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Search of human proteins with 4809284
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4809284 interferon regulatory factor 7 isoform b [Homo
sapiens]
(474 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens] 993 0.0
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 977 0.0
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 966 0.0
gi|148833515 interferon regulatory factor 5 isoform c [Homo sapi... 158 9e-39
gi|148833492 interferon regulatory factor 5 isoform c [Homo sapi... 158 9e-39
gi|148833488 interferon regulatory factor 5 isoform c [Homo sapi... 158 9e-39
gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens] 158 9e-39
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi... 157 2e-38
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 157 2e-38
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens] 157 2e-38
gi|4504725 interferon regulatory factor 3 [Homo sapiens] 154 1e-37
gi|5453700 interferon regulatory factor 6 [Homo sapiens] 150 2e-36
gi|167555104 interferon regulatory factor 4 [Homo sapiens] 121 2e-27
gi|25282407 interferon-stimulated transcription factor 3, gamma ... 107 2e-23
gi|4504567 interferon regulatory factor 8 [Homo sapiens] 89 9e-18
gi|153082752 interferon regulatory factor 2 [Homo sapiens] 66 8e-11
gi|4504721 interferon regulatory factor 1 [Homo sapiens] 64 4e-10
gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens] 54 2e-07
gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens] 54 2e-07
gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo ... 54 2e-07
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 49 1e-05
gi|116292174 fidgetin-like 2 [Homo sapiens] 45 2e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 44 4e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 42 0.002
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 42 0.002
gi|150170670 piccolo isoform 2 [Homo sapiens] 41 0.002
gi|150378539 piccolo isoform 1 [Homo sapiens] 41 0.002
gi|19924099 synapsin I isoform Ia [Homo sapiens] 41 0.003
gi|19924097 synapsin I isoform Ib [Homo sapiens] 41 0.003
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 40 0.006
>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
Length = 474
Score = 993 bits (2566), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
Sbjct: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
Query: 61 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK 120
KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
Sbjct: 61 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK 120
Query: 121 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG 180
VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
Sbjct: 121 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG 180
Query: 181 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEP 240
DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEP
Sbjct: 181 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEP 240
Query: 241 YLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQV 300
YLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQV
Sbjct: 241 YLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQV 300
Query: 301 AFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASP 360
AFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASP
Sbjct: 301 AFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASP 360
Query: 361 STPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLV 420
STPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLV
Sbjct: 361 STPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLV 420
Query: 421 LVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA 474
LVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
Sbjct: 421 LVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA 474
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 977 bits (2526), Expect = 0.0
Identities = 474/503 (94%), Positives = 474/503 (94%), Gaps = 29/503 (5%)
Query: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
Sbjct: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
Query: 61 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK 120
KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
Sbjct: 61 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK 120
Query: 121 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG 180
VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
Sbjct: 121 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG 180
Query: 181 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG------------- 227
DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
Sbjct: 181 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV 240
Query: 228 ----------------EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV 271
EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
Sbjct: 241 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV 300
Query: 272 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE 331
LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
Sbjct: 301 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE 360
Query: 332 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR 391
LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
Sbjct: 361 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR 420
Query: 392 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 451
QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
Sbjct: 421 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 480
Query: 452 CLSSANSLYDDIECFLMELEQPA 474
CLSSANSLYDDIECFLMELEQPA
Sbjct: 481 CLSSANSLYDDIECFLMELEQPA 503
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 966 bits (2497), Expect = 0.0
Identities = 468/497 (94%), Positives = 468/497 (94%), Gaps = 29/497 (5%)
Query: 7 RAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVA 66
RAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVA
Sbjct: 20 RAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVA 79
Query: 67 RGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVYALSR 126
RGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVYALSR
Sbjct: 80 RGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVYALSR 139
Query: 127 ELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQA 186
ELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQA
Sbjct: 140 ELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQA 199
Query: 187 VQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG------------------- 227
VQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
Sbjct: 200 VQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSP 259
Query: 228 ----------EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG 277
EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG
Sbjct: 260 GPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVG 319
Query: 278 HPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQL 337
HPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQL
Sbjct: 320 HPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQL 379
Query: 338 WARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSP 397
WARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSP
Sbjct: 380 WARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSP 439
Query: 398 RYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSAN 457
RYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSAN
Sbjct: 440 RYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSAN 499
Query: 458 SLYDDIECFLMELEQPA 474
SLYDDIECFLMELEQPA
Sbjct: 500 SLYDDIECFLMELEQPA 516
>gi|148833515 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 158 bits (400), Expect = 9e-39
Identities = 134/486 (27%), Positives = 197/486 (40%), Gaps = 109/486 (22%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 C--------------WREGPGTDQTEAEA----------------------PAAVPPPQG 152
C + G G ++ E E P PP
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
Query: 153 GPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPG 212
GPP P P PL P G+ LL+ P+P P
Sbjct: 181 GPPAP----------DPSPLAPPPGNPAGFR-----------ELLSEVLEPGPLPASLPP 219
Query: 213 EGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVL 272
G++ LP + +SP T L++ Y+GR
Sbjct: 220 AGEQLLP-------------------DLLISPHMLPLTD--------LEIKFQYRGRPPR 252
Query: 273 QKVVGHP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVA 325
+ +P C Y + + +QV FPSP ++P KQ YT +LL +
Sbjct: 253 ALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLD 312
Query: 326 PGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQEL 385
GL L+L+G L+A R+ +CKV+W GP SA S P + R T +F F EL
Sbjct: 313 RGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNEL 369
Query: 386 VEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLD 445
+ F+ Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S D
Sbjct: 370 ILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSAD 429
Query: 446 SSSLSL 451
S L +
Sbjct: 430 SIRLQI 435
>gi|148833492 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 158 bits (400), Expect = 9e-39
Identities = 134/486 (27%), Positives = 197/486 (40%), Gaps = 109/486 (22%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 C--------------WREGPGTDQTEAEA----------------------PAAVPPPQG 152
C + G G ++ E E P PP
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
Query: 153 GPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPG 212
GPP P P PL P G+ LL+ P+P P
Sbjct: 181 GPPAP----------DPSPLAPPPGNPAGFR-----------ELLSEVLEPGPLPASLPP 219
Query: 213 EGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVL 272
G++ LP + +SP T L++ Y+GR
Sbjct: 220 AGEQLLP-------------------DLLISPHMLPLTD--------LEIKFQYRGRPPR 252
Query: 273 QKVVGHP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVA 325
+ +P C Y + + +QV FPSP ++P KQ YT +LL +
Sbjct: 253 ALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLD 312
Query: 326 PGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQEL 385
GL L+L+G L+A R+ +CKV+W GP SA S P + R T +F F EL
Sbjct: 313 RGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNEL 369
Query: 386 VEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLD 445
+ F+ Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S D
Sbjct: 370 ILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSAD 429
Query: 446 SSSLSL 451
S L +
Sbjct: 430 SIRLQI 435
>gi|148833488 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 158 bits (400), Expect = 9e-39
Identities = 134/486 (27%), Positives = 197/486 (40%), Gaps = 109/486 (22%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 C--------------WREGPGTDQTEAEA----------------------PAAVPPPQG 152
C + G G ++ E E P PP
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLQPPVVL 180
Query: 153 GPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPG 212
GPP P P PL P G+ LL+ P+P P
Sbjct: 181 GPPAP----------DPSPLAPPPGNPAGFR-----------ELLSEVLEPGPLPASLPP 219
Query: 213 EGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVL 272
G++ LP + +SP T L++ Y+GR
Sbjct: 220 AGEQLLP-------------------DLLISPHMLPLTD--------LEIKFQYRGRPPR 252
Query: 273 QKVVGHP-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVA 325
+ +P C Y + + +QV FPSP ++P KQ YT +LL +
Sbjct: 253 ALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLD 312
Query: 326 PGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQEL 385
GL L+L+G L+A R+ +CKV+W GP SA S P + R T +F F EL
Sbjct: 313 RGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNEL 369
Query: 386 VEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLD 445
+ F+ Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S D
Sbjct: 370 ILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSAD 429
Query: 446 SSSLSL 451
S L +
Sbjct: 430 SIRLQI 435
>gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens]
Length = 504
Score = 158 bits (400), Expect = 9e-39
Identities = 136/469 (28%), Positives = 198/469 (42%), Gaps = 59/469 (12%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 CWREGPGTDQTEAEAPAAVPPPQGGPPG---------------PFLAHTHAGLQAPGPLP 173
C GP AP PP+ G P L+ T A P P
Sbjct: 121 C-SNGP--------APTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTP 171
Query: 174 APAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLP--LTGACAGGE--A 229
+ +Q L ++ DP P P G L+ G A
Sbjct: 172 YSLLKEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPA 231
Query: 230 AAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHP-SCTFLYGPP 288
+ P + Q P L SP L++ Y+GR + +P C Y
Sbjct: 232 SLPPAGEQLLPDLLISPHMLPLTD------LEIKFQYRGRPPRALTISNPHGCRLFYSQL 285
Query: 289 DPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRM 342
+ + +QV FPSP ++P KQ YT +LL + GL L+L+G L+A R+
Sbjct: 286 EATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRL 345
Query: 343 GKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIY 402
+CKV+W GP SA S P + R T +F F EL+ F+ Q P + I+
Sbjct: 346 CQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIF 402
Query: 403 LGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 451
FG++ +P+EK L+ V++ P R+ LE E S DS L +
Sbjct: 403 FCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQI 451
>gi|148833496 interferon regulatory factor 5 isoform b [Homo
sapiens]
Length = 498
Score = 157 bits (397), Expect = 2e-38
Identities = 135/480 (28%), Positives = 200/480 (41%), Gaps = 87/480 (18%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 C--------------WREGPGTDQTEAEA----------------PAAVPPPQGGPPGPF 158
C + G G ++ E E P + PP PP
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPP--- 177
Query: 159 LAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGL 218
LQ P L PA D L + + LL+ P+P P G++ L
Sbjct: 178 -TLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRE-LLSEVLEPGPLPASLPPAGEQLL 235
Query: 219 PLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGH 278
P + +SP T L++ Y+GR + +
Sbjct: 236 P-------------------DLLISPHMLPLTD--------LEIKFQYRGRPPRALTISN 268
Query: 279 P-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE 331
P C Y + + +QV FPSP ++P KQ YT +LL + GL L+
Sbjct: 269 PHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQ 328
Query: 332 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR 391
L+G L+A R+ +CKV+W GP SA S P + R T +F F EL+ F+
Sbjct: 329 LQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNELILFQKG 385
Query: 392 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 451
Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S DS L +
Sbjct: 386 QTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQI 445
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 157 bits (397), Expect = 2e-38
Identities = 135/475 (28%), Positives = 201/475 (42%), Gaps = 61/475 (12%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 C--------------WREGPGTDQTEAEAPAAVPPP-------QGGPPGPFLAHTHAGLQ 167
C + G G ++ E E + P Q GP + ++
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVK 180
Query: 168 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLP--LTGACA 225
P L P L +Q L ++ DP P P G L+
Sbjct: 181 WPPTLQPPT-----LRPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLE 235
Query: 226 GGE--AAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHP-SCT 282
G A+ P + Q P L SP L++ Y+GR + +P C
Sbjct: 236 PGPLPASLPPAGEQLLPDLLISPHMLPLTD------LEIKFQYRGRPPRALTISNPHGCR 289
Query: 283 FLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQ 336
Y + + +QV FPSP ++P KQ YT +LL + GL L+L+G
Sbjct: 290 LFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQD 349
Query: 337 LWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGS 396
L+A R+ +CKV+W GP SA S P + R T +F F EL+ F+ Q
Sbjct: 350 LYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNELILFQKGQTNTP 406
Query: 397 PRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 451
P + I+ FG++ +P+EK L+ V++ P R+ LE E S DS L +
Sbjct: 407 PPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQI 461
>gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]
Length = 498
Score = 157 bits (397), Expect = 2e-38
Identities = 135/480 (28%), Positives = 200/480 (41%), Gaps = 87/480 (18%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGR 69
RV WL+ +++S Y GLQW++ + F +PW+H R S+ D IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADPHKVYALSREL 128
+ + A+ A WK N RCAL +R F ++ D D P P+K+Y E+
Sbjct: 74 YTEG---------VDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIY----EV 120
Query: 129 C--------------WREGPGTDQTEAEA----------------PAAVPPPQGGPPGPF 158
C + G G ++ E E P + PP PP
Sbjct: 121 CSNGPAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPP--- 177
Query: 159 LAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGL 218
LQ P L PA D L + + LL+ P+P P G++ L
Sbjct: 178 -TLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRE-LLSEVLEPGPLPASLPPAGEQLL 235
Query: 219 PLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGH 278
P + +SP T L++ Y+GR + +
Sbjct: 236 P-------------------DLLISPHMLPLTD--------LEIKFQYRGRPPRALTISN 268
Query: 279 P-SCTFLYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE 331
P C Y + + +QV FPSP ++P KQ YT +LL + GL L+
Sbjct: 269 PHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQ 328
Query: 332 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR 391
L+G L+A R+ +CKV+W GP SA S P + R T +F F EL+ F+
Sbjct: 329 LQGQDLYAIRLCQCKVFW--SGPCASAHDSCPN-PIQREVKTKLFSLEHFLNELILFQKG 385
Query: 392 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL 451
Q P + I+ FG++ +P+EK L+ V++ P R+ LE E S DS L +
Sbjct: 386 QTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQI 445
>gi|4504725 interferon regulatory factor 3 [Homo sapiens]
Length = 427
Score = 154 bits (390), Expect = 1e-37
Identities = 131/466 (28%), Positives = 196/466 (42%), Gaps = 61/466 (13%)
Query: 10 PRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGR 69
PR+L WL+ ++ G EG+ W++++RT FR+PWKH R+D + D IF+AWA A G
Sbjct: 6 PRIL--PWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGA 63
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVYALSRELC 129
+ P G P+ T WK NFR AL + D S DP DPHK+Y
Sbjct: 64 YVP----GRDKPDLPT-----WKRNFRSALNRKEGLRLAEDRSKDPHDPHKIY------- 107
Query: 130 WREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQ 189
E + + P P GG + AP D G L +
Sbjct: 108 --EFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPE 165
Query: 190 SCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSAC 249
C P P ++P + ++P P L PS +
Sbjct: 166 PC-------------PQPLRSP-------------------SLDNP-TPFPNLGPSENPL 192
Query: 250 TAVQEP-SPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPA-E 307
+ P +VT Y+GR V Q+ + P L G + R V P P
Sbjct: 193 KRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVG-SEVGDRTLPGWPVTLPDPGMS 251
Query: 308 LPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLL 367
L D+ + Y +L + GL L G LWA+R+G C YW V S P +
Sbjct: 252 LTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEV 311
Query: 368 PRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPW 427
P++ + +FD F +L+ F R SPRY ++ G+ +P K LV+VK+ P
Sbjct: 312 PKDKEGGVFDLGPFIVDLITFTEGSGR-SPRYALWFCVGESWPQDQPWTKRLVMVKVVPT 370
Query: 428 LCRVHLEGTQREGVSSLDSSSLSLCLSSANSL---YDDIECFLMEL 470
R +E + G SSL+ +++ L +S+++ L D + +L +L
Sbjct: 371 CLRALVEMARVGGASSLE-NTVDLHISNSHPLSLTSDQYKAYLQDL 415
>gi|5453700 interferon regulatory factor 6 [Homo sapiens]
Length = 467
Score = 150 bits (380), Expect = 2e-36
Identities = 137/493 (27%), Positives = 207/493 (41%), Gaps = 77/493 (15%)
Query: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKD-LSEADARI 59
MAL P R V WL+ ++ SG Y GL WL F++PWKH R E + I
Sbjct: 1 MALHPRR----VRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTI 56
Query: 60 FKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGD-PADP 118
FKAWAV G++ + + A WK RCAL +R F ++ D + + P +P
Sbjct: 57 FKAWAVETGKYQEG---------VDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNP 107
Query: 119 HKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGD 178
K+Y ++C +P PQG + PG + D
Sbjct: 108 VKIY----QVC----------------DIPQPQGS------------IINPGSTGSAPWD 135
Query: 179 KGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQA 238
+ D V + D L S P+ P G P+ A G + SP
Sbjct: 136 EKD---NDVDEEDEEDEL-DQSQHHVPIQDTFPFLNINGSPMAPASVGNCSVGNCSPEAV 191
Query: 239 EPYLSPS----PSACTAVQEPSPGA---------LDVTIMYKGRTVLQKV-VGHPS-CTF 283
P P P A SP LD+ Y+G+ Q + V +P C
Sbjct: 192 WPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYGQTMTVSNPQGCRL 251
Query: 284 LYGPPDPAVRATDP------QQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQL 337
YG P + +QV FP P + ++KQ +T +LL + GL LE+ G +
Sbjct: 252 FYGDLGPMPDQEELFGPVSLEQVKFPGPEHITNEKQKLFTSKLLDVMDRGLILEVSGHAI 311
Query: 338 WARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSP 397
+A R+ +CKVYW P +P+ L+ R +F F +L+ + Q P
Sbjct: 312 YAIRLCQCKVYWSGPCAPSLVAPN----LIERQKKVKLFCLETFLSDLIAHQKGQIEKQP 367
Query: 398 RYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSAN 457
+ IYL FG++ G+P E+ L+LV++ P + R+ E + S DS S+ L +S+ +
Sbjct: 368 PFEIYLCFGEEWPDGKPLERKLILVQVIPVVARMIYEMFSGDFTRSFDSGSVRLQISTPD 427
Query: 458 SLYDDIECFLMEL 470
+ D+I L +L
Sbjct: 428 -IKDNIVAQLKQL 439
>gi|167555104 interferon regulatory factor 4 [Homo sapiens]
Length = 451
Score = 121 bits (303), Expect = 2e-27
Identities = 123/432 (28%), Positives = 194/432 (44%), Gaps = 63/432 (14%)
Query: 16 EWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSS 74
+WL+ +I SG Y GL W +E ++ FR+PWKH ++D + E DA +FKAWA+ +G++
Sbjct: 26 QWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKF---- 81
Query: 75 RGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRELCWREG 133
R G P+ T WKT RCAL + F L + S D +DP+KVY + E +
Sbjct: 82 REGIDKPDPPT-----WKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKK-- 134
Query: 134 PGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPA-PAGDKGDLLLQAVQQSCL 192
G Q E PQ P+ T P P+ PA + ++ + +S
Sbjct: 135 -GAKQLTLE------DPQMSMSHPYTMTT--------PYPSLPAQQVHNYMMPPLDRS-W 178
Query: 193 ADHLLTASWGADPV-------PTKAPGEG---QEGLPLTG---ACAGGEAAAPESPHQAE 239
D++ P P +G + G +TG ACA E+ AP P E
Sbjct: 179 RDYVPDQPHPEIPYQCPMTFGPRGHHWQGPACENGCQVTGTFYACAPPESQAPGVP--TE 236
Query: 240 PYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHP-SCTFLYGPPDPAVRATDPQ 298
P + + + S L + + Y+ V + P C +G A++
Sbjct: 237 PSIRSAEALAF-----SDCRLHICLYYREILVKELTTSSPEGCRISHG---HTYDASNLD 288
Query: 299 QVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSA 358
QV FP P D Q + E+LL H+ G+ L + L+A+R+ + ++YW+ GP
Sbjct: 289 QVLFPYP---EDNGQRKNIEKLLSHLERGVVLWMAPDGLYAKRLCQSRIYWD--GPLALC 343
Query: 359 SPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKS 418
+ L R+ +FD + F EL F A R PR+ + L FG++ + +++
Sbjct: 344 NDRPNK--LERDQTCKLFDTQQFLSELQAF-AHHGRSLPRFQVTLCFGEEFPDPQ-RQRK 399
Query: 419 LVLVKLEPWLCR 430
L+ +EP L R
Sbjct: 400 LITAHVEPLLAR 411
>gi|25282407 interferon-stimulated transcription factor 3, gamma
48kDa [Homo sapiens]
Length = 393
Score = 107 bits (267), Expect = 2e-23
Identities = 107/432 (24%), Positives = 173/432 (40%), Gaps = 60/432 (13%)
Query: 17 WLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE-ADARIFKAWAVARGRWPPSSR 75
W++ ++ SG + G+ W D A+T FR+PWKH ++D E DA FKAWA+ +G++
Sbjct: 15 WVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKY----- 69
Query: 76 GGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRELCWREGP 134
E +T A WKT RCAL + F + + D A+P+KVY L P
Sbjct: 70 -----KEGDTGGPAVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPPGIVSGQP 124
Query: 135 GTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLAD 194
GT + ++ H+ + + A + L +V Q L +
Sbjct: 125 GTQKVPSK------------------RQHSSVSSERKEEEDA-MQNCTLSPSVLQDSLNN 165
Query: 195 HLLTASWGA--DPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAV 252
AS GA + + + E +T EA E L P P
Sbjct: 166 EEEGASGGAVHSDIGSSSSSSSPEPQEVTDTT---EAPFQGDQRSLEFLLPPEPDY---- 218
Query: 253 QEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQK 312
+L +T +Y GR V + V C + +P+ + +QV FP P L
Sbjct: 219 ------SLLLTFIYNGRVVGEAQVQSLDCRLV---AEPSGSESSMEQVLFPKPGPLEP-- 267
Query: 313 QLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCD 372
T+ LL + G+ + L+ +R+ + W P P LLP N
Sbjct: 268 ----TQRLLSQLERGILVASNPRGLFVQRLCPIPISWNAPQAPPGPGPH----LLPSNEC 319
Query: 373 TPIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVH 432
+F F ++LV + + P++ + L F ++ ++L+ VK+E R
Sbjct: 320 VELFRTAYFCRDLVRY-FQGLGPPPKFQVTLNFWEESHGSSHTPQNLITVKMEQAFARYL 378
Query: 433 LEGTQREGVSSL 444
LE T + + L
Sbjct: 379 LEQTPEQQAAIL 390
>gi|4504567 interferon regulatory factor 8 [Homo sapiens]
Length = 426
Score = 89.0 bits (219), Expect = 9e-18
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 16 EWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSS 74
+WL+ +I S Y GL W +E ++ FR+PWKH ++D + E DA IFKAWAV +G++
Sbjct: 12 QWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF---- 67
Query: 75 RGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRE 127
E + AE A WKT RCAL + F + D S D ++P+KVY + E
Sbjct: 68 ------KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE 115
Score = 46.6 bits (109), Expect = 5e-05
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 262 VTIMYKGRTVLQKVVGHPS-CTFLYGPPD-PAVRATDPQQ---VAFPSPAELPDQKQLRY 316
++ Y G+ V Q P C P P + P+ V FP +P ++Q +
Sbjct: 207 ISFYYGGKLVGQATTTCPEGCRLSLSQPGLPGTKLYGPEGLELVRFPPADAIPSERQRQV 266
Query: 317 TEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIF 376
T +L H+ G+ L ++ +R+ + +V+ P+ L R+ +F
Sbjct: 267 TRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNK----LERDEVVQVF 322
Query: 377 DFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLE 425
D FF+EL +F Q R P + L FG++ P L+LV++E
Sbjct: 323 DTSQFFRELQQFYNSQGR-LPDGRVVLCFGEEFPDMAPLRSKLILVQIE 370
>gi|153082752 interferon regulatory factor 2 [Homo sapiens]
Length = 349
Score = 65.9 bits (159), Expect = 8e-11
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGR 69
R+ WL +I+S GL+WL++ + F++PW H AR E DA +F+ WA+ G+
Sbjct: 5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 64
Query: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNS 112
P G P+ +T WK NFRCA+ S ++D S
Sbjct: 65 HQP----GVDKPDPKT-----WKANFRCAMNSLPDIEEVKDKS 98
>gi|4504721 interferon regulatory factor 1 [Homo sapiens]
Length = 325
Score = 63.5 bits (153), Expect = 4e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARK--DLSEADARIFKAWAVARG 68
R+ WL +I+S GL W+++ F++PWKH A+ D+++ DA +F++WA+ G
Sbjct: 5 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINK-DACLFRSWAIHTG 63
Query: 69 RWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNS 112
R+ + G P+ +T WK NFRCA+ S ++D S
Sbjct: 64 RY----KAGEKEPDPKT-----WKANFRCAMNSLPDIEEVKDQS 98
>gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 54.3 bits (129), Expect = 2e-07
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 21 EISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPP 80
+I SGCY GL W D +T FR+PWKH A++ ++AW V +G+ + PP
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAPP 67
Query: 81 P 81
P
Sbjct: 68 P 68
>gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 54.3 bits (129), Expect = 2e-07
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 21 EISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPP 80
+I SGCY GL W D +T FR+PWKH A++ ++AW V +G+ + PP
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAPP 67
Query: 81 P 81
P
Sbjct: 68 P 68
>gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo
sapiens]
Length = 362
Score = 54.3 bits (129), Expect = 2e-07
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 21 EISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPP 80
+I SGCY GL W D +T FR+PWKH A++ ++AW V +G+ + PP
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAPP 67
Query: 81 P 81
P
Sbjct: 68 P 68
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 48.9 bits (115), Expect = 1e-05
Identities = 65/272 (23%), Positives = 93/272 (34%), Gaps = 55/272 (20%)
Query: 134 PGTDQTEAEAPAAVPPPQGGP---PGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQS 190
PG Q + PA +P P GP PGPF + P P+P P
Sbjct: 122 PGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFS--------- 172
Query: 191 CLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAE---PYLSPSPS 247
G +P P P G P++G G + P P P+P
Sbjct: 173 -----------GPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGPISGPNPG 221
Query: 248 ACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAE 307
P PG + I + + P+ + GP + P PSPA+
Sbjct: 222 -------PIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQ 274
Query: 308 LPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGP---------PGSA 358
+P +L+ +L +PG +R P G + GP PG
Sbjct: 275 IPGPGRLQGPGPIL---SPG---RMRSP---GSLPGLAPILGPGSGPGSGSVPAPIPGPG 325
Query: 359 SPSTPACLLPRNCDTPIF--DFRVF--FQELV 386
S PA L P++ D F D ++F F EL+
Sbjct: 326 SLPAPAPLWPQSPDASDFLPDTQLFPHFTELL 357
Score = 33.9 bits (76), Expect = 0.33
Identities = 44/181 (24%), Positives = 66/181 (36%), Gaps = 23/181 (12%)
Query: 133 GPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPA--PAGDKGDLLLQAVQQS 190
GPG + + PAA+ P PGP A Q PGPLP P G + + +
Sbjct: 79 GPGC-RAQKGIPAALSPG----PGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPA 133
Query: 191 CLADHLLTASWGADPVPTKAPGEGQEGLPLTG-ACAGGEAAAPESPHQAEPYLSPSPSAC 249
+ + + PV P G P++G A G + P S P P+P
Sbjct: 134 PIPGPI------SGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPI 187
Query: 250 TA-VQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAEL 308
+ P PG + V I + P + GP + P ++ P+P +
Sbjct: 188 PGPISGPIPGPISVPI--------PGPIPGPISGPISGPNPGPIPGPIPGPISGPNPGPI 239
Query: 309 P 309
P
Sbjct: 240 P 240
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 44.7 bits (104), Expect = 2e-04
Identities = 47/145 (32%), Positives = 58/145 (40%), Gaps = 25/145 (17%)
Query: 146 AVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGAD- 204
A+PPP G PP P+L GL AP PLPAPA A TA+ GA+
Sbjct: 218 ALPPPPGPPPAPYLT---PGLPAPTPLPAPAPP-------------TAYGFPTAAPGAES 261
Query: 205 --PVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDV 262
+ KA EG EG A A AP + + P + PGA +
Sbjct: 262 GLSLKRKAADEGPEG--RYRKYAYEPAKAPVADGASYPAADNGECRGNGFRAKPPGAAEE 319
Query: 263 TIMYKGRTVLQKVVGHPSCTFLYGP 287
G V KV+G P +YGP
Sbjct: 320 ASGKYGGGVPLKVLGSP----VYGP 340
Score = 31.2 bits (69), Expect = 2.1
Identities = 47/171 (27%), Positives = 56/171 (32%), Gaps = 33/171 (19%)
Query: 148 PPPQGGPPGPF-LAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPV 206
P P GP P+ LA H GL PG G G L G PV
Sbjct: 96 PEPWPGPEPPYPLASLHEGL--PGTKSGGGGGSGAL-------------------GGSPV 134
Query: 207 PTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACT--AVQEPSPGALDVTI 264
G E L AC G AA + YL+P A T A+ P P AL
Sbjct: 135 ---LAGNLPEPLYAGNACGGPSAAPEYAAGYGGGYLAPGYCAQTGAALPPPPPAALLQPP 191
Query: 265 MYKGRTVLQKVVGHPSCTFL----YG--PPDPAVRATDPQQVAFPSPAELP 309
G + +P+ + YG PP P P+P LP
Sbjct: 192 PPPGYGPSAPLYNYPAGGYAAQPGYGALPPPPGPPPAPYLTPGLPAPTPLP 242
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 43.5 bits (101), Expect = 4e-04
Identities = 50/182 (27%), Positives = 60/182 (32%), Gaps = 28/182 (15%)
Query: 141 AEAPAAVPPPQGGPPGPFLAHTHAGL-----QAPGPLPAPAGDKGDLLLQAVQQSCLADH 195
A P P P GP AG PGP P P G Q + S
Sbjct: 147 AAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAA--- 203
Query: 196 LLTASWGADPVPTKAPGEGQEGLPLTGACAGGE---------AAAPESPHQAEPYLSPSP 246
LL + A P + LPL A G AAAP +P P +P+P
Sbjct: 204 LLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAP 263
Query: 247 SACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGP--PDPAVRATDPQQVAFPS 304
+A A P P A L + GHP+ P P PA A P+
Sbjct: 264 AAPAAAPPPPPPA---------PATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPA 314
Query: 305 PA 306
PA
Sbjct: 315 PA 316
Score = 40.0 bits (92), Expect = 0.005
Identities = 50/170 (29%), Positives = 61/170 (35%), Gaps = 29/170 (17%)
Query: 141 AEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTAS 200
A A + PP G G A A GP PAPAG + + LA
Sbjct: 120 APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGP-----AKPAGPAALAARAGPGP 174
Query: 201 WGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLS---PSPSACTAVQEP-S 256
G P P PG G+ P G AA S H A P +S P+A + +P +
Sbjct: 175 -GPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAA 233
Query: 257 PGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPA 306
PG TV+Q P PP PA P A P+PA
Sbjct: 234 PG-----------TVIQT----PPFVGAAAPPAPAA----PSPPAAPAPA 264
Score = 30.8 bits (68), Expect = 2.8
Identities = 52/183 (28%), Positives = 57/183 (31%), Gaps = 33/183 (18%)
Query: 134 PGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQA--PGPLPAPA------GDKGDLLLQ 185
PGT A PP P P A A A P P PAPA G
Sbjct: 234 PGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTA 293
Query: 186 AVQQSCLADHLLTASWGADPVPTKAPG--EGQEGLPLTGACAGGEAAAPESPHQAEPYLS 243
A A S GA P P A G G G P GA AAAP +AE
Sbjct: 294 APAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA----AAAPAPGVKAE---- 345
Query: 244 PSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFP 303
S VQ P A + T V+G P ++ P A P
Sbjct: 346 ---SPKRVVQAAPPAAQTLAASGPASTAASMVIG------------PTMQGALPSPAAVP 390
Query: 304 SPA 306
PA
Sbjct: 391 PPA 393
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/176 (30%), Positives = 66/176 (37%), Gaps = 20/176 (11%)
Query: 143 APAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQ-SCLADHLLTASW 201
+P A PPPQ P A LQAP P P + L + Q + LA HLL A +
Sbjct: 387 SPLATPPPQAPP-----ALALPPLQAP-PSPPASPPLSPLATPSPQAPNALAVHLLQAPF 440
Query: 202 GADP-VPTKAPGEGQEGLPLTGAC-----AGGEAAAPESPHQAEPYLSP--SPSACTAVQ 253
P P +AP P++ + A AAP P SP SPSA Q
Sbjct: 441 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQ 500
Query: 254 EPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELP 309
P P A + K + P L PP A+ P Q F A LP
Sbjct: 501 APPPLAAPPLQLAKPPPQAPPALATPPLQALPSPP-----ASFPGQAPFSPSASLP 551
Score = 36.2 bits (82), Expect = 0.067
Identities = 43/142 (30%), Positives = 52/142 (36%), Gaps = 19/142 (13%)
Query: 135 GTDQTEAEAPAAVPPPQGGPP----GPFLA-HTHAGLQAPGPLPA-PAGDKGDLLLQAVQ 188
G T A AP PPP P GP LA H+ + P L +G +G
Sbjct: 600 GPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPP 659
Query: 189 QSCLADHLLTASWGADPVPTKAPGEGQEGLPLT-----------GACAGGEAAAPESPHQ 237
+ LA A+W P P A G G PL G C E PES
Sbjct: 660 DAELAA-CHPAAWSRGPAPPLA-FRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATP 717
Query: 238 AEPYLSPSPSACTAVQEPSPGA 259
A L P PS T+ + + GA
Sbjct: 718 APGALDPGPSPGTSGGKAAAGA 739
Score = 30.0 bits (66), Expect = 4.8
Identities = 39/131 (29%), Positives = 49/131 (37%), Gaps = 36/131 (27%)
Query: 134 PGTDQTEAEAPAAVPPPQGGPP--GPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSC 191
P + +P+A PPPQ PP P L QAP L P LQA+
Sbjct: 483 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPP-------LQALPSP- 534
Query: 192 LADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLS-------P 244
AS+ P +AP LP++ A P P QA P L+ P
Sbjct: 535 ------PASF-----PGQAPFSPSASLPMS------PLATP--PPQAPPVLAAPLLQVPP 575
Query: 245 SPSACTAVQEP 255
SP A +Q P
Sbjct: 576 SPPASPTLQAP 586
Score = 29.6 bits (65), Expect = 6.2
Identities = 37/137 (27%), Positives = 47/137 (34%), Gaps = 14/137 (10%)
Query: 228 EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGP 287
+AA P + P +PSPSA A+Q +P L T + Q P P
Sbjct: 291 DAAPALGPLSSSPLATPSPSA--ALQSQAPPTLPAT-PHSSSLTCQLATPLP-----LAP 342
Query: 288 PDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKV 347
P P + P PSP P + T L H L P L +
Sbjct: 343 PSP---SAPPSLQTLPSPPATPPSQA---TTSLGSPTLQATHSFLPSPPLSPLATPPPQA 396
Query: 348 YWEVGGPPGSASPSTPA 364
+ PP A PS PA
Sbjct: 397 PPALALPPLQAPPSPPA 413
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/176 (30%), Positives = 66/176 (37%), Gaps = 20/176 (11%)
Query: 143 APAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQ-SCLADHLLTASW 201
+P A PPPQ P A LQAP P P + L + Q + LA HLL A +
Sbjct: 348 SPLATPPPQAPP-----ALALPPLQAP-PSPPASPPLSPLATPSPQAPNALAVHLLQAPF 401
Query: 202 GADP-VPTKAPGEGQEGLPLTGAC-----AGGEAAAPESPHQAEPYLSP--SPSACTAVQ 253
P P +AP P++ + A AAP P SP SPSA Q
Sbjct: 402 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQ 461
Query: 254 EPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELP 309
P P A + K + P L PP A+ P Q F A LP
Sbjct: 462 APPPLAAPPLQLAKPPPQAPPALATPPLQALPSPP-----ASFPGQAPFSPSASLP 512
Score = 36.2 bits (82), Expect = 0.067
Identities = 43/142 (30%), Positives = 52/142 (36%), Gaps = 19/142 (13%)
Query: 135 GTDQTEAEAPAAVPPPQGGPP----GPFLA-HTHAGLQAPGPLPA-PAGDKGDLLLQAVQ 188
G T A AP PPP P GP LA H+ + P L +G +G
Sbjct: 561 GPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPP 620
Query: 189 QSCLADHLLTASWGADPVPTKAPGEGQEGLPLT-----------GACAGGEAAAPESPHQ 237
+ LA A+W P P A G G PL G C E PES
Sbjct: 621 DAELAA-CHPAAWSRGPAPPLA-FRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATP 678
Query: 238 AEPYLSPSPSACTAVQEPSPGA 259
A L P PS T+ + + GA
Sbjct: 679 APGALDPGPSPGTSGGKAAAGA 700
Score = 30.0 bits (66), Expect = 4.8
Identities = 39/131 (29%), Positives = 49/131 (37%), Gaps = 36/131 (27%)
Query: 134 PGTDQTEAEAPAAVPPPQGGPP--GPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSC 191
P + +P+A PPPQ PP P L QAP L P LQA+
Sbjct: 444 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPP-------LQALPSP- 495
Query: 192 LADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLS-------P 244
AS+ P +AP LP++ A P P QA P L+ P
Sbjct: 496 ------PASF-----PGQAPFSPSASLPMS------PLATP--PPQAPPVLAAPLLQVPP 536
Query: 245 SPSACTAVQEP 255
SP A +Q P
Sbjct: 537 SPPASPTLQAP 547
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 41.2 bits (95), Expect = 0.002
Identities = 49/178 (27%), Positives = 64/178 (35%), Gaps = 21/178 (11%)
Query: 135 GTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLAD 194
G + A+ P V PP PPG T Q GP PA G + Q A
Sbjct: 337 GLTKPLAQQPGTVKPPVQ-PPGT----TKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKA- 390
Query: 195 HLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQE 254
L G P + PG + G + P P +P P+ T VQ+
Sbjct: 391 --LAQPPGVGKTPAQQPGPAKPPTQQVGT----PKPLAQQPGLQSPAKAPGPTK-TPVQQ 443
Query: 255 PSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQK 312
P PG + G+T Q+ + L GP P PQQ P PA+ P Q+
Sbjct: 444 PGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKP-----PPQQ---PGPAKPPPQQ 493
Score = 33.5 bits (75), Expect = 0.43
Identities = 35/130 (26%), Positives = 44/130 (33%), Gaps = 28/130 (21%)
Query: 134 PGTDQTEAEAPAAVPPP--QGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSC 191
PG +T A+ P PP Q G P P GLQ+P P P VQQ
Sbjct: 395 PGVGKTPAQQPGPAKPPTQQVGTPKPLAQQP--GLQSPAKAPGPT-------KTPVQQP- 444
Query: 192 LADHLLTASWGADPVPTKAPGEGQEGLPLTG------ACAGGEAAAPESPHQAEPYLSPS 245
G +P + G G+ TG G P+ P A+P
Sbjct: 445 ----------GPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQP 494
Query: 246 PSACTAVQEP 255
SA Q+P
Sbjct: 495 GSAKPPSQQP 504
Score = 33.1 bits (74), Expect = 0.56
Identities = 33/119 (27%), Positives = 42/119 (35%), Gaps = 18/119 (15%)
Query: 141 AEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTAS 200
A+ P PPP PP P P PLP P K +L + ++ +A + TA+
Sbjct: 2403 AQPPPPPPPPPPPPPPP-------PPPPPPPLPPPTSPKPTILPK--KKLTVASPVTTAT 2453
Query: 201 WGADPVPTKAPGE--GQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPSP 257
D V T GLP+T C P P S PS P P
Sbjct: 2454 PLFDAVTTLETTAVLRSNGLPVTRICTTAPPPVPPKP-------SSIPSGLVFTHRPEP 2505
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 41.2 bits (95), Expect = 0.002
Identities = 49/178 (27%), Positives = 64/178 (35%), Gaps = 21/178 (11%)
Query: 135 GTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLAD 194
G + A+ P V PP PPG T Q GP PA G + Q A
Sbjct: 337 GLTKPLAQQPGTVKPPVQ-PPGT----TKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKA- 390
Query: 195 HLLTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQE 254
L G P + PG + G + P P +P P+ T VQ+
Sbjct: 391 --LAQPPGVGKTPAQQPGPAKPPTQQVGT----PKPLAQQPGLQSPAKAPGPTK-TPVQQ 443
Query: 255 PSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQK 312
P PG + G+T Q+ + L GP P PQQ P PA+ P Q+
Sbjct: 444 PGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKP-----PPQQ---PGPAKPPPQQ 493
Score = 33.5 bits (75), Expect = 0.43
Identities = 35/130 (26%), Positives = 44/130 (33%), Gaps = 28/130 (21%)
Query: 134 PGTDQTEAEAPAAVPPP--QGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSC 191
PG +T A+ P PP Q G P P GLQ+P P P VQQ
Sbjct: 395 PGVGKTPAQQPGPAKPPTQQVGTPKPLAQQP--GLQSPAKAPGPT-------KTPVQQP- 444
Query: 192 LADHLLTASWGADPVPTKAPGEGQEGLPLTG------ACAGGEAAAPESPHQAEPYLSPS 245
G +P + G G+ TG G P+ P A+P
Sbjct: 445 ----------GPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQP 494
Query: 246 PSACTAVQEP 255
SA Q+P
Sbjct: 495 GSAKPPSQQP 504
Score = 33.1 bits (74), Expect = 0.56
Identities = 33/119 (27%), Positives = 42/119 (35%), Gaps = 18/119 (15%)
Query: 141 AEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTAS 200
A+ P PPP PP P P PLP P K +L + ++ +A + TA+
Sbjct: 2403 AQPPPPPPPPPPPPPPP-------PPPPPPPLPPPTSPKPTILPK--KKLTVASPVTTAT 2453
Query: 201 WGADPVPTKAPGE--GQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPSP 257
D V T GLP+T C P P S PS P P
Sbjct: 2454 PLFDAVTTLETTAVLRSNGLPVTRICTTAPPPVPPKP-------SSIPSGLVFTHRPEP 2505
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 40.8 bits (94), Expect = 0.003
Identities = 45/143 (31%), Positives = 53/143 (37%), Gaps = 31/143 (21%)
Query: 133 GPGTDQTEAEAPAAV-PPPQGGPPGPFLAHTHAGLQAPGP----LPAPAGDKGDLLLQAV 187
G T Q A PA PPPQGGPP P G Q GP P P G + L
Sbjct: 445 GRQTSQQPAGPPAQQRPPPQGGPPQP-----GPGPQRQGPPLQQRPPPQGQQHLSGLGPP 499
Query: 188 QQSCLADHLLTASWGADPVPTKAP------------GEGQEGLPLTGACAGGEAA-APES 234
S L L P PT AP G+G++ P+ G AA P S
Sbjct: 500 AGSPLPQRL--------PSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPAS 551
Query: 235 PHQAEPYLSPSPSACTAVQEPSP 257
P P + T+V P+P
Sbjct: 552 PSPQRQAGPPQATRQTSVSGPAP 574
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 40.8 bits (94), Expect = 0.003
Identities = 45/143 (31%), Positives = 53/143 (37%), Gaps = 31/143 (21%)
Query: 133 GPGTDQTEAEAPAAV-PPPQGGPPGPFLAHTHAGLQAPGP----LPAPAGDKGDLLLQAV 187
G T Q A PA PPPQGGPP P G Q GP P P G + L
Sbjct: 445 GRQTSQQPAGPPAQQRPPPQGGPPQP-----GPGPQRQGPPLQQRPPPQGQQHLSGLGPP 499
Query: 188 QQSCLADHLLTASWGADPVPTKAP------------GEGQEGLPLTGACAGGEAA-APES 234
S L L P PT AP G+G++ P+ G AA P S
Sbjct: 500 AGSPLPQRL--------PSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPAS 551
Query: 235 PHQAEPYLSPSPSACTAVQEPSP 257
P P + T+V P+P
Sbjct: 552 PSPQRQAGPPQATRQTSVSGPAP 574
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 39.7 bits (91), Expect = 0.006
Identities = 48/167 (28%), Positives = 61/167 (36%), Gaps = 21/167 (12%)
Query: 140 EAEAPAAVPPPQGGPPGPFLAHTHAGLQAP-GP--LPAPAGDKGDLLLQAVQQSCLADHL 196
+++A PP GPPGP H GL P GP LP P G KGD +Q H
Sbjct: 263 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGY-------HG 315
Query: 197 LTASWGADPVPTKAPGEGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSACTAVQEPS 256
G +P K +G G+ + G GE P + + E SP + +
Sbjct: 316 RKGERGMPGMPGKHGAKGAPGIAVAG--MKGEPGIPGT--KGEKGAEGSPGLPGLLGQKG 371
Query: 257 PGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFP 303
+ GR G P L GPP P A QV P
Sbjct: 372 EKGDAGNSIGGGR-------GEPGPPGLPGPPGPKGEAGVDGQVGPP 411
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,594,474
Number of Sequences: 37866
Number of extensions: 1610985
Number of successful extensions: 9642
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 393
Number of HSP's that attempted gapping in prelim test: 7976
Number of HSP's gapped (non-prelim): 1901
length of query: 474
length of database: 18,247,518
effective HSP length: 106
effective length of query: 368
effective length of database: 14,233,722
effective search space: 5238009696
effective search space used: 5238009696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.