Search of human proteins with 4885197

Search of human proteins with 4885197

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4885197 ephrin A4 isoform a [Homo sapiens]
         (201 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4885197 ephrin A4 isoform a [Homo sapiens]                         424   e-119
gi|100913200 ephrin A4 isoform c [Homo sapiens]                       337   3e-93
gi|33359686 ephrin A4 isoform b [Homo sapiens]                        337   3e-93
gi|4503487 ephrin-A5 [Homo sapiens]                                   142   2e-34
gi|4826708 ephrin A3 [Homo sapiens]                                   141   4e-34
gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]              129   2e-30
gi|27894381 ephrin-A2 precursor [Homo sapiens]                        127   5e-30
gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]              111   5e-25
gi|4758250 ephrin B2 [Homo sapiens]                                    59   3e-09
gi|4503489 ephrin-B3 precursor [Homo sapiens]                          59   3e-09
gi|4758248 ephrin-B1 precursor [Homo sapiens]                          53   2e-07
gi|31543106 basal cell adhesion molecule isoform 1 precursor [Ho...    32   0.28 
gi|19923345 RNA binding motif protein 12 [Homo sapiens]                31   0.62 
gi|23510462 RNA binding motif protein 12 [Homo sapiens]                31   0.62 
gi|119964718 desmoglein 3 preproprotein [Homo sapiens]                 30   1.4  
gi|30425394 hypothetical protein LOC128876 [Homo sapiens]              30   1.4  
gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]          30   1.8  
gi|42476193 transmembrane protein 66 [Homo sapiens]                    30   1.8  
gi|22749199 fragile X mental retardation 1 neighbor [Homo sapiens]     29   2.4  
gi|32698950 hypothetical protein LOC283870 [Homo sapiens]              29   2.4  
gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens]       29   3.1  
gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens]       29   3.1  
gi|119395729 cathepsin A isoform a precursor [Homo sapiens]            28   4.0  
gi|79749430 FRAS1-related extracellular matrix protein 2 precurs...    28   4.0  
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         28   5.2  
gi|54607018 RYK receptor-like tyrosine kinase isoform 2 [Homo sa...    28   5.2  
gi|54607020 RYK receptor-like tyrosine kinase isoform 1 [Homo sa...    28   5.2  
gi|91208437 GEM interacting protein [Homo sapiens]                     28   5.2  
gi|40217829 G protein-coupled receptor 68 [Homo sapiens]               28   6.9  
gi|122937416 hypothetical protein LOC85452 [Homo sapiens]              27   9.0  

>gi|4885197 ephrin A4 isoform a [Homo sapiens]
          Length = 201

 Score =  424 bits (1091), Expect = e-119
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
           MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
Sbjct: 1   MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60

Query: 61  YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
           YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
Sbjct: 61  YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120

Query: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRGGDT 180
           GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRGGDT
Sbjct: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRGGDT 180

Query: 181 PSPLCLLLLLLLLILRLLRIL 201
           PSPLCLLLLLLLLILRLLRIL
Sbjct: 181 PSPLCLLLLLLLLILRLLRIL 201


>gi|100913200 ephrin A4 isoform c [Homo sapiens]
          Length = 193

 Score =  337 bits (865), Expect = 3e-93
 Identities = 159/163 (97%), Positives = 159/163 (97%), Gaps = 1/163 (0%)

Query: 1   MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
           MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
Sbjct: 1   MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60

Query: 61  YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
           YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
Sbjct: 61  YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120

Query: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHP 163
           GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKER   S HP
Sbjct: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLPS-HP 162


>gi|33359686 ephrin A4 isoform b [Homo sapiens]
          Length = 207

 Score =  337 bits (865), Expect = 3e-93
 Identities = 160/171 (93%), Positives = 162/171 (94%), Gaps = 2/171 (1%)

Query: 1   MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
           MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
Sbjct: 1   MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60

Query: 61  YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
           YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
Sbjct: 61  YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120

Query: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESG 171
           GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKER++       SPG  G
Sbjct: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVL--PRSPGGGG 169


>gi|4503487 ephrin-A5 [Homo sapiens]
          Length = 228

 Score =  142 bits (358), Expect = 2e-34
 Identities = 88/226 (38%), Positives = 118/226 (52%), Gaps = 27/226 (11%)

Query: 1   MRLLPLLRTVLW-AAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCP 59
           + +L L+  VLW   F   P     + R+ VYWNSSNPR  RGD  +++ +NDYLD+ CP
Sbjct: 4   VEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCP 63

Query: 60  HYEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---GHVQFSEKIQRFT 116
           HYE   P +  E + LYMV++ GY +C     + +KRW C+ P    G ++FSEK Q FT
Sbjct: 64  HYEDSVPEDKTERYVLYMVNFDGYSACD-HTSKGFKRWECNRPHSPNGPLKFSEKFQLFT 122

Query: 117 PFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSV-----CCK---------------E 155
           PFSLGFEF PG  Y+YIS   P++  + CL+L+V V     C K               E
Sbjct: 123 PFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCMKTIGVHDRVFDVNDKVE 182

Query: 156 RKSESAHPVGSPGESGTSGWRGGDTPS-PLCLLLLLLLLILRLLRI 200
              E A          + G     TP  P  LL +LL L+  LL +
Sbjct: 183 NSLEPADDTVHESAEPSRGENAAQTPRIPSRLLAILLFLLAMLLTL 228


>gi|4826708 ephrin A3 [Homo sapiens]
          Length = 238

 Score =  141 bits (355), Expect = 4e-34
 Identities = 77/173 (44%), Positives = 93/173 (53%), Gaps = 13/173 (7%)

Query: 3   LLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYE 62
           LL LL  V     L     G    RH VYWNSSN  L R    V++ +NDYLDI CPHY 
Sbjct: 8   LLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYN 67

Query: 63  --------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCS---LPFGHVQFSEK 111
                   GPGP  G E + LYMV   GY +C A   + +KRW C+    P   ++FSEK
Sbjct: 68  SSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHSPIKFSEK 125

Query: 112 IQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPV 164
            QR++ FSLG+EF  G  YYYIS PT     +CLR++V VCC         PV
Sbjct: 126 FQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPV 178


>gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
          Length = 205

 Score =  129 bits (323), Expect = 2e-30
 Identities = 68/156 (43%), Positives = 91/156 (58%), Gaps = 5/156 (3%)

Query: 11  LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
           LWA  LG      ++ RH V+WNSSNP+    D  + + LNDY+DI+CPHYE     +  
Sbjct: 4   LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63

Query: 71  -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
            E + LY+V+   Y+ CQ +  +   RW C+ P    G  + SEK QRFTPF+LG EF  
Sbjct: 64  MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122

Query: 127 GETYYYISVPTPESSGQCLRLQVSVCCKERKSESAH 162
           G +YYYIS P  +   +CLRL+V+V  K   S  AH
Sbjct: 123 GHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAH 158


>gi|27894381 ephrin-A2 precursor [Homo sapiens]
          Length = 213

 Score =  127 bits (320), Expect = 5e-30
 Identities = 76/162 (46%), Positives = 94/162 (58%), Gaps = 13/162 (8%)

Query: 24  SSLRHVVYWNSSNPRLLRGDA------VVELGLNDYLDIVCPHYEGPGPP-EGPETFALY 76
           +S R+ VYWN SNPR   G         VE+ +NDYLDI CPHY  P PP E  E + LY
Sbjct: 33  NSDRYAVYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVLY 92

Query: 77  MVDWPGYESCQAEGPRAYKRWVCSLPF---GHVQFSEKIQRFTPFSLGFEFLPGETYYYI 133
           MV+  G+ SC     R +KRW C+ P    G ++FSEK Q FTPFSLGFEF PG  YYYI
Sbjct: 93  MVNGEGHASCDHR-QRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYI 151

Query: 134 SVPTPESSGQ-CLRLQVSV-CCKERKSESAHPVGSPGESGTS 173
           S   P +  + CLRL+V V    E   E+  P+ +   S +S
Sbjct: 152 SATPPNAVDRPCLRLKVYVRPTNETLYEAPEPIFTSNNSCSS 193


>gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
          Length = 183

 Score =  111 bits (277), Expect = 5e-25
 Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 5/128 (3%)

Query: 11  LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
           LWA  LG      ++ RH V+WNSSNP+    D  + + LNDY+DI+CPHYE     +  
Sbjct: 4   LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63

Query: 71  -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
            E + LY+V+   Y+ CQ +  +   RW C+ P    G  + SEK QRFTPF+LG EF  
Sbjct: 64  MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122

Query: 127 GETYYYIS 134
           G +YYYIS
Sbjct: 123 GHSYYYIS 130


>gi|4758250 ephrin B2 [Homo sapiens]
          Length = 333

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 30  VYWNSSNPRLLRGDAVVELG-LNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQA 88
           +YWNSSN + L G  +V    + D LDI+CP  +     +  E + +YMVD    + C  
Sbjct: 33  IYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQY-EYYKVYMVDKDQADRCTI 91

Query: 89  EGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQ 148
           +         C+ P   ++F+ K Q F+P   G EF   + YY IS  T   S + L  Q
Sbjct: 92  KKENT-PLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYIIS--TSNGSLEGLDNQ 148

Query: 149 VSVCCKERKSESAHPVGSPGESGTS 173
               C+ R  +    VG    S  S
Sbjct: 149 EGGVCQTRAMKILMKVGQDASSAGS 173


>gi|4503489 ephrin-B3 precursor [Homo sapiens]
          Length = 340

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 30  VYWNSSNPRL-LRGDAVVELGLNDYLDIVCPHYEGPGPPEGP--ETFALYMVDWPGYESC 86
           VYWNS+N R    G  V+   + D LD++CP    PGP   P  E + LY+V       C
Sbjct: 33  VYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRC 92

Query: 87  QAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLR 146
           +A  P       C  P   ++F+ K Q ++P   G EF     YY I+       G    
Sbjct: 93  EAP-PAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREG-LES 150

Query: 147 LQVSVC 152
           LQ  VC
Sbjct: 151 LQGGVC 156


>gi|4758248 ephrin-B1 precursor [Homo sapiens]
          Length = 346

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 6   LLRTVLWAAF-LGSPLRGGSSLRHVVYWNSSNPRLLRGDA-VVELGLNDYLDIVCPHYEG 63
           L+  V+WA   L +PL   +     V W+S NP+ L G   V+   + D LDI+CP  E 
Sbjct: 13  LVAMVVWALCRLATPL---AKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEA 69

Query: 64  PGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGF 122
             P E    + LY+V      +C     P       C+ P   ++F+ K Q F+P  +G 
Sbjct: 70  GRPYE---YYKLYLVRPEQAAACSTVLDPNVLV--TCNRPEQEIRFTIKFQEFSPNYMGL 124

Query: 123 EFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVG 165
           EF     YY  S  T   S + L  +    C+ R  +    VG
Sbjct: 125 EFKKHHDYYITS--TSNGSLEGLENREGGVCRTRTMKIIMKVG 165


>gi|31543106 basal cell adhesion molecule isoform 1 precursor [Homo
           sapiens]
          Length = 628

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 18/106 (16%)

Query: 85  SCQAEGPRAYKRWVCSLPFGHVQFSEK--IQRFTPFSLGFEFLPGETYYYISVPTPESSG 142
           SC+A  P   KR V        Q S+          S+G   L    +Y           
Sbjct: 521 SCEASNPHGNKRHVFHFGTVSPQTSQAGVAVMAVAVSVGLLLLVVAVFY----------- 569

Query: 143 QCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRGGDTPSPLCLLL 188
            C+R +   CC++R+ + A P G PG S +    G + P    LL+
Sbjct: 570 -CVRRKGGPCCRQRREKGAPPPGEPGLSHS----GSEQPEQTGLLM 610


>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
          Length = 932

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 63  GPGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLG 121
           GPGP  GP    +++   PG+ S   + GP   K  V ++P     F+  I     F  G
Sbjct: 826 GPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIK--VQNMP-----FTVSIDEILDFFYG 878

Query: 122 FEFLPGET---YYYISVPTPES 140
           ++ +PG     Y    +PT E+
Sbjct: 879 YQVIPGSVCLKYNEKGMPTGEA 900


>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
          Length = 932

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 63  GPGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLG 121
           GPGP  GP    +++   PG+ S   + GP   K  V ++P     F+  I     F  G
Sbjct: 826 GPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIK--VQNMP-----FTVSIDEILDFFYG 878

Query: 122 FEFLPGET---YYYISVPTPES 140
           ++ +PG     Y    +PT E+
Sbjct: 879 YQVIPGSVCLKYNEKGMPTGEA 900


>gi|119964718 desmoglein 3 preproprotein [Homo sapiens]
          Length = 999

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 123 EFLPGETYYYISVPTPESSGQC-----LRLQVSVCCKERKSESAHPVGSPGESGTSGWRG 177
           E +P   Y+   V T   + +C     L L+V  C       +++P  SPG        G
Sbjct: 555 EQIPPGVYHISLVLTDSQNNRCEMPRSLTLEVCQCDNRGICGTSYPTTSPGTRYGRPHSG 614

Query: 178 GDTPSPLCLLLLLLLLIL 195
              P+ + LLLL LLL+L
Sbjct: 615 RLGPAAIGLLLLGLLLLL 632


>gi|30425394 hypothetical protein LOC128876 [Homo sapiens]
          Length = 747

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 10 VLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLR--------GDAVVELGLNDYLDIVCPHY 61
          VL A  +  PLRG      + +W  S+P +LR         DA++E G   YL ++    
Sbjct: 9  VLGAQGMAGPLRGRVEELKLPWWRESSPLVLRHSEAARLAADALLERGEAAYLRVISEER 68

Query: 62 EGP 64
          E P
Sbjct: 69 ELP 71


>gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]
          Length = 2322

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 14/56 (25%)

Query: 157  KSESAHPVGSPGESGTSGW----RGG----------DTPSPLCLLLLLLLLILRLL 198
            K ES+ P G PG   +S      +GG              P+CL+LLLL LIL LL
Sbjct: 2188 KPESSTPTGEPGPMASSPEPAVAKGGFLSFLEANMFSVIIPMCLVLLLLALILPLL 2243


>gi|42476193 transmembrane protein 66 [Homo sapiens]
          Length = 339

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 31  YWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQAEG 90
           Y +S +  +LRG   +E  L DY ++     +  G   G  +F+ Y   W   +SC   G
Sbjct: 117 YESSEDQYVLRGSCGLEYNL-DYTELGLQKLKESGKQHGFASFSDYYYKWSSADSCNMSG 175


>gi|22749199 fragile X mental retardation 1 neighbor [Homo sapiens]
          Length = 255

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 81  PGYESCQAEGP----RAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYIS-- 134
           PGYE+  A+ P    R   +   S PFG +  S  I  F  + L +    G +Y+ ++  
Sbjct: 43  PGYEAAMADRPQPGWRESLKMRVSKPFGMLMLSIWILLFVCYYLSYYLCSGSSYFVLANG 102

Query: 135 --VPTPESS-GQCL 145
             +P  E++ GQ L
Sbjct: 103 HILPNSENAHGQSL 116


>gi|32698950 hypothetical protein LOC283870 [Homo sapiens]
          Length = 228

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 147 LQVSVCCKERKSESAHPVGSPGESGTSGWRGGDTPSPLCLLLLLLLLILRLLRIL 201
           ++ + CC ER      P G   +    GWR       + LLLLLLLL+L  + I+
Sbjct: 1   MEPASCCAERPKPG--PTGVKTKPSCGGWRA------VGLLLLLLLLVLAAVGIV 47


>gi|157419140 laminin, gamma 2 isoform b precursor [Homo sapiens]
          Length = 1111

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/47 (27%), Positives = 17/47 (36%)

Query: 130 YYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWR 176
           YY +    PE   QC     S  C+     S H + S       GW+
Sbjct: 173 YYNLDGGNPEGCTQCFCYGHSASCRSSAEYSVHKITSTFHQDVDGWK 219


>gi|157419138 laminin, gamma 2 isoform a precursor [Homo sapiens]
          Length = 1193

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/47 (27%), Positives = 17/47 (36%)

Query: 130 YYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWR 176
           YY +    PE   QC     S  C+     S H + S       GW+
Sbjct: 173 YYNLDGGNPEGCTQCFCYGHSASCRSSAEYSVHKITSTFHQDVDGWK 219


>gi|119395729 cathepsin A isoform a precursor [Homo sapiens]
          Length = 498

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 9/41 (21%)

Query: 160 SAHPVGSPGESGTSGWRGGD-----TPSPLCLLLLLLLLIL 195
           ++ P   PGE G    RGG       P PL LLLLLLLL++
Sbjct: 2   TSSPRAPPGEQG----RGGAEMIRAAPPPLFLLLLLLLLLV 38


>gi|79749430 FRAS1-related extracellular matrix protein 2 precursor
           [Homo sapiens]
          Length = 3169

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 162 HPVGSPGESG-----TSGWRGGDTPSPLCLLLLLLLLIL 195
           H  G+PG S      ++ ++ G  P P  LLLLLLLL L
Sbjct: 2   HSAGTPGLSSRRTGNSTSFQPGPPPPPRLLLLLLLLLSL 40


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 63  GPGPPEGPETFALYMVDWPGYESCQAEGPRAY 94
           GPGPP GP + A   V  PG     A GPR +
Sbjct: 641 GPGPPPGPLSKAPQPVP-PGVGELPARGPRLF 671


>gi|54607018 RYK receptor-like tyrosine kinase isoform 2 [Homo
           sapiens]
          Length = 607

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/32 (53%), Positives = 18/32 (56%)

Query: 164 VGSPGESGTSGWRGGDTPSPLCLLLLLLLLIL 195
           +G PG S   G RG   P P  LLLLL LL L
Sbjct: 7   LGRPGRSCLPGARGLRAPPPPPLLLLLALLPL 38


>gi|54607020 RYK receptor-like tyrosine kinase isoform 1 [Homo
           sapiens]
          Length = 610

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/32 (53%), Positives = 18/32 (56%)

Query: 164 VGSPGESGTSGWRGGDTPSPLCLLLLLLLLIL 195
           +G PG S   G RG   P P  LLLLL LL L
Sbjct: 7   LGRPGRSCLPGARGLRAPPPPPLLLLLALLPL 38


>gi|91208437 GEM interacting protein [Homo sapiens]
          Length = 970

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 68  EGPETFALYMVDWPGYESCQAE-GPRAYKRWV-CSLPFGHVQ-FSEKIQRFTPFSLGFEF 124
           +G E      +   G    QAE GPRA+     C  PF   Q + E ++   P +     
Sbjct: 302 QGDEVLRRVTLSLFGLRGAQAERGPRAFAALAECCAPFEPGQRYQEFVRALRPEAPPPP- 360

Query: 125 LPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRGGDTPSP 183
            P    +   +P+  SS   +R ++S     R  E++   G P E   +GWR   TP P
Sbjct: 361 -PPAFSFQEFLPSLNSSPLDIRKKLSGPLPPRLDENSAEPG-PWEDPGTGWRWQGTPGP 417


>gi|40217829 G protein-coupled receptor 68 [Homo sapiens]
          Length = 375

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 142 GQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWRG 177
           G CL      C +  ++  A+P+G+P  SG SG +G
Sbjct: 312 GACLAFLT--CSRTGRAREAYPLGAPEASGKSGAQG 345


>gi|122937416 hypothetical protein LOC85452 [Homo sapiens]
          Length = 762

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 155 ERKSESAHPVGSPGESGTSGWRGGD 179
           +++ E   P G PG     GW GG+
Sbjct: 716 DKEQEEEQPAGEPGCQAKPGWAGGE 740


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.142    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,241,975
Number of Sequences: 37866
Number of extensions: 551030
Number of successful extensions: 2228
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2181
Number of HSP's gapped (non-prelim): 45
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.