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Search of human proteins with 47716519
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47716519 claudin 20 [Homo sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47716519 claudin 20 [Homo sapiens] 442 e-124
gi|225703142 claudin 14 [Homo sapiens] 172 2e-43
gi|21536294 claudin 14 [Homo sapiens] 172 2e-43
gi|225703138 claudin 14 [Homo sapiens] 172 2e-43
gi|6912314 claudin 14 [Homo sapiens] 172 2e-43
gi|225703140 claudin 14 [Homo sapiens] 172 2e-43
gi|153792186 claudin 7 [Homo sapiens] 162 3e-40
gi|9966781 claudin 2 [Homo sapiens] 154 6e-38
gi|10863887 claudin 1 [Homo sapiens] 147 9e-36
gi|183979973 claudin 19 isoform a [Homo sapiens] 146 2e-35
gi|183979975 claudin 19 isoform b [Homo sapiens] 146 2e-35
gi|4502877 claudin 4 [Homo sapiens] 137 7e-33
gi|4502875 claudin 3 [Homo sapiens] 135 3e-32
gi|11141861 claudin 9 [Homo sapiens] 134 5e-32
gi|195947374 claudin 5 [Homo sapiens] 133 1e-31
gi|195947372 claudin 5 [Homo sapiens] 133 1e-31
gi|153792768 claudin 6 [Homo sapiens] 132 2e-31
gi|40788011 claudin 8 [Homo sapiens] 123 1e-28
gi|6912316 claudin 17 [Homo sapiens] 113 1e-25
gi|5921465 claudin 10 isoform b [Homo sapiens] 111 5e-25
gi|33598916 claudin 10 isoform a [Homo sapiens] 107 6e-24
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 106 1e-23
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 105 2e-23
gi|7656981 claudin 15 [Homo sapiens] 105 2e-23
gi|231569235 claudin 10 isoform a_i1 [Homo sapiens] 94 1e-19
gi|169166402 PREDICTED: claudin-24-like [Homo sapiens] 83 2e-16
gi|169167239 PREDICTED: claudin-24-like [Homo sapiens] 82 5e-16
gi|169166931 PREDICTED: claudin-24-like [Homo sapiens] 82 5e-16
gi|162417973 claudin 22 [Homo sapiens] 80 2e-15
gi|10938016 claudin 11 [Homo sapiens] 70 2e-12
>gi|47716519 claudin 20 [Homo sapiens]
Length = 219
Score = 442 bits (1136), Expect = e-124
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG
Sbjct: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA
Sbjct: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI
Sbjct: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
Query: 181 FCTSCIKRNPEARLDPPTQQPISNTQLENNSTHNLKDYV 219
FCTSCIKRNPEARLDPPTQQPISNTQLENNSTHNLKDYV
Sbjct: 181 FCTSCIKRNPEARLDPPTQQPISNTQLENNSTHNLKDYV 219
>gi|225703142 claudin 14 [Homo sapiens]
Length = 239
Score = 172 bits (437), Expect = 2e-43
Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 3/211 (1%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MAS +QLL F+L+ G+ G L T+LP+W+ V +NI+TA+ L GLWM+C W+STG
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
++ C + S+L+LP +QAARA MV++C+LS + + +GMKCTR K+ +
Sbjct: 61 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GG F+ AG+ +++ W T +++ NF + +P K E G A+Y+GFIS+ L I G +
Sbjct: 121 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL 180
Query: 181 FCTSCIKRNPEARLDPPTQQPISNTQLENNS 211
C SC EA P P + T N +
Sbjct: 181 LCLSC---QDEAPYRPYQAPPRATTTTANTA 208
>gi|21536294 claudin 14 [Homo sapiens]
Length = 239
Score = 172 bits (437), Expect = 2e-43
Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 3/211 (1%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MAS +QLL F+L+ G+ G L T+LP+W+ V +NI+TA+ L GLWM+C W+STG
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
++ C + S+L+LP +QAARA MV++C+LS + + +GMKCTR K+ +
Sbjct: 61 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GG F+ AG+ +++ W T +++ NF + +P K E G A+Y+GFIS+ L I G +
Sbjct: 121 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL 180
Query: 181 FCTSCIKRNPEARLDPPTQQPISNTQLENNS 211
C SC EA P P + T N +
Sbjct: 181 LCLSC---QDEAPYRPYQAPPRATTTTANTA 208
>gi|225703138 claudin 14 [Homo sapiens]
Length = 239
Score = 172 bits (437), Expect = 2e-43
Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 3/211 (1%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MAS +QLL F+L+ G+ G L T+LP+W+ V +NI+TA+ L GLWM+C W+STG
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
++ C + S+L+LP +QAARA MV++C+LS + + +GMKCTR K+ +
Sbjct: 61 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GG F+ AG+ +++ W T +++ NF + +P K E G A+Y+GFIS+ L I G +
Sbjct: 121 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL 180
Query: 181 FCTSCIKRNPEARLDPPTQQPISNTQLENNS 211
C SC EA P P + T N +
Sbjct: 181 LCLSC---QDEAPYRPYQAPPRATTTTANTA 208
>gi|6912314 claudin 14 [Homo sapiens]
Length = 239
Score = 172 bits (437), Expect = 2e-43
Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 3/211 (1%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MAS +QLL F+L+ G+ G L T+LP+W+ V +NI+TA+ L GLWM+C W+STG
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
++ C + S+L+LP +QAARA MV++C+LS + + +GMKCTR K+ +
Sbjct: 61 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GG F+ AG+ +++ W T +++ NF + +P K E G A+Y+GFIS+ L I G +
Sbjct: 121 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL 180
Query: 181 FCTSCIKRNPEARLDPPTQQPISNTQLENNS 211
C SC EA P P + T N +
Sbjct: 181 LCLSC---QDEAPYRPYQAPPRATTTTANTA 208
>gi|225703140 claudin 14 [Homo sapiens]
Length = 239
Score = 172 bits (437), Expect = 2e-43
Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 3/211 (1%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MAS +QLL F+L+ G+ G L T+LP+W+ V +NI+TA+ L GLWM+C W+STG
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
++ C + S+L+LP +QAARA MV++C+LS + + +GMKCTR K+ +
Sbjct: 61 IYQCQIYRSLLALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAIL 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GG F+ AG+ +++ W T +++ NF + +P K E G A+Y+GFIS+ L I G +
Sbjct: 121 GGTLFILAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL 180
Query: 181 FCTSCIKRNPEARLDPPTQQPISNTQLENNS 211
C SC EA P P + T N +
Sbjct: 181 LCLSC---QDEAPYRPYQAPPRATTTTANTA 208
>gi|153792186 claudin 7 [Homo sapiens]
Length = 211
Score = 162 bits (409), Expect = 3e-40
Identities = 83/209 (39%), Positives = 126/209 (60%), Gaps = 1/209 (0%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MA++GLQLL F +AL G G++ T +P W+++ NIITA GLWMDC STG
Sbjct: 1 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGG-DRETKSHASF 119
M SC + S+L+L +QA RA MV++ VL L + +T+GMKCTR GG D+ K+ +
Sbjct: 61 MMSCKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAM 120
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGM 179
GG+ F+ AG+++L++ WY +I+ +F + +P + K+E G AI+IG+ + L+ + G
Sbjct: 121 GGGIIFIVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGA 180
Query: 180 IFCTSCIKRNPEARLDPPTQQPISNTQLE 208
+ SC +A P P SN+ E
Sbjct: 181 LLSCSCPGNESKAGYRVPRSYPKSNSSKE 209
>gi|9966781 claudin 2 [Homo sapiens]
Length = 230
Score = 154 bits (389), Expect = 6e-38
Identities = 82/204 (40%), Positives = 119/204 (58%), Gaps = 1/204 (0%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MAS GLQL+ +IL L G+ G L A LLP+WK + V ++I+TA+ GLWM+C +STG
Sbjct: 1 MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
+ C + ++L LP +QAA+A MV + +S+L S VGM+CT + K + A
Sbjct: 61 ITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVA 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GGV F+ G+ I W I+ +F VP+S K E G A+Y+G IS++ I+G+I
Sbjct: 121 GGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGII 180
Query: 181 FCTSC-IKRNPEARLDPPTQQPIS 203
C SC +RN D QP++
Sbjct: 181 LCFSCSSQRNRSNYYDAYQAQPLA 204
>gi|10863887 claudin 1 [Homo sapiens]
Length = 211
Score = 147 bits (370), Expect = 9e-36
Identities = 78/202 (38%), Positives = 110/202 (54%), Gaps = 5/202 (2%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MA+AGLQLL FILA G G + +T LP W++ NI+TA GLWM C STG
Sbjct: 1 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTR-LGGDRETKSHASF 119
C + S+L+L +QA RA MV+ +L + I +TVGMKC + L D K +
Sbjct: 61 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV 120
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGM 179
GG F+ AG++ L++T WY I+ F D P + ++E G A++ G+ +A L + G
Sbjct: 121 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA 180
Query: 180 IFCTSCIKRNPEARLDPPTQQP 201
+ C SC P PT +P
Sbjct: 181 LLCCSC----PRKTTSYPTPRP 198
>gi|183979973 claudin 19 isoform a [Homo sapiens]
Length = 224
Score = 146 bits (368), Expect = 2e-35
Identities = 78/202 (38%), Positives = 113/202 (55%), Gaps = 5/202 (2%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MA++GLQLL + LAL G G++ +T LP WK + IITA+ GLWM C STG
Sbjct: 1 MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRE-TKSHASF 119
C L S+L+L H+Q+ARA MV+A +L + + S VGMKCTR+G K +
Sbjct: 61 QVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAI 120
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGM 179
AGG F+ AG+ +L + WY + F + + P + ++E G A+++G+ SA L + G
Sbjct: 121 AGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGGS 180
Query: 180 IFCTSCIKRNPEARLDPPTQQP 201
C +C PE + QP
Sbjct: 181 FLCCTC----PEPERPNSSPQP 198
>gi|183979975 claudin 19 isoform b [Homo sapiens]
Length = 211
Score = 146 bits (368), Expect = 2e-35
Identities = 78/202 (38%), Positives = 113/202 (55%), Gaps = 5/202 (2%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MA++GLQLL + LAL G G++ +T LP WK + IITA+ GLWM C STG
Sbjct: 1 MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRE-TKSHASF 119
C L S+L+L H+Q+ARA MV+A +L + + S VGMKCTR+G K +
Sbjct: 61 QVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAI 120
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGM 179
AGG F+ AG+ +L + WY + F + + P + ++E G A+++G+ SA L + G
Sbjct: 121 AGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGGS 180
Query: 180 IFCTSCIKRNPEARLDPPTQQP 201
C +C PE + QP
Sbjct: 181 FLCCTC----PEPERPNSSPQP 198
>gi|4502877 claudin 4 [Homo sapiens]
Length = 209
Score = 137 bits (345), Expect = 7e-33
Identities = 68/188 (36%), Positives = 105/188 (55%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MAS GLQ++ LA+ G V+ LP W+V + SNI+T+ GLWM+C STG
Sbjct: 1 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
C + S+L+LP +QAARA ++++ +++ALG+ S VG KCT D K+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIV 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GV F+ AG+ ++ W II +F + V K E G ++Y+G+ ++ LL + G +
Sbjct: 121 AGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGL 180
Query: 181 FCTSCIKR 188
C +C R
Sbjct: 181 LCCNCPPR 188
>gi|4502875 claudin 3 [Homo sapiens]
Length = 220
Score = 135 bits (340), Expect = 3e-32
Identities = 69/186 (37%), Positives = 104/186 (55%)
Query: 3 SAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTGMF 62
S GL++ LA+ G G + LP W+V+ + SNIIT+ GLWM+C STG
Sbjct: 2 SMGLEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTGQM 61
Query: 63 SCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFAGG 122
C + S+L+LP +QAARA +V+A +L+A G+ + VG +CT D K+ + G
Sbjct: 62 QCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAG 121
Query: 123 VCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMIFC 182
V F+ A + +L+ W II +F + VPE+ K E G +Y+G+ +A L + G + C
Sbjct: 122 VLFLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGALLC 181
Query: 183 TSCIKR 188
SC R
Sbjct: 182 CSCPPR 187
>gi|11141861 claudin 9 [Homo sapiens]
Length = 217
Score = 134 bits (338), Expect = 5e-32
Identities = 72/185 (38%), Positives = 102/185 (55%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MAS GL+LL LA+ G G L + LP WKV + ++I+ A V GLWM C STG
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
C + S+L+LP +QAARA V+A +L+ LG+ + G +CT D K+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GV + AGI LI W II +F + V E+ K E G ++Y+G+ +A LL + G +
Sbjct: 121 AGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGL 180
Query: 181 FCTSC 185
C +C
Sbjct: 181 LCCTC 185
>gi|195947374 claudin 5 [Homo sapiens]
Length = 303
Score = 133 bits (335), Expect = 1e-31
Identities = 66/182 (36%), Positives = 100/182 (54%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
M SA L++L +L L G G++ A LP W+V +D NI+TA GLWM C STG
Sbjct: 86 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 145
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
C + S+L+L VQAARA V A +L+ + + + G +CT K+ +
Sbjct: 146 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT 205
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GGV ++ G+ +L+ W+ ++ F D +VP S K+E G A+YIG+ + LL + G +
Sbjct: 206 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL 265
Query: 181 FC 182
C
Sbjct: 266 LC 267
>gi|195947372 claudin 5 [Homo sapiens]
Length = 303
Score = 133 bits (335), Expect = 1e-31
Identities = 66/182 (36%), Positives = 100/182 (54%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
M SA L++L +L L G G++ A LP W+V +D NI+TA GLWM C STG
Sbjct: 86 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 145
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
C + S+L+L VQAARA V A +L+ + + + G +CT K+ +
Sbjct: 146 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT 205
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
GGV ++ G+ +L+ W+ ++ F D +VP S K+E G A+YIG+ + LL + G +
Sbjct: 206 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL 265
Query: 181 FC 182
C
Sbjct: 266 LC 267
>gi|153792768 claudin 6 [Homo sapiens]
Length = 220
Score = 132 bits (333), Expect = 2e-31
Identities = 66/185 (35%), Positives = 105/185 (56%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MASAG+Q+L +L L G L + LP WKV + ++I+ A V GLWM C STG
Sbjct: 1 MASAGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFA 120
C + S+L+LP +QAARA V+A +++ G+ G KCT ++++K+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVEEKDSKARLVLT 120
Query: 121 GGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMI 180
G+ F+ +G+ +LI W II +F + V E+ K E G ++Y+G+ ++ LL + G +
Sbjct: 121 SGIVFVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 181 FCTSC 185
C +C
Sbjct: 181 LCCTC 185
>gi|40788011 claudin 8 [Homo sapiens]
Length = 225
Score = 123 bits (308), Expect = 1e-28
Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 6/225 (2%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MA+ L++ L G+ G + T++P W+V+ +++NI+ GLWM+C +
Sbjct: 1 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRE-TKSHASF 119
C + S+L+L +QAAR M A V+S L + +GMKCTR GD E K+H
Sbjct: 61 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL 120
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGM 179
G+ F+ G+ LI W II +F + V + K E G A+Y+G+ +A++L + G
Sbjct: 121 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGA 180
Query: 180 IFCT--SCIKRNPEARLDPP---TQQPISNTQLENNSTHNLKDYV 219
+FC C +++ R P T Q +T ++ S ++ YV
Sbjct: 181 LFCCVFCCNEKSSSYRYSIPSHRTTQKSYHTGKKSPSVYSRSQYV 225
>gi|6912316 claudin 17 [Homo sapiens]
Length = 224
Score = 113 bits (283), Expect = 1e-25
Identities = 72/216 (33%), Positives = 103/216 (47%), Gaps = 6/216 (2%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MA LQ+ +L G+ G L TLLP W+V+ V SNII GLWM+C +
Sbjct: 1 MAFYPLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARV 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMK---CTRLGGDRETKSHA 117
C S+L+LP ++ ARA M +A LS + + GMK CT G + K++
Sbjct: 61 RLQCKFYSSLLALPPALETARALMCVAVALSLIALLIGICGMKQVQCT--GSNERAKAYL 118
Query: 118 SFAGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFIS 177
GV F+ GI LI W II +F + + K E G A+++G+ SA +LFI
Sbjct: 119 LGTSGVLFILTGIFVLIPVSWTANIIIRDFYNPAIHIGQKRELGAALFLGWASAAVLFIG 178
Query: 178 GMIFC-TSCIKRNPEARLDPPTQQPISNTQLENNST 212
G + C C R + P + +T N+T
Sbjct: 179 GGLLCGFCCCNRKKQGYRYPVPGYRVPHTDKRRNTT 214
>gi|5921465 claudin 10 isoform b [Homo sapiens]
Length = 228
Score = 111 bits (277), Expect = 5e-25
Identities = 67/195 (34%), Positives = 103/195 (52%), Gaps = 6/195 (3%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPN--WKVNVDVDSNIITAIVQLHGLWMDCTWYS 58
MAS +++AF++++SG VL ++ LP WKV+ +D +IT LW C S
Sbjct: 1 MASTASEIIAFMVSISG--WVLVSSTLPTDYWKVST-IDGTVITTATYWANLWKACVTDS 57
Query: 59 TGMFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHAS 118
TG+ +C S+L+L ++QA R M+ A L G + GMKCT++GG + K+ +
Sbjct: 58 TGVSNCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIA 117
Query: 119 FAGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISG 178
G+ F+ +G+ S+ Y +I F D E K+E G A++IG+ A L I G
Sbjct: 118 CLAGIVFILSGLCSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGG 176
Query: 179 MIFCTSCIKRNPEAR 193
+IFC S N R
Sbjct: 177 VIFCFSISDNNKTPR 191
>gi|33598916 claudin 10 isoform a [Homo sapiens]
Length = 226
Score = 107 bits (268), Expect = 6e-24
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 2/187 (1%)
Query: 7 QLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTGMFSCAL 66
Q+ A + + G ++ AT WKV S++ITA GLWM+C + G F C
Sbjct: 5 QIWALVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRP 63
Query: 67 KHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFAGGVCFM 126
+I + ++QA R M+ A L G + GMKCT++GG + K+ + G+ F+
Sbjct: 64 HFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI 123
Query: 127 SAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMIFCTSCI 186
+G+ S+ Y +I F D E K+E G A++IG+ A L I G+IFC S
Sbjct: 124 LSGLCSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSIS 182
Query: 187 KRNPEAR 193
N R
Sbjct: 183 DNNKTPR 189
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 106 bits (265), Expect = 1e-23
Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 13/203 (6%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
MA Q L F+++L G++G++ AT + W D+ +N +TA+ GLW C S+G
Sbjct: 1 MAVTACQGLGFVVSLIGIAGIIAATCMDQWSTQ-DLYNNPVTAVFNYQGLWRSCVRESSG 59
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGG-DRETKSHASF 119
C ++L LP +QA RA M++ VL A+G+ S +KC R+G + K++ +
Sbjct: 60 FTECRGYFTLLGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTL 119
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTV-----------PESNKHEPGGAIYIGF 168
G+ F+ +G+ ++ + ++ NF T ++ G A+++G+
Sbjct: 120 TSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGW 179
Query: 169 ISAMLLFISGMIFCTSCIKRNPE 191
++ L I G++ C +C PE
Sbjct: 180 VAGGLTLIGGVMMCIACRGLAPE 202
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 105 bits (263), Expect = 2e-23
Identities = 56/203 (27%), Positives = 104/203 (51%), Gaps = 13/203 (6%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
M++ Q++AF+L++ G++G + AT + W D+ N +T++ Q GLW C S+G
Sbjct: 1 MSTTTCQVVAFLLSILGLAGCIAATGMDMWSTQ-DLYDNPVTSVFQYEGLWRSCVRQSSG 59
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGG-DRETKSHASF 119
C +IL LP +QA RA M++ VL A+G+ S +KC R+G + K++ +
Sbjct: 60 FTECRPYFTILGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTL 119
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTV-----------PESNKHEPGGAIYIGF 168
G+ F+ +G+ ++ + ++ NF T ++ G A+++G+
Sbjct: 120 TSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGW 179
Query: 169 ISAMLLFISGMIFCTSCIKRNPE 191
++ L I G++ C +C PE
Sbjct: 180 VAGGLTLIGGVMMCIACRGLAPE 202
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 105 bits (263), Expect = 2e-23
Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 10/207 (4%)
Query: 3 SAGLQLLAFILALSGVSGVLTATLLPN--WKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
S ++ F +A G+ ++ LPN W+V+ V N+IT LW C S G
Sbjct: 2 SMAVETFGFFMATVGL--LMLGVTLPNSYWRVST-VHGNVITTNTIFENLWFSCATDSLG 58
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGG-DRETKSHASF 119
+++C S+L+L ++QA RA M+ A +L LG+ G++CT +GG + K+ +
Sbjct: 59 VYNCWEFPSMLALSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAA 118
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGM 179
G + AGI +++ WY I +F D P K+E G A+Y+G+ ++++ + G+
Sbjct: 119 TAGALHILAGICGMVAISWYAFNITRDFFDPLYP-GTKYELGPALYLGWSASLISILGGL 177
Query: 180 IFCTSCI---KRNPEARLDPPTQQPIS 203
C++C +P A P Q P+S
Sbjct: 178 CLCSACCCGSDEDPAASARRPYQAPVS 204
>gi|231569235 claudin 10 isoform a_i1 [Homo sapiens]
Length = 207
Score = 93.6 bits (231), Expect = 1e-19
Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 7 QLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTGMFSCAL 66
Q+ A + + G ++ AT WKV S++ITA GLWM+C Y
Sbjct: 5 QIWALVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGY--------- 54
Query: 67 KHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFAGGVCFM 126
+QA R M+ A L G + GMKCT++GG + K+ + G+ F+
Sbjct: 55 ----------IQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI 104
Query: 127 SAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMIFCTSCI 186
+G+ S+ Y +I F D E K+E G A++IG+ A L I G+IFC S
Sbjct: 105 LSGLCSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSIS 163
Query: 187 KRNPEAR 193
N R
Sbjct: 164 DNNKTPR 170
>gi|169166402 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 82.8 bits (203), Expect = 2e-16
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 6/190 (3%)
Query: 6 LQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTGMFSCA 65
+Q + +L+L G + T LP+WK N+++D N + GLW C C
Sbjct: 9 MQSVGLLLSLLGWILSIITTYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEVGMQCK 65
Query: 66 LKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLG-GDRETKSHASFAGGVC 124
S L+LP ++ +R M L+ L LG+ S G+ C R+G R+ K GG+
Sbjct: 66 DFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLILGGIL 125
Query: 125 FMSAGISSLISTVWYTKEIIANFLDLTVPE-SNKHEPGGAIYIGFISAMLLFISG-MIFC 182
++GI++L+ W + + F D VP+ + E G A+++G+ + + L + G ++ C
Sbjct: 126 SWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGGCLLNC 185
Query: 183 TSCIKRNPEA 192
+C P A
Sbjct: 186 AACSSHAPLA 195
>gi|169167239 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 81.6 bits (200), Expect = 5e-16
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
M S GL LL+F L + ++T T LP+WK N+++D N + GLW C
Sbjct: 9 MQSVGL-LLSF---LGWILSIIT-TYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEV 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLG-GDRETKSHASF 119
C S L+LP ++ +R M L+ L LG+ S G+ C R+G R+ K
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPE-SNKHEPGGAIYIGFISAMLLFISG 178
GG+ ++GI++L+ W + + F D VP+ + E G A+++G+ + + L + G
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 179 -MIFCTSCIKRNPEA 192
++ C +C P A
Sbjct: 181 CLLNCAACSSHAPLA 195
>gi|169166931 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 81.6 bits (200), Expect = 5e-16
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
M S GL LL+F L + ++T T LP+WK N+++D N + GLW C
Sbjct: 9 MQSVGL-LLSF---LGWILSIIT-TYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEV 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLG-GDRETKSHASF 119
C S L+LP ++ +R M L+ L LG+ S G+ C R+G R+ K
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPE-SNKHEPGGAIYIGFISAMLLFISG 178
GG+ ++GI++L+ W + + F D VP+ + E G A+++G+ + + L + G
Sbjct: 121 LGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 179 -MIFCTSCIKRNPEA 192
++ C +C P A
Sbjct: 181 CLLNCAACSSHAPLA 195
>gi|162417973 claudin 22 [Homo sapiens]
Length = 220
Score = 79.7 bits (195), Expect = 2e-15
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 13/195 (6%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTG 60
+A L LL ++L+ LP+WK N+++D N + GLW C
Sbjct: 11 LAGVSLSLLGWVLSC-------LTNYLPHWK-NLNLDLNEMENWTM--GLWQTCVIQEEV 60
Query: 61 MFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLG-GDRETKSHASF 119
C S L+LP ++ +R M L+ L LG+ S G+ C R+G R+ K
Sbjct: 61 GMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIGESQRDLKRRLLI 120
Query: 120 AGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPE-SNKHEPGGAIYIGFISAMLLFISG 178
GG+ ++G+++L+ W + + F D VP+ + E G A+++G+ + + L + G
Sbjct: 121 LGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFVPRWEFGEALFLGWFAGLSLLLGG 180
Query: 179 -MIFCTSCIKRNPEA 192
++ C +C P A
Sbjct: 181 CLLHCAACSSHAPLA 195
>gi|10938016 claudin 11 [Homo sapiens]
Length = 207
Score = 69.7 bits (169), Expect = 2e-12
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 1 MASAGLQLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQL--HGLWMDCTWYS 58
M + LQ++ F+ + G GV+ T +W V + +L GLW DC +
Sbjct: 1 MVATCLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVM-A 59
Query: 59 TGMFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGD-RETKSHA 117
TG++ C IL LP +VQA RA M+ A VL I + C R+G + K
Sbjct: 60 TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRR 119
Query: 118 SFAGGVCFMSAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFIS 177
+ GV + + +L++T+W+ + + T+ G ++Y G+I A+L +
Sbjct: 120 AQLAGVLLILLALCALVATIWFP---VCAHRETTIVSF-----GYSLYAGWIGAVLCLVG 171
Query: 178 GMI 180
G +
Sbjct: 172 GCV 174
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,900,962
Number of Sequences: 37866
Number of extensions: 309625
Number of successful extensions: 787
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 47
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.