Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SOAT1 Sequence: fasta or formatted (550aa) NCBI GI: 49533617
Description:

sterol O-acyltransferase 1

Referenced in:

Bile Acids and Other Cholesterol Derivatives

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         34           2
 C cysteine            1.6          9           1
 D aspartate           3.3         18           2
 E glutamate           5.1         28           2
 F phenylalanine      10.5         58           2
 G glycine             3.8         21           2
 H histidine           2.2         12           1
 I isoleucine          5.3         29           3
 K lysine              4.9         27           2
 L leucine            11.1         61           2
 M methionine          2.5         14           1
 N asparagine          4.2         23           2
 P proline             4.7         26           2
 Q glutamine           2.0         11           1
 R arginine            5.6         31           2
 S serine              6.9         38           2
 T threonine           4.2         23           2
 V valine              7.8         43           3
 W tryptophan          2.7         15           2
 Y tyrosine            5.3         29           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterol O-acyltransferase 1 
SOAT2                 0.432   acyl-CoA:cholesterol acyltransferase 2 
DGAT1                 0.088   diacylglycerol O-acyltransferase 1 
KIF3C                 0.008   kinesin family member 3C 
ACTN4                 0.007   actinin, alpha 4 
KIF17                 0.007   kinesin family member 17 isoform b 
KIF17                 0.007   kinesin family member 17 isoform a 
CETN2                 0.007   caltractin 
DUOXA2                0.006   dual oxidase activator 2 
KIF24                 0.006   kinesin family member 24 
KIF14                 0.006   kinesin family member 14 
ACTN1                 0.006   actinin, alpha 1 isoform c 
ACTN1                 0.006   actinin, alpha 1 isoform a 
ACTN1                 0.006   actinin, alpha 1 isoform b 
TRAM1                 0.006   translocation associated membrane protein 1 
C3orf63               0.005   retinoblastoma-associated protein 140 isoform a [Ho...
TRAM2                 0.005   translocation-associated membrane protein 2 
KIF3B                 0.005   kinesin family member 3B 
CALD1                 0.005   caldesmon 1 isoform 5 
CALD1                 0.005   caldesmon 1 isoform 2 
PIGB                  0.005   phosphatidylinositol glycan, class B 
SLC35B1               0.005   solute carrier family 35, member B1 
CDCA7L                0.005   cell division cycle associated 7-like isoform 3 [Ho...
CDCA7L                0.005   cell division cycle associated 7-like isoform 2 [Ho...
CDCA7L                0.005   cell division cycle associated 7-like isoform 1 [Hom...
GPX8                  0.004   glutathione peroxidase 8 
NOP14                 0.004   probable nucleolar complex protein 14 
TRPV3                 0.004   transient receptor potential cation channel, subfami...
SLC2A12               0.004   solute carrier family 2 (facilitated glucose transpo...
GPS1                  0.004   G protein pathway suppressor 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press