Guide to the Human Genome
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Name: FAM83C Sequence: fasta or formatted (747aa) NCBI GI: 30425394
Description:

hypothetical protein LOC128876

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         52           2
 C cysteine            1.2          9           1
 D aspartate           5.2         39           1
 E glutamate           6.0         45           2
 F phenylalanine       3.1         23           1
 G glycine             9.9         74           3
 H histidine           2.4         18           1
 I isoleucine          1.5         11           1
 K lysine              3.2         24           2
 L leucine            12.9         96           3
 M methionine          1.7         13           1
 N asparagine          2.0         15           1
 P proline             9.0         67           3
 Q glutamine           4.4         33           1
 R arginine            8.4         63           2
 S serine             10.6         79           3
 T threonine           4.1         31           2
 V valine              4.7         35           2
 W tryptophan          0.8          6           2
 Y tyrosine            1.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC128876 
FAM83A                0.152   hypothetical protein LOC84985 isoform a 
FAM83A                0.145   hypothetical protein LOC84985 isoform b 
FAM83B                0.115   hypothetical protein LOC222584 
FAM83H                0.110   FAM83H 
FAM83G                0.103   hypothetical protein LOC644815 
FAM83D                0.102   hypothetical protein LOC81610 
FAM83E                0.099   hypothetical protein LOC54854 
FAM83F                0.087   hypothetical protein LOC113828 
FLJ22184              0.013   PREDICTED: hypothetical protein LOC80164 
MLL2                  0.011   myeloid/lymphoid or mixed-lineage leukemia 2 
PLEKHA4               0.011   pleckstrin homology domain containing family A memb...
TCF12                 0.011   transcription factor 12 isoform b 
TCF12                 0.011   transcription factor 12 isoform b 
WIPF3                 0.011   WAS/WASL interacting protein family, member 3 [Homo...
FAM48B1               0.010   hypothetical protein LOC100130302 
PPRC1                 0.010   peroxisome proliferator-activated receptor gamma, co...
TCF12                 0.010   transcription factor 12 isoform a 
TCF12                 0.010   transcription factor 12 isoform a 
DTX2                  0.009   deltex 2 isoform b 
MAP3K11               0.009   mitogen-activated protein kinase kinase kinase 11 [Ho...
BAT2                  0.009   HLA-B associated transcript-2 
SYN1                  0.009   synapsin I isoform Ia 
TRIOBP                0.009   TRIO and F-actin binding protein isoform 6 
PRPF4B                0.009   serine/threonine-protein kinase PRP4K 
SRCAP                 0.009   Snf2-related CBP activator protein 
SYN1                  0.009   synapsin I isoform Ib 
KIAA1602              0.009   hypothetical protein LOC57701 
DOT1L                 0.008   DOT1-like, histone H3 methyltransferase 
NACA                  0.008   nascent polypeptide-associated complex alpha subuni...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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