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Search of human proteins with 13375887
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13375887 zinc finger, matrin type 4 isoform a [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13375887 zinc finger, matrin type 4 isoform a [Homo sapiens] 475 e-134
gi|209180455 zinc finger, matrin type 4 isoform b [Homo sapiens] 243 1e-64
gi|6912440 zinc finger protein 346 [Homo sapiens] 172 2e-43
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 106 1e-23
gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens] 72 3e-13
gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens] 72 3e-13
gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens] 65 5e-11
gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens] 65 5e-11
gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens] 65 5e-11
gi|34101286 zinc finger RNA binding protein [Homo sapiens] 61 9e-10
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 57 1e-08
gi|13375981 zinc finger protein 385D [Homo sapiens] 55 7e-08
gi|195972903 zinc finger protein 385A isoform a [Homo sapiens] 50 2e-06
gi|24308079 zinc finger protein 385A isoform c [Homo sapiens] 50 2e-06
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens] 46 2e-05
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens] 46 2e-05
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens] 46 2e-05
gi|195972905 zinc finger protein 385A isoform b [Homo sapiens] 43 2e-04
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 40 0.001
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 40 0.001
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 40 0.001
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 37 0.011
gi|58533172 zinc finger, matrin type 1 isoform 3 [Homo sapiens] 37 0.014
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 35 0.053
gi|60498992 forkhead box P4 isoform 3 [Homo sapiens] 34 0.091
gi|60498989 forkhead box P4 isoform 1 [Homo sapiens] 34 0.091
gi|29789367 forkhead box P4 isoform 2 [Homo sapiens] 33 0.16
gi|41349474 PR domain containing 4 [Homo sapiens] 33 0.20
gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens] 33 0.26
gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo ... 33 0.26
>gi|13375887 zinc finger, matrin type 4 isoform a [Homo sapiens]
Length = 229
Score = 475 bits (1222), Expect = e-134
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRL 60
MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRL
Sbjct: 1 MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRL 60
Query: 61 RSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPL 120
RSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPL
Sbjct: 61 RSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPL 120
Query: 121 SPLKPPRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLE 180
SPLKPPRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLE
Sbjct: 121 SPLKPPRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLE 180
Query: 181 QLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
QLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK
Sbjct: 181 QLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
>gi|209180455 zinc finger, matrin type 4 isoform b [Homo sapiens]
Length = 153
Score = 243 bits (619), Expect = 1e-64
Identities = 126/172 (73%), Positives = 131/172 (76%), Gaps = 23/172 (13%)
Query: 1 MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRL 60
MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRL
Sbjct: 1 MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRL 60
Query: 61 RSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPL 120
RSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTT
Sbjct: 61 RSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTGL-- 118
Query: 121 SPLKPPRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKN 172
RR + C +C+ N+ H G KH+ N
Sbjct: 119 -------------------RR--NYRCTICSVSLNSIEQYHAHLKGSKHQTN 149
Score = 108 bits (270), Expect = 4e-24
Identities = 66/153 (43%), Positives = 84/153 (54%), Gaps = 15/153 (9%)
Query: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAPVVAS 136
C +C+ S +HY+ + HA +++L + P L+ A +V
Sbjct: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYY--MLHPRDGGCPAKRLRSENGSDADMV-- 71
Query: 137 PYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLGTTLDMGELRGLRR 196
D ++ C LC F + ++A HY GK H K R+ LL T L + GLRR
Sbjct: 72 -----DKNKCCTLCNMSFTSAVVADSHYQGKIHAK---RLKLLLGEKTPL---KTTGLRR 120
Query: 197 NYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
NYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK
Sbjct: 121 NYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 153
>gi|6912440 zinc finger protein 346 [Homo sapiens]
Length = 294
Score = 172 bits (436), Expect = 2e-43
Identities = 96/219 (43%), Positives = 129/219 (58%), Gaps = 22/219 (10%)
Query: 7 DQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDG-GCPAKRLRSENG 65
+Q LFT++ CKVC A LISESQ++AHY+S+KHA+KV+ Y +H + K+L S+
Sbjct: 66 NQCLFTNTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQK 125
Query: 66 SDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKP 125
S DKN+CC +CNM+F+S VVA SHY GK HAK LK LK +T + L
Sbjct: 126 SSRSK-DKNQCCPICNMTFSSPVVAQSHYLGKTHAKNLK--------LKQQSTKVEALHQ 176
Query: 126 PRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLGTT 185
R + D D++C LC A FN+P+MAQQHY GKKH+K ++ L+ + G
Sbjct: 177 NR-----------EMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRL 225
Query: 186 LDMGELR-GLRRNYRCTICSVSLNSIEQYHAHLKGSKHQ 223
D + Y C C + LNSIEQY AH+ G KH+
Sbjct: 226 ADPAVTDFPAGKGYPCKTCKIVLNSIEQYQAHVSGFKHK 264
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 147 CGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLGTTL--------DMGELRGLRRNY 198
C +C A + HY KKH R + + T D R +N
Sbjct: 75 CKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQ 134
Query: 199 RCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
C IC+++ +S +H G H NLK K
Sbjct: 135 CCPICNMTFSSPVVAQSHYLGKTHAKNLKLK 165
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 106 bits (265), Expect = 1e-23
Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 23/185 (12%)
Query: 9 DLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRS--ENGS 66
+LFTD +C+VC L ESQR++HYE KHA V Y+ +H P K+++ EN
Sbjct: 51 ELFTDKFCQVCGVMLQFESQRISHYEGEKHAQNVSFYFQMHGEQNEVPGKKMKMHVENFQ 110
Query: 67 --DADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLK 124
+ VDKNK C LCNM F+S ++A SHY GK+HAK+LK L+ E
Sbjct: 111 VHRYEGVDKNKFCDLCNMMFSSPLIAQSHYVGKVHAKKLKQLMEEHD------------- 157
Query: 125 PPRMDTAPVVASPYQRRDSDRY-CGLCAAWFNNPLMAQQHYDGKKHK-KNAARVALLEQL 182
+P P Y C +C+ F + M + H G +H+ K + + L++
Sbjct: 158 ----QASPSGFQPEMAFSMRTYVCHICSIAFTSLDMFRSHMQGSEHQIKESIVINLVKNS 213
Query: 183 GTTLD 187
T D
Sbjct: 214 RKTQD 218
Score = 77.8 bits (190), Expect = 7e-15
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 74 NKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLL---GEKTPLKTTATPLSPLKPPRMDT 130
+K C +C + SHY+G+ HA+ + GE+ + P K +M
Sbjct: 55 DKFCQVCGVMLQFESQRISHYEGEKHAQNVSFYFQMHGEQNEV--------PGKKMKMHV 106
Query: 131 APVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLGTTLDMG- 189
Y+ D +++C LC F++PL+AQ HY GK H K + L+E+ G
Sbjct: 107 ENFQVHRYEGVDKNKFCDLCNMMFSSPLIAQSHYVGKVHAKKLKQ--LMEEHDQASPSGF 164
Query: 190 --ELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQ 223
E+ R Y C ICS++ S++ + +H++GS+HQ
Sbjct: 165 QPEMAFSMRTYVCHICSIAFTSLDMFRSHMQGSEHQ 200
>gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens]
Length = 289
Score = 72.4 bits (176), Expect = 3e-13
Identities = 58/216 (26%), Positives = 83/216 (38%), Gaps = 53/216 (24%)
Query: 8 QDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRS----- 62
++L YCK+C+ L S Q AHY+ + H K+R YY + CP S
Sbjct: 64 EELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAAN----SCPPPARMSNVVEP 119
Query: 63 ---------------ENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLL- 106
+ G + +N C LC+ SF+S VA +HYQGK HAKRL+L
Sbjct: 120 AATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAE 179
Query: 107 -----------LGEKTPLKT-TATPLSPLKPPRMDTAPVVASPY------QRRDSDR--- 145
LG++ K + P + A PY QR D
Sbjct: 180 AQSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMC 239
Query: 146 -------YCGLCAAWFNNPLMAQQHYDGKKHKKNAA 174
YC +C + +QH + K+HK +
Sbjct: 240 VTPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVS 275
Score = 68.2 bits (165), Expect = 6e-12
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 18/145 (12%)
Query: 65 GSDADMVDKNKC----CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKT--------- 111
G + D + C C LCN++ SA A +HYQGK H K+L+ +
Sbjct: 56 GGEQDCALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSN 115
Query: 112 PLKTTATPLSPLKPPRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKK 171
++ ATP+ P+ PP+M + ++D YC LC A F++P +AQ HY GK H K
Sbjct: 116 VVEPAATPVVPV-PPQMGSFKPGGRVILATEND-YCKLCDASFSSPAVAQAHYQGKNHAK 173
Query: 172 NAARVALLEQLGTTLDMGELRGLRR 196
R+ L E + G RR
Sbjct: 174 ---RLRLAEAQSNSFSESSELGQRR 195
Score = 39.3 bits (90), Expect = 0.003
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 24/106 (22%)
Query: 146 YCGLCAAWFNNPLMAQQHYDGKKHKKNAAR------------------------VALLEQ 181
YC LC N+ AQ HY GK H K V + Q
Sbjct: 71 YCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPAATPVVPVPPQ 130
Query: 182 LGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLK 227
+G+ G + N C +C S +S AH +G H L+
Sbjct: 131 MGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLR 176
Score = 34.7 bits (78), Expect = 0.070
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 200 CTICSVSLNSIEQYHAHLKGSKHQTNLKN 228
C +C+V+LNS +Q AH +G H L+N
Sbjct: 72 CKLCNVTLNSAQQAQAHYQGKNHGKKLRN 100
>gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens]
Length = 288
Score = 72.4 bits (176), Expect = 3e-13
Identities = 58/215 (26%), Positives = 82/215 (38%), Gaps = 52/215 (24%)
Query: 8 QDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRS----- 62
++L YCK+C+ L S Q AHY+ + H K+R YY + CP S
Sbjct: 64 EELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAAN----SCPPPARMSNVVEP 119
Query: 63 ---------------ENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLL- 106
+ G + +N C LC+ SF+S VA +HYQGK HAKRL+L
Sbjct: 120 AATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAE 179
Query: 107 -----------LGEKTPLKTTATPLSPLKPPRMDTAPVVASPY------QRRDSDR---- 145
LG++ K M T + PY QR D
Sbjct: 180 AQSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSGPYFNPRSRQRIPRDLAMCV 239
Query: 146 ------YCGLCAAWFNNPLMAQQHYDGKKHKKNAA 174
YC +C + +QH + K+HK +
Sbjct: 240 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVS 274
Score = 68.2 bits (165), Expect = 6e-12
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 18/145 (12%)
Query: 65 GSDADMVDKNKC----CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKT--------- 111
G + D + C C LCN++ SA A +HYQGK H K+L+ +
Sbjct: 56 GGEQDCALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSN 115
Query: 112 PLKTTATPLSPLKPPRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKK 171
++ ATP+ P+ PP+M + ++D YC LC A F++P +AQ HY GK H K
Sbjct: 116 VVEPAATPVVPV-PPQMGSFKPGGRVILATEND-YCKLCDASFSSPAVAQAHYQGKNHAK 173
Query: 172 NAARVALLEQLGTTLDMGELRGLRR 196
R+ L E + G RR
Sbjct: 174 ---RLRLAEAQSNSFSESSELGQRR 195
Score = 39.3 bits (90), Expect = 0.003
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 24/106 (22%)
Query: 146 YCGLCAAWFNNPLMAQQHYDGKKHKKNAAR------------------------VALLEQ 181
YC LC N+ AQ HY GK H K V + Q
Sbjct: 71 YCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPAATPVVPVPPQ 130
Query: 182 LGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLK 227
+G+ G + N C +C S +S AH +G H L+
Sbjct: 131 MGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLR 176
Score = 34.7 bits (78), Expect = 0.070
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 200 CTICSVSLNSIEQYHAHLKGSKHQTNLKN 228
C +C+V+LNS +Q AH +G H L+N
Sbjct: 72 CKLCNVTLNSAQQAQAHYQGKNHGKKLRN 100
>gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens]
Length = 369
Score = 65.1 bits (157), Expect = 5e-11
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 31/233 (13%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKNK 75
C VC + S+SQ AHY+ KHA KV+ + P+K D N
Sbjct: 57 CNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSK----------DSAKANP 106
Query: 76 CCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTP---LKTTATPL------SPLKPP 126
C++ ++ ++ S +GK+ A ++ LK+ TPL SP K
Sbjct: 107 SCSITPITGNNS--DKSEDKGKLKASSSSQPSSSESGSFLLKSGTTPLPPGAATSPSKST 164
Query: 127 RMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHK------KNAARVALLE 180
VV S ++ YC LC N+ + H G KHK A +
Sbjct: 165 NGAPGTVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYP 224
Query: 181 QLGTTLDM---GELRGLR-RNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
+ G+ L M + GL+ + + C IC V +NS Q H+ +H+ + K
Sbjct: 225 RPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGK 277
Score = 44.7 bits (104), Expect = 7e-05
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAK-------RLRSENGS- 66
YC +C + S SQ AH KH + M+ R+G P K RL+ +NGS
Sbjct: 184 YCSLCKVAVNSLSQLEAHNTGSKHKT------MVEARNGAGPIKSYPRPGSRLKMQNGSK 237
Query: 67 DADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPP 126
+ + +K C +C++ S + H + H R+ PLK +P +
Sbjct: 238 GSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRV-----AGKPLKPKYSPYN----- 287
Query: 127 RMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMA 160
++ +P + + D L A+ ++PL A
Sbjct: 288 KLQRSPSILAAKLAFQKDMMKPLAPAFLSSPLAA 321
>gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens]
Length = 395
Score = 65.1 bits (157), Expect = 5e-11
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 31/233 (13%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKNK 75
C VC + S+SQ AHY+ KHA KV+ + P+K D N
Sbjct: 83 CNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSK----------DSAKANP 132
Query: 76 CCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTP---LKTTATPL------SPLKPP 126
C++ ++ ++ S +GK+ A ++ LK+ TPL SP K
Sbjct: 133 SCSITPITGNNS--DKSEDKGKLKASSSSQPSSSESGSFLLKSGTTPLPPGAATSPSKST 190
Query: 127 RMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHK------KNAARVALLE 180
VV S ++ YC LC N+ + H G KHK A +
Sbjct: 191 NGAPGTVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYP 250
Query: 181 QLGTTLDM---GELRGLR-RNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
+ G+ L M + GL+ + + C IC V +NS Q H+ +H+ + K
Sbjct: 251 RPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGK 303
Score = 44.7 bits (104), Expect = 7e-05
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAK-------RLRSENGS- 66
YC +C + S SQ AH KH + M+ R+G P K RL+ +NGS
Sbjct: 210 YCSLCKVAVNSLSQLEAHNTGSKHKT------MVEARNGAGPIKSYPRPGSRLKMQNGSK 263
Query: 67 DADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPP 126
+ + +K C +C++ S + H + H R+ PLK +P +
Sbjct: 264 GSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRV-----AGKPLKPKYSPYN----- 313
Query: 127 RMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMA 160
++ +P + + D L A+ ++PL A
Sbjct: 314 KLQRSPSILAAKLAFQKDMMKPLAPAFLSSPLAA 347
>gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens]
Length = 471
Score = 65.1 bits (157), Expect = 5e-11
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 31/233 (13%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKNK 75
C VC + S+SQ AHY+ KHA KV+ + P+K D N
Sbjct: 159 CNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSK----------DSAKANP 208
Query: 76 CCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTP---LKTTATPL------SPLKPP 126
C++ ++ ++ S +GK+ A ++ LK+ TPL SP K
Sbjct: 209 SCSITPITGNNS--DKSEDKGKLKASSSSQPSSSESGSFLLKSGTTPLPPGAATSPSKST 266
Query: 127 RMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHK------KNAARVALLE 180
VV S ++ YC LC N+ + H G KHK A +
Sbjct: 267 NGAPGTVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYP 326
Query: 181 QLGTTLDM---GELRGLR-RNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
+ G+ L M + GL+ + + C IC V +NS Q H+ +H+ + K
Sbjct: 327 RPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGK 379
Score = 47.0 bits (110), Expect = 1e-05
Identities = 48/199 (24%), Positives = 72/199 (36%), Gaps = 46/199 (23%)
Query: 54 GCPAKRLRSENGSDADMVDKNKC----CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGE 109
G K ++++ D +K K C +CN+ SA A H GK H KR+K L
Sbjct: 9 GFEEKGIKNDRPEDQLSKEKKKILFSFCEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDG 68
Query: 110 KTPLKTTATPLSP---------------------LKPPRMDTAPVVASPYQRRDSDRYCG 148
+ P A+P S + P +D P ++ P DS G
Sbjct: 69 QPPPPAQASPSSNSSTGSTCHTTTLPALVRTPTLMMQPSLDIKPFMSFPV---DSSSAVG 125
Query: 149 LCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLGTTLDMGELRGLRRNYRCTICSVSLN 208
L FN Q + + G ++ + ++ C +C + N
Sbjct: 126 LFPN-FNTMDPVQ-------------KAVINHTFGVSIPPKK----KQVISCNVCQLRFN 167
Query: 209 SIEQYHAHLKGSKHQTNLK 227
S Q AH KGSKH +K
Sbjct: 168 SDSQAEAHYKGSKHAKKVK 186
Score = 44.7 bits (104), Expect = 7e-05
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAK-------RLRSENGS- 66
YC +C + S SQ AH KH + M+ R+G P K RL+ +NGS
Sbjct: 286 YCSLCKVAVNSLSQLEAHNTGSKHKT------MVEARNGAGPIKSYPRPGSRLKMQNGSK 339
Query: 67 DADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPP 126
+ + +K C +C++ S + H + H R+ PLK +P +
Sbjct: 340 GSGLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRV-----AGKPLKPKYSPYN----- 389
Query: 127 RMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMA 160
++ +P + + D L A+ ++PL A
Sbjct: 390 KLQRSPSILAAKLAFQKDMMKPLAPAFLSSPLAA 423
Score = 35.8 bits (81), Expect = 0.031
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 18/163 (11%)
Query: 14 SYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDK 73
S+C+VC+ QL S +Q H + H +V+ L PA+ S N S
Sbjct: 34 SFCEVCNIQLNSAAQAQVHSNGKSHRKRVK---QLSDGQPPPPAQASPSSNSSTG----- 85
Query: 74 NKCCTLCNMSFTSAVVADS--HYQGKIHAKRLKLLLGEKTP---LKTTATPLSPLKPPRM 128
+ C+ + A+V Q + K + + L + P++ +
Sbjct: 86 ----STCHTTTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVI 141
Query: 129 DTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKK 171
+ V+ P +++ C +C FN+ A+ HY G KH K
Sbjct: 142 NHTFGVSIPPKKKQVIS-CNVCQLRFNSDSQAEAHYKGSKHAK 183
>gi|34101286 zinc finger RNA binding protein [Homo sapiens]
Length = 1074
Score = 60.8 bits (146), Expect = 9e-10
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 119 PLSPLKPPRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVAL 178
P P KPP++ YC +C P ++H +G+KHKK A AL
Sbjct: 321 PKQPPKPPQI----------------HYCDVCKISCAGPQTYKEHLEGQKHKKKEA--AL 362
Query: 179 LEQLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLK 227
T+ RG + RC +C VS + Y AH++G+KHQ +K
Sbjct: 363 KASQNTSSSNSSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVK 411
Score = 38.5 bits (88), Expect = 0.005
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 20/121 (16%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKN 74
YC VC H E +KH K + A + S + S
Sbjct: 332 YCDVCKISCAGPQTYKEHLEGQKHKKK----------EAALKASQNTSSSNSSTRGTQNQ 381
Query: 75 KCCTLCNMSFTSAVVADSHYQGKIHAKRLKL--LLGEKTP--------LKTTATPLSPLK 124
C LC++S T A +H +G H K +KL LG+ P T++T +S K
Sbjct: 382 LRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASK 441
Query: 125 P 125
P
Sbjct: 442 P 442
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 198 YRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
+ C +C S N HLKG +H+ K K
Sbjct: 582 FHCKLCECSFNDPNAKEMHLKGRRHRLQYKKK 613
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 115 TTATPLSP--LKPPRMDTAPVVASPYQRRDSDR------YCGLCAAWFNNPLMAQQHYDG 166
T + P++P L + D PV + +D +C LC FN+P + H G
Sbjct: 544 TVSEPVTPASLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKG 603
Query: 167 KKHK 170
++H+
Sbjct: 604 RRHR 607
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 57.0 bits (136), Expect = 1e-08
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 108 GEKTPLKTTATPLSPLKPPRMDTAPVVASPYQRRDSD------RYCGLCAAWFNNPLMAQ 161
G L P PR D+ P + S R + YC +C P +
Sbjct: 228 GPPQQLPPPPAPAGSGSSPRADSKPPLPSKLPRPKAGPRQLQLHYCDICKISCAGPQTYR 287
Query: 162 QHYDGKKHKKNAARVALLEQLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSK 221
+H G+KH+K A Q G RG++ C +C+VS + Y AH++GSK
Sbjct: 288 EHLGGQKHRKKEAA-----QKTGVQPNGSPRGVQAQLHCDLCAVSCTGADAYAAHIRGSK 342
Query: 222 HQTNLK 227
HQ K
Sbjct: 343 HQKVFK 348
Score = 39.7 bits (91), Expect = 0.002
Identities = 50/241 (20%), Positives = 77/241 (31%), Gaps = 39/241 (16%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKN 74
YC +C H +KH K + G P NGS V
Sbjct: 272 YCDICKISCAGPQTYREHLGGQKHRKKEAAQ-----KTGVQP-------NGSPRG-VQAQ 318
Query: 75 KCCTLCNMSFTSAVVADSHYQGKIHAKRLKL-------------LLGEKTPLKTTATPLS 121
C LC +S T A +H +G H K KL L ++P A P S
Sbjct: 319 LHCDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKLGKPIPTLEPALATESPPGAEAKPTS 378
Query: 122 PLKP-------PRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKK----HK 170
P P P + PV + + C + P + G K
Sbjct: 379 PTGPSVCASSRPALAKRPVASKALCEGPPEPQAAGCRPQWGKPAQPKLEGPGAPTQGGSK 438
Query: 171 KNAARVALLEQLGTTL--DMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKN 228
+ A + + +G ++ G + C +C S N + H++G +H+ +
Sbjct: 439 EAPAGCSDAQPVGPEYVEEVFSDEGRVLRFHCKLCECSFNDLNAKDLHVRGRRHRLQYRK 498
Query: 229 K 229
K
Sbjct: 499 K 499
>gi|13375981 zinc finger protein 385D [Homo sapiens]
Length = 395
Score = 54.7 bits (130), Expect = 7e-08
Identities = 51/233 (21%), Positives = 84/233 (36%), Gaps = 35/233 (15%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSEN---------GS 66
C +C + S+SQ AHY+ KHA K++ + + AK +
Sbjct: 82 CNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTAKDSAKTTFTSITTNTINT 141
Query: 67 DADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPP 126
+D D + + T + S +I +K EK+P TTAT S
Sbjct: 142 SSDKTDGTAGTPAISTTTTVEIRKSSVMTTEITSK------VEKSP--TTATGNS----- 188
Query: 127 RMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHK------KNAARVALLE 180
+ P + ++ YC LC N+ + H G KHK + +
Sbjct: 189 ---SCPSTETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGTIKAFP 245
Query: 181 QLGT----TLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
+ G ++ G + + C IC V +NS Q H+ +H+ K
Sbjct: 246 RAGVKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGK 298
Score = 33.5 bits (75), Expect = 0.16
Identities = 36/145 (24%), Positives = 51/145 (35%), Gaps = 29/145 (20%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSE--------NGS 66
YC +C + S SQ AH KH + ML R+G K N
Sbjct: 205 YCSLCKVAVNSASQLEAHNSGTKHKT------MLEARNGSGTIKAFPRAGVKGKGPVNKG 258
Query: 67 DADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRL-----KLLLGEKTPLKTTATPL- 120
+ + +K C +C++ S H + H R K L+ TA PL
Sbjct: 259 NTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGKPPKPKYSPYNKLQKTAHPLG 318
Query: 121 -------SPLKP--PRMDTAPVVAS 136
P KP PR+ P+ A+
Sbjct: 319 VKLVFSKEPSKPLAPRILPNPLAAA 343
Score = 30.0 bits (66), Expect = 1.7
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 22/101 (21%)
Query: 93 HYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAPVV--------ASPYQ----- 139
++ G + L L+ P + + P P +DTA V P Q
Sbjct: 6 YFGGTCQSPALPALVRPPAPPLQPSLDIKPFLPFPLDTAAAVNLFPNFNAMDPIQKAVIN 65
Query: 140 ---------RRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKK 171
RR C +C FN+ A HY G KH K
Sbjct: 66 HTFGVPLPHRRKQIISCNICQLRFNSDSQAAAHYKGTKHAK 106
>gi|195972903 zinc finger protein 385A isoform a [Homo sapiens]
Length = 386
Score = 49.7 bits (117), Expect = 2e-06
Identities = 49/217 (22%), Positives = 75/217 (34%), Gaps = 64/217 (29%)
Query: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKT--------------PLKTTAT---- 118
C +C + F S A++HY+G HA+R+K + KT P +T T
Sbjct: 76 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG 135
Query: 119 ---------------PLSPLKPPRMDTAPVVASPYQ-------------------RRDSD 144
P SP K P + P + Q + + +
Sbjct: 136 VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEE 195
Query: 145 R-----YCGLCAAWFNNPLMAQQHYDGKKHK------KNAARVALLEQLGT-TLDMGELR 192
+ YC LC N+ + H G KHK + +LG T E
Sbjct: 196 KAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAP 255
Query: 193 GLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
R + C IC+V +NS Q H+ +H+ + K
Sbjct: 256 AQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGK 292
Score = 36.2 bits (82), Expect = 0.024
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 52 DGGCPAKRLRSENGSDADMVDKNK---CCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLG 108
+GG PA S G + +K K C LC ++ S ++H +G H L+ G
Sbjct: 177 EGGTPAPA--SLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSG 234
Query: 109 EKTPLKTTATPLSPLKP-PRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGK 167
L P+K PR+ +D +C +C N+ + +QH +
Sbjct: 235 -----------LGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSR 283
Query: 168 KHKKNAARV--ALLEQLGTTLDMGELRG 193
+H+ A LL + + GEL G
Sbjct: 284 RHRDGVAGKPNPLLSRHKKSRGAGELAG 311
Score = 33.9 bits (76), Expect = 0.12
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRL-----RSENGSDAD 69
YC +C + S SQ AH + KH + +L R G P K + +A
Sbjct: 202 YCALCKVAVNSLSQLEAHNKGTKHKT------ILEARSGLGPIKAYPRLGPPTPGEPEAP 255
Query: 70 MVDKNKCCTLCNMSFTSAVVADSHYQGKIH 99
D+ C +CN+ S V H + H
Sbjct: 256 AQDRTFHCEICNVKVNSEVQLKQHISSRRH 285
Score = 32.0 bits (71), Expect = 0.45
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVR 43
C +C + S+SQ AHY+ +HA +V+
Sbjct: 76 CNICQIRFNSQSQAEAHYKGNRHARRVK 103
>gi|24308079 zinc finger protein 385A isoform c [Homo sapiens]
Length = 366
Score = 49.7 bits (117), Expect = 2e-06
Identities = 49/217 (22%), Positives = 75/217 (34%), Gaps = 64/217 (29%)
Query: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKT--------------PLKTTAT---- 118
C +C + F S A++HY+G HA+R+K + KT P +T T
Sbjct: 56 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDG 115
Query: 119 ---------------PLSPLKPPRMDTAPVVASPYQ-------------------RRDSD 144
P SP K P + P + Q + + +
Sbjct: 116 VAPRPVSMENGLGPAPGSPEKQPGSPSPPSIPETGQGVTKGEGGTPAPASLPGGSKEEEE 175
Query: 145 R-----YCGLCAAWFNNPLMAQQHYDGKKHK------KNAARVALLEQLGT-TLDMGELR 192
+ YC LC N+ + H G KHK + +LG T E
Sbjct: 176 KAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAP 235
Query: 193 GLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
R + C IC+V +NS Q H+ +H+ + K
Sbjct: 236 AQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGK 272
Score = 36.2 bits (82), Expect = 0.024
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 52 DGGCPAKRLRSENGSDADMVDKNK---CCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLG 108
+GG PA S G + +K K C LC ++ S ++H +G H L+ G
Sbjct: 157 EGGTPAPA--SLPGGSKEEEEKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSG 214
Query: 109 EKTPLKTTATPLSPLKP-PRMDTAPVVASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGK 167
L P+K PR+ +D +C +C N+ + +QH +
Sbjct: 215 -----------LGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSR 263
Query: 168 KHKKNAARV--ALLEQLGTTLDMGELRG 193
+H+ A LL + + GEL G
Sbjct: 264 RHRDGVAGKPNPLLSRHKKSRGAGELAG 291
Score = 33.9 bits (76), Expect = 0.12
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRL-----RSENGSDAD 69
YC +C + S SQ AH + KH + +L R G P K + +A
Sbjct: 182 YCALCKVAVNSLSQLEAHNKGTKHKT------ILEARSGLGPIKAYPRLGPPTPGEPEAP 235
Query: 70 MVDKNKCCTLCNMSFTSAVVADSHYQGKIH 99
D+ C +CN+ S V H + H
Sbjct: 236 AQDRTFHCEICNVKVNSEVQLKQHISSRRH 265
Score = 32.0 bits (71), Expect = 0.45
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVR 43
C +C + S+SQ AHY+ +HA +V+
Sbjct: 56 CNICQIRFNSQSQAEAHYKGNRHARRVK 83
>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 46.2 bits (108), Expect = 2e-05
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEK---------------TPLKTTATPLS 121
C +C++ F SA A++HY+G HA++LK + K +P+ T A+
Sbjct: 739 CNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSPIPTLASGAP 798
Query: 122 PLKPPRMDTAPVVASPYQRRDS-DRYC------GLCAAWFNNPLMAQQHYDGKKHKKNAA 174
++ AP + P Q + D C L A ++ + + ++
Sbjct: 799 GEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCSPEPGREAPG 858
Query: 175 RVALLEQLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQ 223
+G+++ GE R + + C C V++NS Q AH G+KH+
Sbjct: 859 PEPAAAAVGSSMS-GEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHR 906
Score = 43.1 bits (100), Expect = 2e-04
Identities = 52/246 (21%), Positives = 83/246 (33%), Gaps = 35/246 (14%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPR--------DGGCPAKRLRSENGSD 67
C +C + S +Q AHY+ KHA K++ + DG + +G+
Sbjct: 739 CNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSPIPTLASGAP 798
Query: 68 ADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSP----- 122
+ K D + H++ LL + ++ P SP
Sbjct: 799 GEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSE---LLDAASSSSSSSCPPCSPEPGRE 855
Query: 123 LKPPRMDTAPVVASPYQRRDSDR---YCGLCAAWFNNPLMAQQHYDGKKHK--KNAARVA 177
P A V +S S++ YC C N+ Q H G KH+ R A
Sbjct: 856 APGPEPAAAAVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHRWMMEGQRGA 915
Query: 178 LLEQLGTTLDMGEL----------RGLRRN----YRCTICSVSLNSIEQYHAHLKGSKHQ 223
G + G RG R+ + C +C + +NS Q H+ +H+
Sbjct: 916 PRRSRGRPVSRGGAGHKAKRVTGGRGGRQGPSPAFHCALCQLQVNSETQLKQHMSSRRHK 975
Query: 224 TNLKNK 229
L K
Sbjct: 976 DRLAGK 981
Score = 27.7 bits (60), Expect = 8.5
Identities = 25/99 (25%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKN 74
YC C + S SQ AH KH + R G P R G A V
Sbjct: 882 YCPTCKVTVNSASQLQAHNTGAKHRWMMEGQRGAPRRSRGRPVS--RGGAGHKAKRVTGG 939
Query: 75 K----------CCTLCNMSFTSAVVADSHYQGKIHAKRL 103
+ C LC + S H + H RL
Sbjct: 940 RGGRQGPSPAFHCALCQLQVNSETQLKQHMSSRRHKDRL 978
>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 46.2 bits (108), Expect = 2e-05
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEK---------------TPLKTTATPLS 121
C +C++ F SA A++HY+G HA++LK + K +P+ T A+
Sbjct: 739 CNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSPIPTLASGAP 798
Query: 122 PLKPPRMDTAPVVASPYQRRDS-DRYC------GLCAAWFNNPLMAQQHYDGKKHKKNAA 174
++ AP + P Q + D C L A ++ + + ++
Sbjct: 799 GEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCSPEPGREAPG 858
Query: 175 RVALLEQLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQ 223
+G+++ GE R + + C C V++NS Q AH G+KH+
Sbjct: 859 PEPAAAAVGSSMS-GEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHR 906
Score = 43.1 bits (100), Expect = 2e-04
Identities = 52/246 (21%), Positives = 83/246 (33%), Gaps = 35/246 (14%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPR--------DGGCPAKRLRSENGSD 67
C +C + S +Q AHY+ KHA K++ + DG + +G+
Sbjct: 739 CNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSPIPTLASGAP 798
Query: 68 ADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSP----- 122
+ K D + H++ LL + ++ P SP
Sbjct: 799 GEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSE---LLDAASSSSSSSCPPCSPEPGRE 855
Query: 123 LKPPRMDTAPVVASPYQRRDSDR---YCGLCAAWFNNPLMAQQHYDGKKHK--KNAARVA 177
P A V +S S++ YC C N+ Q H G KH+ R A
Sbjct: 856 APGPEPAAAAVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHRWMMEGQRGA 915
Query: 178 LLEQLGTTLDMGEL----------RGLRRN----YRCTICSVSLNSIEQYHAHLKGSKHQ 223
G + G RG R+ + C +C + +NS Q H+ +H+
Sbjct: 916 PRRSRGRPVSRGGAGHKAKRVTGGRGGRQGPSPAFHCALCQLQVNSETQLKQHMSSRRHK 975
Query: 224 TNLKNK 229
L K
Sbjct: 976 DRLAGK 981
Score = 27.7 bits (60), Expect = 8.5
Identities = 25/99 (25%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKN 74
YC C + S SQ AH KH + R G P R G A V
Sbjct: 882 YCPTCKVTVNSASQLQAHNTGAKHRWMMEGQRGAPRRSRGRPVS--RGGAGHKAKRVTGG 939
Query: 75 K----------CCTLCNMSFTSAVVADSHYQGKIHAKRL 103
+ C LC + S H + H RL
Sbjct: 940 RGGRQGPSPAFHCALCQLQVNSETQLKQHMSSRRHKDRL 978
>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 46.2 bits (108), Expect = 2e-05
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEK---------------TPLKTTATPLS 121
C +C++ F SA A++HY+G HA++LK + K +P+ T A+
Sbjct: 739 CNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSPIPTLASGAP 798
Query: 122 PLKPPRMDTAPVVASPYQRRDS-DRYC------GLCAAWFNNPLMAQQHYDGKKHKKNAA 174
++ AP + P Q + D C L A ++ + + ++
Sbjct: 799 GEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCSPEPGREAPG 858
Query: 175 RVALLEQLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQ 223
+G+++ GE R + + C C V++NS Q AH G+KH+
Sbjct: 859 PEPAAAAVGSSMS-GEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHR 906
Score = 43.1 bits (100), Expect = 2e-04
Identities = 52/246 (21%), Positives = 83/246 (33%), Gaps = 35/246 (14%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPR--------DGGCPAKRLRSENGSD 67
C +C + S +Q AHY+ KHA K++ + DG + +G+
Sbjct: 739 CNICHLRFNSANQAEAHYKGHKHARKLKAVEAAKSKQRPHTQAQDGAVVSPIPTLASGAP 798
Query: 68 ADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSP----- 122
+ K D + H++ LL + ++ P SP
Sbjct: 799 GEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSE---LLDAASSSSSSSCPPCSPEPGRE 855
Query: 123 LKPPRMDTAPVVASPYQRRDSDR---YCGLCAAWFNNPLMAQQHYDGKKHK--KNAARVA 177
P A V +S S++ YC C N+ Q H G KH+ R A
Sbjct: 856 APGPEPAAAAVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHRWMMEGQRGA 915
Query: 178 LLEQLGTTLDMGEL----------RGLRRN----YRCTICSVSLNSIEQYHAHLKGSKHQ 223
G + G RG R+ + C +C + +NS Q H+ +H+
Sbjct: 916 PRRSRGRPVSRGGAGHKAKRVTGGRGGRQGPSPAFHCALCQLQVNSETQLKQHMSSRRHK 975
Query: 224 TNLKNK 229
L K
Sbjct: 976 DRLAGK 981
Score = 27.7 bits (60), Expect = 8.5
Identities = 25/99 (25%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 15 YCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKN 74
YC C + S SQ AH KH + R G P R G A V
Sbjct: 882 YCPTCKVTVNSASQLQAHNTGAKHRWMMEGQRGAPRRSRGRPVS--RGGAGHKAKRVTGG 939
Query: 75 K----------CCTLCNMSFTSAVVADSHYQGKIHAKRL 103
+ C LC + S H + H RL
Sbjct: 940 RGGRQGPSPAFHCALCQLQVNSETQLKQHMSSRRHKDRL 978
>gi|195972905 zinc finger protein 385A isoform b [Homo sapiens]
Length = 305
Score = 43.1 bits (100), Expect = 2e-04
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 19/154 (12%)
Query: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAPVVAS 136
C +C + F S A++HY+G HA+R+K + KT + ++ P D AP ++
Sbjct: 76 CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPG-----VREPG-DPAPPGST 129
Query: 137 PYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLG-TTLDMGELRGLR 195
P + D P +H + + + +LG T E
Sbjct: 130 P---TNGDGVA---------PRPGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQD 177
Query: 196 RNYRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
R + C IC+V +NS Q H+ +H+ + K
Sbjct: 178 RTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGK 211
Score = 32.3 bits (72), Expect = 0.35
Identities = 41/181 (22%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKNK 75
C +C + S+SQ AHY+ +HA +V+ G A + R + D
Sbjct: 76 CNICQIRFNSQSQAEAHYKGNRHARRVK----------GIEAAKTRGREPGVREPGD--- 122
Query: 76 CCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKP-PRMDTAPVV 134
A + G A R KT L+ + L P+K PR+
Sbjct: 123 ----------PAPPGSTPTNGDGVAPRPG--TKHKTILE-ARSGLGPIKAYPRLGPPTPG 169
Query: 135 ASPYQRRDSDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARV--ALLEQLGTTLDMGELR 192
+D +C +C N+ + +QH ++H+ A LL + + GEL
Sbjct: 170 EPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGVAGKPNPLLSRHKKSRGAGELA 229
Query: 193 G 193
G
Sbjct: 230 G 230
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 2 KSSDIDQDLFTDSY----CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPA 57
K+++ D F D C VC ++ + HY S H K++ + D PA
Sbjct: 1393 KTTNFALDKFLDPARPYKCTVCKESFTQKNILLVHYNSVSHLHKMKKAAI----DPSAPA 1448
Query: 58 KRLRSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTA 117
+ + DK CT+C +S+ + + H + +H R + G KT K
Sbjct: 1449 RGEAGAPPTTTAATDKPFKCTVCRVSYNQSSTLEIHMRSVLHQTRSR---GTKTDSKIEG 1505
Query: 118 TPLSPLKPPRMDTAPVVASPYQRRDSDRY 146
S +P +T V + + D+ +
Sbjct: 1506 PERSQEEPKEGETEGEVGTEKKGPDTSGF 1534
Score = 32.3 bits (72), Expect = 0.35
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 147 CGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLGTTLDMGE----LRGLRRNYRCTI 202
C +C F + HY+ H + A+ + G + ++CT+
Sbjct: 1411 CTVCKESFTQKNILLVHYNSVSHLHKMKKAAIDPSAPARGEAGAPPTTTAATDKPFKCTV 1470
Query: 203 CSVSLNSIEQYHAHLKGSKHQT 224
C VS N H++ HQT
Sbjct: 1471 CRVSYNQSSTLEIHMRSVLHQT 1492
Score = 30.4 bits (67), Expect = 1.3
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 147 CGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQ------------LGTTLDMGELRGL 194
C LC Q H KH + A L + LG G + L
Sbjct: 844 CKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHLREGGGAMGTPSPASLGDGAPYGSVSPL 903
Query: 195 RRNYRCTICSVSLNSIEQYHAHLKGSKHQTN 225
+ RC IC NS E+ H +G+ H+ N
Sbjct: 904 --HLRCNICDFESNSKEKMQLHARGAAHEEN 932
Score = 28.5 bits (62), Expect = 5.0
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKNK 75
C VC+ ++ H +S KH + ++ + P G P + + D + K+
Sbjct: 594 CDVCNYSTTTKGNLSIHMQSDKHLANLQ-GFQAGPGGQGSPTEASLPPSAGDKEPKTKSS 652
Query: 76 C-CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAP 132
C +C+ + H + H + + L+L + PL + P PP P
Sbjct: 653 WQCKVCSYETNISRNLRIHMTSEKHMQNV-LMLHQGLPLGLPPGLMGPGPPPPPGATP 709
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDG----GCPAKRLRSENGSDADMV 71
CK+C ++ H ++ KHA K +L H R+G G P+ + +
Sbjct: 844 CKLCCYGTQLKANFQLHLKTDKHAQKYQL--AAHLREGGGAMGTPSPASLGDGAPYGSVS 901
Query: 72 DKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKL 105
+ C +C+ S H +G H + ++
Sbjct: 902 PLHLRCNICDFESNSKEKMQLHARGAAHEENSQI 935
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 198 YRCTICSVSLNSIEQYHAHLKGSKHQTNLK 227
YRC +C+ S + H++ KH NL+
Sbjct: 592 YRCDVCNYSTTTKGNLSIHMQSDKHLANLQ 621
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 2 KSSDIDQDLFTDSY----CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPA 57
K+++ D F D C VC ++ + HY S H K++ + D PA
Sbjct: 1309 KTTNFALDKFLDPARPYKCTVCKESFTQKNILLVHYNSVSHLHKMKKAAI----DPSAPA 1364
Query: 58 KRLRSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTA 117
+ + DK CT+C +S+ + + H + +H R + G KT K
Sbjct: 1365 RGEAGAPPTTTAATDKPFKCTVCRVSYNQSSTLEIHMRSVLHQTRSR---GTKTDSKIEG 1421
Query: 118 TPLSPLKPPRMDTAPVVASPYQRRDSDRY 146
S +P +T V + + D+ +
Sbjct: 1422 PERSQEEPKEGETEGEVGTEKKGPDTSGF 1450
Score = 32.3 bits (72), Expect = 0.35
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 147 CGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLGTTLDMGE----LRGLRRNYRCTI 202
C +C F + HY+ H + A+ + G + ++CT+
Sbjct: 1327 CTVCKESFTQKNILLVHYNSVSHLHKMKKAAIDPSAPARGEAGAPPTTTAATDKPFKCTV 1386
Query: 203 CSVSLNSIEQYHAHLKGSKHQT 224
C VS N H++ HQT
Sbjct: 1387 CRVSYNQSSTLEIHMRSVLHQT 1408
Score = 30.4 bits (67), Expect = 1.3
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 147 CGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQ------------LGTTLDMGELRGL 194
C LC Q H KH + A L + LG G + L
Sbjct: 760 CKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHLREGGGAMGTPSPASLGDGAPYGSVSPL 819
Query: 195 RRNYRCTICSVSLNSIEQYHAHLKGSKHQTN 225
+ RC IC NS E+ H +G+ H+ N
Sbjct: 820 --HLRCNICDFESNSKEKMQLHARGAAHEEN 848
Score = 29.3 bits (64), Expect = 2.9
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 20/151 (13%)
Query: 22 QLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKNKCCTLCN 81
Q + R H ES H S + GG + R E+ + K C +CN
Sbjct: 466 QTLDVHMREKHPESNSHCS--------YCSAGGAHPRLARGESYNCGY---KPYRCDVCN 514
Query: 82 MSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAPVVASPYQRR 141
S T+ H Q H L+ + P + P + L P D P S +Q
Sbjct: 515 YSTTTKGNLSIHMQSDKHLANLQGF--QAGPGGQGSPPEASLPPSAGDKEPKTKSSWQ-- 570
Query: 142 DSDRYCGLCAAWFNNPLMAQQHYDGKKHKKN 172
C +C+ N + H +KH +N
Sbjct: 571 -----CKVCSYETNISRNLRIHMTSEKHMQN 596
Score = 28.9 bits (63), Expect = 3.8
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 1/117 (0%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKNK 75
C VC+ ++ H +S KH + ++ + G P L G +
Sbjct: 510 CDVCNYSTTTKGNLSIHMQSDKHLANLQGFQAGPGGQGSPPEASLPPSAGDKEPKTKSSW 569
Query: 76 CCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAP 132
C +C+ + H + H + + L+L + PL + P PP P
Sbjct: 570 QCKVCSYETNISRNLRIHMTSEKHMQNV-LMLHQGLPLGLPPGLMGPGPPPPPGATP 625
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDG----GCPAKRLRSENGSDADMV 71
CK+C ++ H ++ KHA K +L H R+G G P+ + +
Sbjct: 760 CKLCCYGTQLKANFQLHLKTDKHAQKYQL--AAHLREGGGAMGTPSPASLGDGAPYGSVS 817
Query: 72 DKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKL 105
+ C +C+ S H +G H + ++
Sbjct: 818 PLHLRCNICDFESNSKEKMQLHARGAAHEENSQI 851
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 198 YRCTICSVSLNSIEQYHAHLKGSKHQTNLK 227
YRC +C+ S + H++ KH NL+
Sbjct: 508 YRCDVCNYSTTTKGNLSIHMQSDKHLANLQ 537
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 11/149 (7%)
Query: 2 KSSDIDQDLFTDSY----CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPA 57
K+++ D F D C VC ++ + HY S H K++ + D PA
Sbjct: 1309 KTTNFALDKFLDPARPYKCTVCKESFTQKNILLVHYNSVSHLHKMKKAAI----DPSAPA 1364
Query: 58 KRLRSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTA 117
+ + DK CT+C +S+ + + H + +H R + G KT K
Sbjct: 1365 RGEAGAPPTTTAATDKPFKCTVCRVSYNQSSTLEIHMRSVLHQTRSR---GTKTDSKIEG 1421
Query: 118 TPLSPLKPPRMDTAPVVASPYQRRDSDRY 146
S +P +T V + + D+ +
Sbjct: 1422 PERSQEEPKEGETEGEVGTEKKGPDTSGF 1450
Score = 32.3 bits (72), Expect = 0.35
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 147 CGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQLGTTLDMGE----LRGLRRNYRCTI 202
C +C F + HY+ H + A+ + G + ++CT+
Sbjct: 1327 CTVCKESFTQKNILLVHYNSVSHLHKMKKAAIDPSAPARGEAGAPPTTTAATDKPFKCTV 1386
Query: 203 CSVSLNSIEQYHAHLKGSKHQT 224
C VS N H++ HQT
Sbjct: 1387 CRVSYNQSSTLEIHMRSVLHQT 1408
Score = 30.4 bits (67), Expect = 1.3
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 147 CGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLEQ------------LGTTLDMGELRGL 194
C LC Q H KH + A L + LG G + L
Sbjct: 760 CKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHLREGGGAMGTPSPASLGDGAPYGSVSPL 819
Query: 195 RRNYRCTICSVSLNSIEQYHAHLKGSKHQTN 225
+ RC IC NS E+ H +G+ H+ N
Sbjct: 820 --HLRCNICDFESNSKEKMQLHARGAAHEEN 848
Score = 29.3 bits (64), Expect = 2.9
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 20/151 (13%)
Query: 22 QLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKNKCCTLCN 81
Q + R H ES H S + GG + R E+ + K C +CN
Sbjct: 466 QTLDVHMREKHPESNSHCS--------YCSAGGAHPRLARGESYNCGY---KPYRCDVCN 514
Query: 82 MSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAPVVASPYQRR 141
S T+ H Q H L+ + P + P + L P D P S +Q
Sbjct: 515 YSTTTKGNLSIHMQSDKHLANLQGF--QAGPGGQGSPPEASLPPSAGDKEPKTKSSWQ-- 570
Query: 142 DSDRYCGLCAAWFNNPLMAQQHYDGKKHKKN 172
C +C+ N + H +KH +N
Sbjct: 571 -----CKVCSYETNISRNLRIHMTSEKHMQN 596
Score = 28.9 bits (63), Expect = 3.8
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 1/117 (0%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRSENGSDADMVDKNK 75
C VC+ ++ H +S KH + ++ + G P L G +
Sbjct: 510 CDVCNYSTTTKGNLSIHMQSDKHLANLQGFQAGPGGQGSPPEASLPPSAGDKEPKTKSSW 569
Query: 76 CCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAP 132
C +C+ + H + H + + L+L + PL + P PP P
Sbjct: 570 QCKVCSYETNISRNLRIHMTSEKHMQNV-LMLHQGLPLGLPPGLMGPGPPPPPGATP 625
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 16 CKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDG----GCPAKRLRSENGSDADMV 71
CK+C ++ H ++ KHA K +L H R+G G P+ + +
Sbjct: 760 CKLCCYGTQLKANFQLHLKTDKHAQKYQL--AAHLREGGGAMGTPSPASLGDGAPYGSVS 817
Query: 72 DKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKL 105
+ C +C+ S H +G H + ++
Sbjct: 818 PLHLRCNICDFESNSKEKMQLHARGAAHEENSQI 851
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 198 YRCTICSVSLNSIEQYHAHLKGSKHQTNLK 227
YRC +C+ S + H++ KH NL+
Sbjct: 508 YRCDVCNYSTTTKGNLSIHMQSDKHLANLQ 537
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 37.4 bits (85), Expect = 0.011
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 165 DGKKHKKNAARVALLEQLGTTLDMGELRGLRRNYRCTICSVSLNSIEQYHAHLKGSKHQT 224
+ + ++ R LE + D ++ +Y C +C N+ Y AH +G KHQT
Sbjct: 21 ESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQT 80
Query: 225 NLKNK 229
NL +
Sbjct: 81 NLARR 85
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 123 LKPPRMDTAPVVASPYQRRD--SDRYCGLCAAWFNNPLMAQQHYDGKKHKKNAARVALLE 180
L+ ++T + PY ++ C LC NN H GKKH+ N AR A E
Sbjct: 30 LRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKE 89
>gi|58533172 zinc finger, matrin type 1 isoform 3 [Homo sapiens]
Length = 467
Score = 37.0 bits (84), Expect = 0.014
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 196 RNYRCTICSVSLNSIEQYHAHLKGSKHQ 223
R Y C ICS++ S++ + +H++GS+HQ
Sbjct: 2 RTYVCHICSIAFTSLDMFRSHMQGSEHQ 29
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 35.0 bits (79), Expect = 0.053
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 198 YRCTICSVSLNSIEQYHAHLKGSKHQTNLKNK 229
Y C +C V + SI H H+K +H+ N+K K
Sbjct: 244 YTCRLCDVLIESIAFAHKHIKEKRHKKNIKEK 275
>gi|60498992 forkhead box P4 isoform 3 [Homo sapiens]
Length = 678
Score = 34.3 bits (77), Expect = 0.091
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 83 SFTSAVV--ADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAPV-VASPYQ 139
SF+ V ADS G +H P + A P++PL+PP + +A + P +
Sbjct: 390 SFSKVTVSAADSFPDGLVH------------PPTSAAAPVTPLRPPGLGSASLHGGGPAR 437
Query: 140 RRDSDRYC 147
RR SD++C
Sbjct: 438 RRSSDKFC 445
>gi|60498989 forkhead box P4 isoform 1 [Homo sapiens]
Length = 680
Score = 34.3 bits (77), Expect = 0.091
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 83 SFTSAVV--ADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAPV-VASPYQ 139
SF+ V ADS G +H P + A P++PL+PP + +A + P +
Sbjct: 392 SFSKVTVSAADSFPDGLVH------------PPTSAAAPVTPLRPPGLGSASLHGGGPAR 439
Query: 140 RRDSDRYC 147
RR SD++C
Sbjct: 440 RRSSDKFC 447
>gi|29789367 forkhead box P4 isoform 2 [Homo sapiens]
Length = 667
Score = 33.5 bits (75), Expect = 0.16
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 13/59 (22%)
Query: 90 ADSHYQGKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAPV-VASPYQRRDSDRYC 147
ADS G +H P + A P++PL+PP + +A + P +RR SD++C
Sbjct: 388 ADSFPDGLVH------------PPTSAAAPVTPLRPPGLGSASLHGGGPARRRSSDKFC 434
>gi|41349474 PR domain containing 4 [Homo sapiens]
Length = 801
Score = 33.1 bits (74), Expect = 0.20
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 137 PYQRRDSDRYCGLCAAWFNNPLMAQQHYDG----KKHKKNAARVALLEQLGTTLDMGELR 192
P ++ C +C F +P H+ G K HK + A + +
Sbjct: 582 PSHSKERKWKCSMCPQAFISPSKLHVHFMGHMGMKPHKCDFCSKAFSDPSNLRTHLKIHT 641
Query: 193 GLRRNYRCTICSVSLNSIEQYHAHLKGSKHQTNLK 227
G ++NYRCT+C S +H+ + NLK
Sbjct: 642 G-QKNYRCTLCDKSFTQKAHLESHMVIHTGEKNLK 675
>gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens]
Length = 1342
Score = 32.7 bits (73), Expect = 0.26
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 48 LHPRDGGCPAKRLRSEN--GSDADMVDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKL 105
LHP GC A + GS+A++ +K C + S + DS Y H++R L
Sbjct: 1084 LHPMPRGCLASESSEGHVTGSEAELQEKVSMCRSRSRSRSPRPRGDSAY----HSQRHSL 1139
Query: 106 LLGEKTPLKTTATPLSPLKPPRMDTAPV 133
L TP++PL PP ++ V
Sbjct: 1140 L-----------TPVTPLSPPGLEEEDV 1156
>gi|21464115 methyl-CpG binding domain protein 1 isoform 2 [Homo
sapiens]
Length = 586
Score = 32.7 bits (73), Expect = 0.26
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 117 ATPLSPLKPPRMDTAPVVASPYQRRDSDRYCGLCAA 152
A PL P PP P PY R +R CG CAA
Sbjct: 286 AQPLPP-PPPSQSPEPTEPQPYTNRRQNRKCGACAA 320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,151,187
Number of Sequences: 37866
Number of extensions: 413468
Number of successful extensions: 1965
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1559
Number of HSP's gapped (non-prelim): 361
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.