Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TRAM1 Sequence: fasta or formatted (374aa) NCBI GI: 7657655
Description:

translocation associated membrane protein 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         28           1
 C cysteine            0.8          3           1
 D aspartate           1.9          7           1
 E glutamate           4.3         16           2
 F phenylalanine       8.3         31           2
 G glycine             4.3         16           1
 H histidine           3.2         12           1
 I isoleucine          6.4         24           3
 K lysine              7.0         26           3
 L leucine            12.3         46           2
 M methionine          2.7         10           2
 N asparagine          4.5         17           1
 P proline             2.7         10           2
 Q glutamine           3.7         14           1
 R arginine            3.7         14           2
 S serine              7.2         27           2
 T threonine           5.6         21           1
 V valine              7.5         28           1
 W tryptophan          1.6          6           1
 Y tyrosine            4.8         18           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   translocation associated membrane protein 1 
TRAM1L1               0.712   translocation associated membrane protein 1-like 1 ...
TRAM2                 0.517   translocation-associated membrane protein 2 
LASS6                 0.044   longevity assurance homolog 6 
LASS4                 0.043   LAG1 homolog, ceramide synthase 4 
LASS2                 0.043   LAG1 longevity assurance 2 
LASS2                 0.043   LAG1 longevity assurance 2 
LASS5                 0.037   LAG1 homolog, ceramide synthase 5 
LASS3                 0.028   LAG1 longevity assurance homolog 3 
SOAT1                 0.010   sterol O-acyltransferase 1 
LOC644893             0.007   PREDICTED: hypothetical protein 
LOC644893             0.007   PREDICTED: hypothetical protein 
SLC6A17               0.007   solute carrier family 6, member 17 
NCR1                  0.007   natural cytotoxicity triggering receptor 1 isoform ...
NCR1                  0.006   natural cytotoxicity triggering receptor 1 isoform a ...
PKD2L1                0.006   polycystic kidney disease 2-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press