVLD SGS+ + + + N L ++ R+ F + +S Q I+
Sbjct: 807 CKRITLLDVVFVLDHSGSIKKQYQDHMINLTIHLVKKADVGRDRVQFGALKYSDQPNILF 866
Query: 94 PLT--GDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLK----TSSIIIALT 147
L +R I + L KR G TY + LK AN + G + ++I +T
Sbjct: 867 YLNTYSNRSAIIENLR--KRRDTGGNTYTAKALKHANALFTEEHGSRIKQNVKQMLIVIT 924
Query: 148 DGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALK 207
DG+ A R+ G +++ VGV Q +LE +A +K V F LK
Sbjct: 925 DGESHD--HDQLNDTALELRNKGITIFAVGVGKANQKELEGMAGNKNNTIYV-DNFDKLK 981
Query: 208 GIINSILAQSCTEILEL 224
+ + + CTE E+
Sbjct: 982 DVFTLVQERMCTEAPEV 998
Score = 48.1 bits (113), Expect = 2e-05
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 24/208 (11%)
Query: 44 DLYFVLDKSGSVANNWIE-IYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLTGDRG 100
D++F++D S S+ E I F+ ++ E F + P+ +R+ + +S + +T
Sbjct: 442 DIHFLIDGSSSIQEKQFEQIKRFMLEVTEMFSIGPDKVRVGVVQYSDDTEVEFYITDYSN 501
Query: 101 KIS--KGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSI---IIALTDGKLDGLV 155
I K + ++K+++ G TY + L + I+ + S + +I LTDG V
Sbjct: 502 DIDLRKAIFNIKQLT--GGTYTGKALDYILQIIKNGMKDRMSKVPCYLIVLTDGMSTDRV 559
Query: 156 PSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSILA 215
+ AK R+ +V+ VG+ + +L+ IA +E+V F ALK I N ++
Sbjct: 560 V----EPAKRLRAEQITVHAVGIGAANKIELQEIAGKEERV-SFGQNFDALKSIKNEVVR 614
Query: 216 QSCTE---------ILELQPSSVCVGEE 234
+ C E I+ L SS +G E
Sbjct: 615 EICAEKGCEDMKADIMFLVDSSWSIGNE 642
Score = 38.9 bits (89), Expect = 0.011
Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 44 DLYFVLDKSGSVAN-NWIEIYNFVQQLAERFV--SPEMRLSFIVFSSQATIILPLTGDRG 100
D+ F++D S S+ N N+ ++ F++ L + + + ++ + FS + L +R
Sbjct: 628 DIMFLVDSSWSIGNENFRKMKIFMKNLLTKIQIGADKTQIGVVQFSDKTKEEFQL--NRY 685
Query: 101 KISKGLED-LKRVSPVGE-TYIHEGLKLANEQIQKAGG--LKTSSIIIALTDGKLDGLVP 156
+ + D + R+S + E T + L + + G L +I +TDG +
Sbjct: 686 FTQQEISDAIDRMSLINEGTLTGKALNFVGQYFTHSKGARLGAKKFLILITDG----VAQ 741
Query: 157 SYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQ 216
A+I R +++ VGV + ++QLE I+ VF V+ F LK + ++ +
Sbjct: 742 DDVRDPARILRGKDVTIFSVGVYNANRSQLEEISGDSSLVFHVE-NFDHLKALERKLIFR 800
Query: 217 SC 218
C
Sbjct: 801 VC 802
>gi|34452173 integrin alpha X precursor [Homo sapiens]
Length = 1163
Score = 49.7 bits (117), Expect = 6e-06
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 22/239 (9%)
Query: 21 LLVLSGPGGL---LRAQEQPSCRRAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERFVSP 76
L L GP L L Q R+ D+ F++D SGS+++ N+ + NFV+ + +F P
Sbjct: 125 LCFLLGPTQLTQRLPVSRQECPRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRP 184
Query: 77 EMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPV-GETYIHEGLK-LANEQIQKA 134
+ S + FS++ R + S L L V + G TY ++ + + +
Sbjct: 185 STQFSLMQFSNKFQTHFTFEEFR-RSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHAS 243
Query: 135 GGLK--TSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGV-LDFEQ----AQLE 187
G + + I+I +TDGK +G Y + ++ + G Y +GV L F+ +L
Sbjct: 244 YGARRDAAKILIVITDGKKEGDSLDYKD-VIPMADAAGIIRYAIGVGLAFQNRNSWKELN 302
Query: 188 RIAD--SKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLSGRGF 244
IA S+E +F V+ F ALK I N Q +I ++ + F++ ++ GF
Sbjct: 303 DIASKPSQEHIFKVE-DFDALKDIQN----QLKEKIFAIEGTETTSSSSFELEMAQEGF 356
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 47.0 bits (110), Expect = 4e-05
Identities = 64/231 (27%), Positives = 97/231 (41%), Gaps = 22/231 (9%)
Query: 19 LWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERF-VSP 76
LW+L+L GG +AQ +DL F+LD S SV E + +V L + F V P
Sbjct: 13 LWMLLLWSGGGGCQAQRAGCKSVHYDLVFLLDTSSSVGKEDFEKVRQWVANLVDTFEVGP 72
Query: 77 E-MRLSFIVFSSQATII--LPLTGDRGKISKGLEDLKRVSPVGETYIHEGLK--LANEQI 131
+ R+ + +S + T L L G + ++ L G T + L+ A
Sbjct: 73 DRTRVGVVRYSDRPTTAFELGLFGSQEEVKAAARRLAYHG--GNTNTGDALRYITARSFS 130
Query: 132 QKAGGLKT----SSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLE 187
AGG + I LTDG+ LV A + G ++ VGV + + +LE
Sbjct: 131 PHAGGRPRDRAYKQVAILLTDGRSQDLVLD----AAAAAHRAGIRIFAVGVGEALKEELE 186
Query: 188 RIADSKE--QVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQ 236
IA + VF V F A+ I + + C + L PS G+ F+
Sbjct: 187 EIASEPKSAHVFHV-SDFNAIDKIRGKLRRRLCENV--LCPSVRVEGDRFK 234
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 43.5 bits (101), Expect = 4e-04
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 22/204 (10%)
Query: 31 LRAQ--EQPSCRRAF--DLYFVLDKSGSVA-NNWIEIYNFVQQLAERFVSPE----MRLS 81
+RAQ E+ +C R + D+ F+LD S S+ +N+ E+ +F++ L F +R +
Sbjct: 21 VRAQHRERVTCTRLYAADIVFLLDGSSSIGRSNFREVRSFLEGLVLPFSGAASAQGVRFA 80
Query: 82 FIVFSS--QATIILPLTGDRGKISKGLEDLKRV---SPVGETYIHEGLKLANEQIQKAGG 136
+ +S + L G G + + + +L + G +H + Q+ + G
Sbjct: 81 TVQYSDDPRTEFGLDALGSGGDVIRAIRELSYKGGNTRTGAAILHVADHVFLPQLARPGV 140
Query: 137 LKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADS-KEQ 195
K + I +TDGK LV + A++ + G ++ VG+ + + +L+R+A
Sbjct: 141 PK---VCILITDGKSQDLVDTAAQR----LKGQGVKLFAVGIKNADPEELKRVASQPTSD 193
Query: 196 VFPVKGGFQALKGIINSILAQSCT 219
F F L+ ++ + + CT
Sbjct: 194 FFFFVNDFSILRTLLPLVSRRVCT 217
>gi|31542984 inter-alpha (globulin) inhibitor H4 [Homo sapiens]
Length = 930
Score = 40.0 bits (92), Expect = 0.005
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 44 DLYFVLDKSGSVANNWIEIYNFVQQLAERFV------SPEMRLSFIVFSSQATIILP--L 95
++ FV+DKSGS++ I QQ E + SP + + IVFS++AT P +
Sbjct: 274 NVVFVIDKSGSMSGRKI------QQTREALIKILDDLSPRDQFNLIVFSTEATQWRPSLV 327
Query: 96 TGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLK-----TSSIIIALTDG- 149
++K + +G T I++ + +A + + + + + S+II LTDG
Sbjct: 328 PASAENVNKARSFAAGIQALGGTNINDAMLMAVQLLDSSNQEERLPEGSVSLIILLTDGD 387
Query: 150 -KLDGLVPSYAEKEAKISRSLGASVYCVGV-LDFEQAQLERIA 190
+ P + + + S S++C+G D A LE++A
Sbjct: 388 PTVGETNPRSIQNNVREAVSGRYSLFCLGFGFDVSYAFLEKLA 430
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 39.3 bits (90), Expect = 0.008
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 350 KDPPPPPAPAPKEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLE 409
+ PPPPP P+ PLP W + G G I + + + GA
Sbjct: 505 QQPPPPPPPSSSMASSTPLP---WQQNTTTTTTSAGTGSIPPWQQQQA-AAAASPGAPQM 560
Query: 410 KAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQTKWYTPIKG 450
+ +V +P + P+ P P P P P P +G
Sbjct: 561 QGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMIPPRG 601
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 38.5 bits (88), Expect = 0.014
Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 44 DLYFVLDKSGSVAN-NWIEIYNFVQQLAERF--VSPE-MRLSFIVFSSQATIILPLT--G 97
D+ F+ D S S+ + N+ ++ F+ F +SP +++SF+ +S + L
Sbjct: 1159 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYN 1218
Query: 98 DRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQK-AGGLKTS--SIIIALTDGKLDGL 154
D+ L++++ G T + L E++ G++ + +++ +TDG+
Sbjct: 1219 DKALALGALQNIRYRG--GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDE 1276
Query: 155 VPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIAD--SKEQVFPVKGGFQALKGIINS 212
V +K A + + G SV+ VGV D + +L IA S+ VF + F++ + I ++
Sbjct: 1277 V----KKAALVIQQSGFSVFVVGVADVDYNELANIASKPSERHVF-IVDDFESFEKIEDN 1331
Query: 213 ILAQSC 218
++ C
Sbjct: 1332 LITFVC 1337
Score = 32.3 bits (72), Expect = 1.00
Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 11/189 (5%)
Query: 40 RRAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLT 96
R D+ ++D S S+ N+ + +F+ ++ E F + P+ ++++ +S L
Sbjct: 31 RAEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLN 90
Query: 97 GDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQ-IQKAGGLKTSS--IIIALTDGKLDG 153
R K S G T L +Q + G++ + I + +TDGK
Sbjct: 91 AHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQD 150
Query: 154 LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVK-GGFQALKGIINS 212
V E +K + G ++ +G+ + ++ +L+ IA + F++L I++
Sbjct: 151 DV----EAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDD 206
Query: 213 ILAQSCTEI 221
+ C +
Sbjct: 207 LTINLCNSV 215
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 38.5 bits (88), Expect = 0.014
Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 44 DLYFVLDKSGSVAN-NWIEIYNFVQQLAERF--VSPE-MRLSFIVFSSQATIILPLT--G 97
D+ F+ D S S+ + N+ ++ F+ F +SP +++SF+ +S + L
Sbjct: 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYN 2382
Query: 98 DRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQK-AGGLKTS--SIIIALTDGKLDGL 154
D+ L++++ G T + L E++ G++ + +++ +TDG+
Sbjct: 2383 DKALALGALQNIRYRG--GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDE 2440
Query: 155 VPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIAD--SKEQVFPVKGGFQALKGIINS 212
V +K A + + G SV+ VGV D + +L IA S+ VF + F++ + I ++
Sbjct: 2441 V----KKAALVIQQSGFSVFVVGVADVDYNELANIASKPSERHVF-IVDDFESFEKIEDN 2495
Query: 213 ILAQSC 218
++ C
Sbjct: 2496 LITFVC 2501
Score = 36.2 bits (82), Expect = 0.069
Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 44 DLYFVLDKSGSVA-NNWIEIYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLTGDRG 100
D+ F++D S S+ N++++ F++ L + F +SP +++S + +S L
Sbjct: 440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLK---- 495
Query: 101 KISKGLEDLKRVSPV----GETYIHEGLKLANEQI---QKAGGLKTSSIIIALTDGKLDG 153
K +K + ++ ++ G T + + E+I K ++I +TDGK
Sbjct: 496 KFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSD 555
Query: 154 LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIAD--SKEQVFPVKGGFQALKGIIN 211
++ + K+ R+ ++ VGV D +++LE IA ++ VF V+ F A + I
Sbjct: 556 ---AFRDPAIKL-RNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE-DFDAFQRISF 610
Query: 212 SILAQSCTEI 221
+ C I
Sbjct: 611 ELTQSICLRI 620
Score = 32.3 bits (72), Expect = 1.00
Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 11/189 (5%)
Query: 40 RRAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLT 96
R D+ ++D S S+ N+ + +F+ ++ E F + P+ ++++ +S L
Sbjct: 1195 RAEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLN 1254
Query: 97 GDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQ-IQKAGGLKTSS--IIIALTDGKLDG 153
R K S G T L +Q + G++ + I + +TDGK
Sbjct: 1255 AHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQD 1314
Query: 154 LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVK-GGFQALKGIINS 212
V E +K + G ++ +G+ + ++ +L+ IA + F++L I++
Sbjct: 1315 DV----EAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDD 1370
Query: 213 ILAQSCTEI 221
+ C +
Sbjct: 1371 LTINLCNSV 1379
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 38.1 bits (87), Expect = 0.018
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 21 LLVLSGPGGLLRAQEQP-----------SCRRAFD----LYFVLDKSGSVANNWIE---- 61
+L+L G G ++AQ+Q +C D +YFVLD S SV
Sbjct: 8 VLLLWGILGAIQAQQQEVISPDTTERNNNCPEKTDCPIHVYFVLDTSESVTMQSPTDILL 67
Query: 62 ------IYNFVQQLAERFVSPEMRLSF----IVFSSQATIILPLTGDRGKISKGLEDLKR 111
+ F+ QL F ++ LS+ + FS Q + P DR K L+ +
Sbjct: 68 FHMKQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFIKNLQGISS 127
Query: 112 VSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGA 171
T+ L EQI++ T + +TDG + G + +A+ +R G
Sbjct: 128 FRR--GTFTDCALANMTEQIRQDRSKGTVHFAVVITDGHVTGSPCGGIKLQAERAREEGI 185
Query: 172 SVYCVGV-LDFEQAQLERIADSKEQVF 197
++ V + ++ L IA + +++
Sbjct: 186 RLFAVAPNQNLKEQGLRDIASTPHELY 212
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 38.1 bits (87), Expect = 0.018
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 21 LLVLSGPGGLLRAQEQP-----------SCRRAFD----LYFVLDKSGSVANNWIE---- 61
+L+L G G ++AQ+Q +C D +YFVLD S SV
Sbjct: 8 VLLLWGILGAIQAQQQEVISPDTTERNNNCPEKTDCPIHVYFVLDTSESVTMQSPTDILL 67
Query: 62 ------IYNFVQQLAERFVSPEMRLSF----IVFSSQATIILPLTGDRGKISKGLEDLKR 111
+ F+ QL F ++ LS+ + FS Q + P DR K L+ +
Sbjct: 68 FHMKQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFIKNLQGISS 127
Query: 112 VSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGA 171
T+ L EQI++ T + +TDG + G + +A+ +R G
Sbjct: 128 FRR--GTFTDCALANMTEQIRQDRSKGTVHFAVVITDGHVTGSPCGGIKLQAERAREEGI 185
Query: 172 SVYCVGV-LDFEQAQLERIADSKEQVF 197
++ V + ++ L IA + +++
Sbjct: 186 RLFAVAPNQNLKEQGLRDIASTPHELY 212
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 38.1 bits (87), Expect = 0.018
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 21 LLVLSGPGGLLRAQEQP-----------SCRRAFD----LYFVLDKSGSVANNWIE---- 61
+L+L G G ++AQ+Q +C D +YFVLD S SV
Sbjct: 8 VLLLWGILGAIQAQQQEVISPDTTERNNNCPEKTDCPIHVYFVLDTSESVTMQSPTDILL 67
Query: 62 ------IYNFVQQLAERFVSPEMRLSF----IVFSSQATIILPLTGDRGKISKGLEDLKR 111
+ F+ QL F ++ LS+ + FS Q + P DR K L+ +
Sbjct: 68 FHMKQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFIKNLQGISS 127
Query: 112 VSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGA 171
T+ L EQI++ T + +TDG + G + +A+ +R G
Sbjct: 128 FRR--GTFTDCALANMTEQIRQDRSKGTVHFAVVITDGHVTGSPCGGIKLQAERAREEGI 185
Query: 172 SVYCVGV-LDFEQAQLERIADSKEQVF 197
++ V + ++ L IA + +++
Sbjct: 186 RLFAVAPNQNLKEQGLRDIASTPHELY 212
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 37.4 bits (85), Expect = 0.031
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 350 KDPPPPPAPAPKEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLE 409
+ PPPPP P+ PLP W + G G I + + + GA
Sbjct: 505 QQPPPPPPPSSSMASSTPLP---WQQNTTTTTTSAGTGSIPPWQQQQA-AAAASPGAPQM 560
Query: 410 KAKNAVVKIPEETEEPIRPRPPRPKPTHQP 439
+ +V +P + P+ P P P P P
Sbjct: 561 QGNPTMVPLPPGVQPPLPPGAPPPPPPPPP 590
>gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens]
Length = 288
Score = 37.0 bits (84), Expect = 0.041
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 14 WLFPGLWLLVLSGPGGLLRAQEQPSC 39
W+ P LWLL+L GP L+ QE PSC
Sbjct: 5 WILPSLWLLLLGGP-ACLKTQEHPSC 29
>gi|27754776 ficolin 3 isoform 1 precursor [Homo sapiens]
Length = 299
Score = 37.0 bits (84), Expect = 0.041
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 14 WLFPGLWLLVLSGPGGLLRAQEQPSC 39
W+ P LWLL+L GP L+ QE PSC
Sbjct: 5 WILPSLWLLLLGGP-ACLKTQEHPSC 29
>gi|11321565 matrilin 3 precursor [Homo sapiens]
Length = 486
Score = 37.0 bits (84), Expect = 0.041
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 6 SPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCR-RAFDLYFVLDKSGSVAN-NWIEIY 63
SP R P G S PG RA+ C+ R DL F++D S SV + ++
Sbjct: 47 SPGRRPSPAAPDGAPASGTSEPG---RARGAGVCKSRPLDLVFIIDSSRSVRPLEFTKVK 103
Query: 64 NFVQQLAERF-VSP-EMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIH 121
FV ++ + + P + R++ + ++S I L K S + + R++P+ T
Sbjct: 104 TFVSRIIDTLDIGPADTRVAVVNYASTVKIEFQLQAYTDKQSLK-QAVGRITPLS-TGTM 161
Query: 122 EGLKLANEQIQ----KAGGLKTSS----IIIALTDGKLDGLVPSYAEKEAKISRSLGASV 173
GL + + +AG + SS + I +TDG+ V A + +++ G +
Sbjct: 162 SGLAIQTAMDEAFTVEAGAREPSSNIPKVAIIVTDGRPQDQVNEVAAR----AQASGIEL 217
Query: 174 YCVGVLDFEQAQLERIADS--KEQVFPVK 200
Y VGV + A L+ +A +E VF V+
Sbjct: 218 YAVGVDRADMASLKMMASEPLEEHVFYVE 246
>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
Length = 1284
Score = 37.0 bits (84), Expect = 0.041
Identities = 45/185 (24%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 44 DLYFVLDKSGSVANNWIE-IYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLTGDRG 100
D+ F++D S S+ ++ + + +F+ + F + P+ +++ +S A L
Sbjct: 179 DMVFLVDGSWSIGHSHFQQVKDFLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLST 238
Query: 101 KISKGLEDLKRVSPVGETYIHEGLKLAN---EQIQKAGGLK--TSSIIIALTDGKLDGLV 155
K + L ++R+ G GL L + + +Q A GL+ + ++I +TDGK V
Sbjct: 239 K-EQVLAAVRRLRYKGGNTF-TGLALTHVLGQNLQPAAGLRPEAAKVVILVTDGKSQDDV 296
Query: 156 PSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQ--VFPVKGGFQ--ALKGIIN 211
+ A++ + LG +V+ VGV + ++A+L +A V V Q AL G+++
Sbjct: 297 HT----AARVLKDLGVNVFAVGVKNADEAELRLLASPPRDITVHSVLDFLQLGALAGLLS 352
Query: 212 SILAQ 216
++ Q
Sbjct: 353 RLICQ 357
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 36.2 bits (82), Expect = 0.069
Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 22/104 (21%)
Query: 352 PPPPPAP------APKEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRW--GDKGSTE 403
PPPPPAP P P P + + TV +S+ G +E R G G E
Sbjct: 837 PPPPPAPYYFDSGPPPAFSPPPPPGRAYDTVRSSFKPG--------LEARLGAGAAGLYE 888
Query: 404 EGARL------EKAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQ 441
GA L E+ K A I + P PRP P PP+
Sbjct: 889 PGAALGPLPYPERQKRARSMIILQDSAPESGDAPRPPPAATPPE 932
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 36.2 bits (82), Expect = 0.069
Identities = 32/107 (29%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 341 WPLCCKVVIKDPPPPPAPAPKEEEEEPLPTKKWPTVDASYYGGRGVG-----GIKRMEVR 395
WP V K PPP P +EE L + A G G G R E R
Sbjct: 866 WPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETR 925
Query: 396 WGDK-GSTEEGARLEKAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQ 441
WG + GS+ G E+ P PI+ PP K PP+
Sbjct: 926 WGPRPGSSRRGIPPEEP-----GAPPRRAGPIKKPPPPTKVEELPPK 967
Score = 35.0 bits (79), Expect = 0.15
Identities = 32/105 (30%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 352 PPPPPAPAPKEEEEEPL---PTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGA-- 406
PPP AP P+ E EEP P + PT GV + G ST G+
Sbjct: 534 PPPASAPTPETEPEEPAQAPPAQSTPT--------PGVAAAPTLVSGGGSTSSTSSGSFE 585
Query: 407 ----RLEKAKNAVVKIPEETEEPIRPRPPR--PK-----PTHQPP 440
+ + PEE P P P+ PK PT QPP
Sbjct: 586 ASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPP 630
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 35.8 bits (81), Expect = 0.090
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 352 PPPPPAPAPKEEEEEPLP--TKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLE 409
PPPPP P P E + P +WP+ +A G RG R EV TEE L
Sbjct: 1547 PPPPPPPPPVEPTKLPFKELDNQWPS-EAIPPGPRG-----RDEV-------TEEYMELA 1593
Query: 410 KAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQ 441
K++ + P++ E + PP P PPQ
Sbjct: 1594 KSRGPWRRPPKKRHEDL--VPPAGSPELSPPQ 1623
>gi|150036262 chloride channel accessory 4 [Homo sapiens]
Length = 919
Score = 35.4 bits (80), Expect = 0.12
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 48 VLDKSGSVANNWIEIYNFVQQLAERFVSPEMR----LSFIVFSSQATIILPL-----TGD 98
VLDKSGS+ + N + Q A+ F+ + + + F S ATI+ L + +
Sbjct: 310 VLDKSGSMGGK--DRLNRMNQAAKHFLLQTVENGSWVGMVHFDSTATIVNKLIQIKSSDE 367
Query: 99 RGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGK 150
R + GL P+G T I G+K A + I + S ++ LTDG+
Sbjct: 368 RNTLMAGLPTY----PLGGTSICSGIKYAFQVIGELHSQLDGSEVLLLTDGE 415
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 35.4 bits (80), Expect = 0.12
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 352 PPPPPAPAPKEEEEEPLPTKKWPTVDASYYGGRGVGGIK------RMEVRWGDKGSTEEG 405
P PPP P P +P + P+ AS G G K E + +G+ G
Sbjct: 780 PAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGG 839
Query: 406 ARLEKAKNAVVKIPEETEEPIRPRPPRPKPTHQP 439
E+ + P E +P PRPP P P P
Sbjct: 840 GAAEEEGVPRPRAPPEPPDPGAPRPP-PDPGPLP 872
>gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens]
Length = 496
Score = 35.0 bits (79), Expect = 0.15
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 19 LWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERF-VSP 76
L L L PG +++ R DL FV+D S SV E + F+ Q+ E V P
Sbjct: 16 LLLQALCSPGLAPQSRGHLCRTRPTDLVFVVDSSRSVRPVEFEKVKVFLSQVIESLDVGP 75
Query: 77 EM-RLSFIVFSSQATIILPLTGDRGKISKG--LEDLKRVSPVGETYIHEGLKLANEQIQK 133
R+ + ++S L R +SK L+ ++R+ P+ T GL + +
Sbjct: 76 NATRVGMVNYASTVKQEFSL---RAHVSKAALLQAVRRIQPLS-TGTMTGLAIQFAITKA 131
Query: 134 AGGLK--------TSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQ 185
G + S ++I +TDG+ V + + +R+ G ++ +GV ++A
Sbjct: 132 FGDAEGGRSRSPDISKVVIVVTDGRPQDSVQDVSAR----ARASGVELFAIGVGSVDKAT 187
Query: 186 LERIADSKE 194
L +IA +
Sbjct: 188 LRQIASEPQ 196
Score = 29.3 bits (64), Expect = 8.5
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 42 AFDLYFVLDKSGSVA-NNWIEIYNFVQQLAERF-VSPEM-RLSFIVFSSQATIILPLTGD 98
A DL F++D S SV N+ + F+ Q+ + VS ++ ++ + +SS PL
Sbjct: 273 ATDLVFLIDGSKSVRPENFELVKKFISQIVDTLDVSDKLAQVGLVQYSSSVRQEFPL--G 330
Query: 99 RGKISKGLEDLKRVSPVGE--TYIHEGLK-LANEQIQKAGGLKTSS--IIIALTDGKLDG 153
R K ++ R E T LK L + + G + + + I TDG+
Sbjct: 331 RFHTKKDIKAAVRNMSYMEKGTMTGAALKYLIDNSFTVSSGARPGAQKVGIVFTDGRSQ- 389
Query: 154 LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIA 190
Y AK ++ LG ++ VGV + + +L IA
Sbjct: 390 ---DYINDAAKKAKDLGFKMFAVGVGNAVEDELREIA 423
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 35.0 bits (79), Expect = 0.15
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 33/176 (18%)
Query: 33 AQEQPSCRRAF-------DLYFVLDKSGSVANNWIEIY------------NFVQQLAERF 73
AQ++P RA DL+FVLD S SVA ++ Y F+ L +R+
Sbjct: 19 AQDEPETPRAVAFQDCPVDLFFVLDTSESVALR-LKPYGALVDKVKSFTKRFIDNLRDRY 77
Query: 74 VSPEMRLSF----IVFSSQATIILPLT---GDRGKISKGLEDLKRVSPVGETYIHEGLKL 126
+ L + + +S + II LT G R + ++ +K TY +K
Sbjct: 78 YRCDRNLVWNAGALHYSDEVEIIQGLTRMPGGRDALKSSVDAVKYFGK--GTYTDCAIKK 135
Query: 127 ANEQIQKAGG-LKTSSIIIALTDG-KLDGLVPSYAEKEAKI--SRSLGASVYCVGV 178
EQ+ G LK + +I +TDG L+G E + ++ LG V+ V +
Sbjct: 136 GLEQLLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAKHLGVKVFSVAI 191
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 35.0 bits (79), Expect = 0.15
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 355 PPAPAPKEEEEEPLPTKKWPTVDASYYGG-RGVGGIK------RMEVRWGDKGSTEEGAR 407
PPAP P + + P WP D GG RGVG ++ + +RW +GS E+
Sbjct: 762 PPAPGPLKGGDVEAPRPVWP--DPKLEGGARGVGDVQETCLWAQTVLRWPSRGSGEDKLP 819
Query: 408 LEKAKNAVVKIPE-ETEEPIRPRPP 431
E+ K V + + EP+ P
Sbjct: 820 SERKKLKVEDLHSWKQPEPVSAETP 844
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,355,553
Number of Sequences: 37866
Number of extensions: 1112823
Number of successful extensions: 10705
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 9862
Number of HSP's gapped (non-prelim): 775
length of query: 488
length of database: 18,247,518
effective HSP length: 106
effective length of query: 382
effective length of database: 14,233,722
effective search space: 5437281804
effective search space used: 5437281804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.