Guide to the Human Genome
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Name: FREM2 Sequence: fasta or formatted (3169aa) NCBI GI: 79749430
Description:

FRAS1-related extracellular matrix protein 2 precursor

Referenced in:

Extracellular Matrix

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0        159           2
 C cysteine            0.9         29           1
 D aspartate           6.9        219           2
 E glutamate           6.8        215           4
 F phenylalanine       4.3        135           2
 G glycine             7.0        222           3
 H histidine           2.5         79           2
 I isoleucine          5.5        175           2
 K lysine              3.4        109           2
 L leucine             9.4        298           9
 M methionine          2.1         66           4
 N asparagine          3.3        104           2
 P proline             6.3        200           5
 Q glutamine           4.1        131           3
 R arginine            5.3        167           2
 S serine              7.8        247           4
 T threonine           7.2        227           2
 V valine              8.8        279           3
 W tryptophan          0.6         20           1
 Y tyrosine            2.8         88           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FRAS1-related extracellular matrix protein 2 precurs... 
FREM3                 0.374   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.374   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.374   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FRAS1                 0.200   Fraser syndrome 1 
FREM1                 0.149   FRAS1 related extracellular matrix 1 
CSPG4                 0.029   chondroitin sulfate proteoglycan 4 
LOC650794             0.012   PREDICTED: similar to FRAS1 related extracellular m...
LOC650794             0.012   PREDICTED: similar to FRAS1 related extracellular m...
LOC650794             0.012   PREDICTED: similar to FRAS1 related extracellular m...
GPR98                 0.008   G protein-coupled receptor 98 precursor 
SLC8A1                0.007   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A1                0.007   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A1                0.007   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A1                0.007   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A3                0.006   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.006   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.006   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.006   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A2                0.005   solute carrier family 8 member 2 
ITGB4                 0.003   integrin beta 4 isoform 2 precursor 
ITGB4                 0.003   integrin beta 4 isoform 1 precursor 
ITGB4                 0.003   integrin beta 4 isoform 3 precursor 
FAT3                  0.003   FAT tumor suppressor homolog 3 
LOC100291610          0.002   PREDICTED: similar to KIAA1920 protein 
PCDHB11               0.002   protocadherin beta 11 precursor 
ADAMTS8               0.002   ADAM metallopeptidase with thrombospondin type 1 mo...
METRNL                0.002   meteorin, glial cell differentiation regulator-like ...
GABBR2                0.002   G protein-coupled receptor 51 
PLBD1                 0.002   phospholipase B domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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