Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMEM66 Sequence: fasta or formatted (339aa) NCBI GI: 42476193
Description:

transmembrane protein 66

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         20           3
 C cysteine            2.9         10           1
 D aspartate           5.0         17           1
 E glutamate           2.9         10           1
 F phenylalanine       4.4         15           1
 G glycine            13.3         45           2
 H histidine           1.8          6           1
 I isoleucine          2.1          7           1
 K lysine              4.1         14           1
 L leucine             8.8         30           3
 M methionine          0.9          3           1
 N asparagine          2.9         10           1
 P proline             6.8         23           4
 Q glutamine           3.5         12           2
 R arginine            4.1         14           3
 S serine             10.0         34           2
 T threonine           6.8         23           2
 V valine              3.5         12           2
 W tryptophan          2.1          7           1
 Y tyrosine            8.0         27           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 66 
ILF3                  0.018   interleukin enhancer binding factor 3 isoform e [Ho...
ILF3                  0.018   interleukin enhancer binding factor 3 isoform b [Hom...
LOC120364             0.017   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.017   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC100294395          0.017   PREDICTED: similar to serum response factor-related...
HNRNPA3               0.017   heterogeneous nuclear ribonucleoprotein A3 
HRNR                  0.016   hornerin 
ILF3                  0.016   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.016   interleukin enhancer binding factor 3 isoform a [Hom...
LOC120364             0.014   PREDICTED: similar to heterogeneous nuclear ribonuc...
DMKN                  0.014   dermokine isoform 4 precursor 
DMKN                  0.014   dermokine isoform 5 precursor 
DMKN                  0.014   dermokine isoform 3 precursor 
DMKN                  0.014   dermokine isoform 2 precursor 
FAM98A                0.014   hypothetical protein LOC25940 
ILF3                  0.014   interleukin enhancer binding factor 3 isoform c [Hom...
FUS                   0.011   fusion (involved in t(12;16) in malignant liposarcoma...
NUP54                 0.011   nucleoporin 54kDa 
NUP214                0.011   nucleoporin 214kDa 
HNRNPA1               0.011   heterogeneous nuclear ribonucleoprotein A1 isoform b...
ZMIZ1                 0.011   retinoic acid induced 17 
MUC3A                 0.010   PREDICTED: mucin 3A, cell surface associated, parti...
NUP98                 0.010   nucleoporin 98kD isoform 4 
NUP98                 0.010   nucleoporin 98kD isoform 3 
NUP98                 0.010   nucleoporin 98kD isoform 1 
NUP98                 0.010   nucleoporin 98kD isoform 2 
SF1                   0.010   splicing factor 1 isoform 1 
HNRNPA1               0.010   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
MUC3B                 0.010   PREDICTED: mucin 3B, cell surface associated, parti...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press