Guide to the Human Genome
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Name: TRPV3 Sequence: fasta or formatted (790aa) NCBI GI: 21735483
Description:

transient receptor potential cation channel, subfamily V, member 3

Referenced in:

Calcium and TRP Cation Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         55           2
 C cysteine            1.6         13           1
 D aspartate           4.6         36           2
 E glutamate           7.8         62           3
 F phenylalanine       5.9         47           2
 G glycine             4.1         32           1
 H histidine           2.2         17           1
 I isoleucine          5.9         47           1
 K lysine              6.1         48           2
 L leucine            12.4         98           3
 M methionine          3.3         26           1
 N asparagine          4.9         39           2
 P proline             4.4         35           2
 Q glutamine           2.9         23           2
 R arginine            5.3         42           3
 S serine              5.8         46           3
 T threonine           5.7         45           3
 V valine              5.7         45           1
 W tryptophan          1.4         11           1
 Y tyrosine            2.9         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transient receptor potential cation channel, subfami... 
TRPV1                 0.332   transient receptor potential cation channel, subfami...
TRPV1                 0.332   transient receptor potential cation channel, subfami...
TRPV1                 0.332   transient receptor potential cation channel, subfami...
TRPV1                 0.332   transient receptor potential cation channel, subfami...
TRPV4                 0.331   transient receptor potential cation channel, subfami...
TRPV2                 0.262   transient receptor potential cation channel, subfami...
TRPV4                 0.176   transient receptor potential cation channel, subfami...
TRPV6                 0.144   transient receptor potential cation channel, subfami...
TRPV5                 0.135   transient receptor potential cation channel, subfami...
TRPA1                 0.029   ankyrin-like protein 1 
TRPC4                 0.019   transient receptor potential cation channel, subfam...
TRPC4                 0.019   transient receptor potential cation channel, subfam...
TRPC4                 0.019   transient receptor potential cation channel, subfam...
TRPC4                 0.019   transient receptor potential cation channel, subfam...
TRPC4                 0.019   transient receptor potential cation channel, subfamil...
ASB3                  0.018   ankyrin repeat and SOCS box-containing protein 3 isof...
TRPM8                 0.017   transient receptor potential cation channel, subfam...
TRPM5                 0.017   transient receptor potential cation channel, subfami...
TRPC5                 0.016   transient receptor potential cation channel, subfamil...
TRPM2                 0.016   transient receptor potential cation channel, subfamil...
ASB3                  0.016   ankyrin repeat and SOCS box-containing protein 3 iso...
TRPC4                 0.015   transient receptor potential cation channel, subfam...
TRPM1                 0.015   transient receptor potential cation channel, subfami...
TRPC7                 0.015   transient receptor potential cation channel, subfamil...
ANK3                  0.014   ankyrin 3 isoform 1 
ANKRD27               0.014   ankyrin repeat domain 27 (VPS9 domain) 
MIB2                  0.014   mindbomb homolog 2 
TRPM6                 0.014   transient receptor potential cation channel, subfami...
TRPC6                 0.014   transient receptor potential cation channel, subfamil...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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