Guide to the Human Genome
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Name: CTSA Sequence: fasta or formatted (498aa) NCBI GI: 119395729
Description:

cathepsin A isoform a precursor

Referenced in:

Carboxypeptidases
Galactose and Lactose
Lysosomes and Related Organelles
Serine Proteases

Other entries for this name:
alt prot [480aa] cathepsin A isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         30           2
 C cysteine            1.8          9           2
 D aspartate           4.8         24           2
 E glutamate           4.4         22           1
 F phenylalanine       4.8         24           2
 G glycine             7.4         37           2
 H histidine           1.8          9           1
 I isoleucine          2.6         13           1
 K lysine              4.2         21           1
 L leucine            12.7         63           9
 M methionine          2.6         13           1
 N asparagine          6.6         33           2
 P proline             6.2         31           3
 Q glutamine           5.4         27           1
 R arginine            4.2         21           2
 S serine              7.4         37           2
 T threonine           3.6         18           2
 V valine              5.8         29           3
 W tryptophan          1.8          9           1
 Y tyrosine            5.6         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cathepsin A isoform a precursor 
CTSA                  0.963   cathepsin A isoform b precursor 
CPVL                  0.161   serine carboxypeptidase vitellogenic-like 
CPVL                  0.161   serine carboxypeptidase vitellogenic-like 
SCPEP1                0.061   serine carboxypeptidase 1 precursor 
SLCO3A1               0.007   solute carrier organic anion transporter family, me...
SLCO3A1               0.007   solute carrier organic anion transporter family, me...
SLC9A7                0.007   solute carrier family 9, member 7 
RYK                   0.007   RYK receptor-like tyrosine kinase isoform 2 
RYK                   0.007   RYK receptor-like tyrosine kinase isoform 1 
SEMA5B                0.007   semaphorin 5B isoform 1 
FREM2                 0.006   FRAS1-related extracellular matrix protein 2 precurs...
LOC100292887          0.005   PREDICTED: hypothetical protein 
LOC100288650          0.005   PREDICTED: hypothetical protein XP_002343505 
TCP11                 0.005   t-complex 11 isoform 1 
TCP11                 0.005   t-complex 11 isoform 2 
ZNF516                0.005   zinc finger protein 516 
ACHE                  0.005   acetylcholinesterase isoform E4-E6 precursor 
ACHE                  0.005   acetylcholinesterase isoform E4-E5 precursor 
LOC100291692          0.004   PREDICTED: hypothetical protein XP_002345632 
LOC100291138          0.004   PREDICTED: hypothetical protein XP_002346502 
LOC100287287          0.004   PREDICTED: hypothetical protein XP_002342341 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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