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Search of human proteins with 4759302
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759302 VAMP-associated protein B/C [Homo sapiens]
(243 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759302 VAMP-associated protein B/C [Homo sapiens] 480 e-136
gi|94721252 vesicle-associated membrane protein-associated prote... 300 6e-82
gi|94721250 vesicle-associated membrane protein-associated prote... 280 1e-75
gi|22749197 motile sperm domain containing 2 [Homo sapiens] 62 3e-10
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 34 0.10
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 34 0.10
gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens] 34 0.13
gi|7662126 signal-induced proliferation-associated 1 like 1 [Hom... 33 0.17
gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo sa... 33 0.17
gi|109240552 RUN and FYVE domain-containing 2 isoform b [Homo sa... 33 0.17
gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens] 33 0.29
gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens] 33 0.29
gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens] 33 0.29
gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo ... 32 0.50
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 32 0.65
gi|112421013 signal-induced proliferation-associated 1 like 2 [H... 32 0.65
gi|239756284 PREDICTED: similar to GOLGA8B protein, partial [Hom... 31 0.85
gi|166064038 PAK-interacting exchange factor beta isoform a [Hom... 31 0.85
gi|4505573 PAK-interacting exchange factor beta isoform a [Homo ... 31 0.85
gi|28372503 keratin 72 isoform 1 [Homo sapiens] 31 1.1
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 31 1.1
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 31 1.1
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 31 1.1
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 31 1.1
gi|226246665 keratin 72 isoform 2 [Homo sapiens] 31 1.1
gi|226246663 keratin 72 isoform 1 [Homo sapiens] 31 1.1
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 31 1.1
gi|199559785 pseudouridylate synthase 3 [Homo sapiens] 31 1.1
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 31 1.1
gi|18141299 zinc finger and BTB domain containing 26 [Homo sapiens] 31 1.1
>gi|4759302 VAMP-associated protein B/C [Homo sapiens]
Length = 243
Score = 480 bits (1235), Expect = e-136
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI 60
MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
Sbjct: 1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI 60
Query: 61 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR 120
IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
Sbjct: 61 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR 120
Query: 121 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV 180
CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV
Sbjct: 121 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV 180
Query: 181 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGK 240
QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGK
Sbjct: 181 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGK 240
Query: 241 IAL 243
IAL
Sbjct: 241 IAL 243
>gi|94721252 vesicle-associated membrane protein-associated protein
A isoform 2 [Homo sapiens]
Length = 249
Score = 300 bits (769), Expect = 6e-82
Identities = 154/244 (63%), Positives = 190/244 (77%), Gaps = 3/244 (1%)
Query: 1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI 60
MAK EQ+L L+P +LKF+GPFTDVVTTNLKL NP+DR VCFKVKTTAPRRYCVRPNSGI
Sbjct: 8 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI 67
Query: 61 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR 120
ID G+++ VSVMLQPFDYDPNEKSKHKFMVQ++FAP +TSDMEAVWKEAKP++LMDSKLR
Sbjct: 68 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR 127
Query: 121 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV 180
CVFE+P ENDK +D+E +K + ASK + P + K S SL+DTE +K+MEECKRLQGE+
Sbjct: 128 CVFEMPNENDKLNDMEPSKAVPLNASKQDGP-MPKPHSVSLNDTETRKLMEECKRLQGEM 186
Query: 181 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFI-VGVIIG 239
+L EEN+ ++E GLR+RK S+ P S + ++ S LVV+ I +G +G
Sbjct: 187 MKLSEENRHLRDE-GLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFLG 245
Query: 240 KIAL 243
K L
Sbjct: 246 KFIL 249
>gi|94721250 vesicle-associated membrane protein-associated protein
A isoform 1 [Homo sapiens]
Length = 294
Score = 280 bits (715), Expect = 1e-75
Identities = 154/289 (53%), Positives = 190/289 (65%), Gaps = 48/289 (16%)
Query: 1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI 60
MAK EQ+L L+P +LKF+GPFTDVVTTNLKL NP+DR VCFKVKTTAPRRYCVRPNSGI
Sbjct: 8 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI 67
Query: 61 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR 120
ID G+++ VSVMLQPFDYDPNEKSKHKFMVQ++FAP +TSDMEAVWKEAKP++LMDSKLR
Sbjct: 68 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR 127
Query: 121 CVFELPAENDK---------------------------------------------PHDV 135
CVFE+P ENDK +D+
Sbjct: 128 CVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPRGLSVLKQEKQKNDM 187
Query: 136 EINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDG 195
E +K + ASK + P + K S SL+DTE +K+MEECKRLQGE+ +L EEN+ ++E G
Sbjct: 188 EPSKAVPLNASKQDGP-MPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRHLRDE-G 245
Query: 196 LRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFI-VGVIIGKIAL 243
LR+RK S+ P S + ++ S LVV+ I +G +GK L
Sbjct: 246 LRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFLGKFIL 294
>gi|22749197 motile sperm domain containing 2 [Homo sapiens]
Length = 518
Score = 62.4 bits (150), Expect = 3e-10
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 7 VLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGAS 66
+L + P EL F + T + L N T V FKV+TTAP +Y V+P++ D GAS
Sbjct: 327 LLHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 386
Query: 67 INVSVMLQPFDYDPNEKSKHKFMVQS----MFAPTDTSDMEAVWKEAKPEDLMDSKLRCV 122
+++ V ++ +F++ + + T +++ WKE +M+ +LRC
Sbjct: 387 VDIVVSPHG---GLTVSAQDRFLIMAAEMEQSSGTGPAELTQFWKEVPRNKVMEHRLRC- 442
Query: 123 FELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQR 182
E+ KP+ + + + KT I ++ +++E ++L+ +VQR
Sbjct: 443 --HTVESSKPNTLTLKDNAFNMSDKTSEDIC----------LQLSRLLESNRKLEDQVQR 490
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 34.3 bits (77), Expect = 0.10
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 71 VMLQPFDYDPNEKSKH-----KFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVFEL 125
++L DP+ K +H + ++ M T EA K A+ E +DS+L EL
Sbjct: 432 IVLHKNGADPDFKCRHLQIEIEGLIDQMIDKTKVEKSEA--KAAELEKKLDSELTARHEL 489
Query: 126 PAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLRE 185
E K K+ K + +++ D E E +L GEV +L +
Sbjct: 490 QVEMKKMESDFEQKLQDLQGEKDALHSEKQQIATEKQDLEA-----EVSQLTGEVAKLTK 544
Query: 186 ENKQFKEE------DGLRMRKTVQSNSPISALAPTGKEEG 219
E + K+E + + +V S +P+ P + G
Sbjct: 545 ELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSG 584
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 34.3 bits (77), Expect = 0.10
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 71 VMLQPFDYDPNEKSKH-----KFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVFEL 125
++L DP+ K +H + ++ M T EA K A+ E +DS+L EL
Sbjct: 441 IVLHKNGADPDFKCRHLQIEIEGLIDQMIDKTKVEKSEA--KAAELEKKLDSELTARHEL 498
Query: 126 PAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLRE 185
E K K+ K + +++ D E E +L GEV +L +
Sbjct: 499 QVEMKKMESDFEQKLQDLQGEKDALHSEKQQIATEKQDLEA-----EVSQLTGEVAKLTK 553
Query: 186 ENKQFKEE------DGLRMRKTVQSNSPISALAPTGKEEG 219
E + K+E + + +V S +P+ P + G
Sbjct: 554 ELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSG 593
>gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]
Length = 1233
Score = 33.9 bits (76), Expect = 0.13
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 77 DYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPED--------LMDSKLRCVFELPAE 128
+YD +K K + F ++ A KEAK E L D +R +L
Sbjct: 167 EYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLF 226
Query: 129 NDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENK 188
++VEI K+ ASK + K ++D E+K+ +E ++ E Q++ +E K
Sbjct: 227 KLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVED-ELKEKKKELGKMMREQQQIEKEIK 285
Query: 189 QFKEE 193
+ E
Sbjct: 286 EKDSE 290
>gi|7662126 signal-induced proliferation-associated 1 like 1 [Homo
sapiens]
Length = 1804
Score = 33.5 bits (75), Expect = 0.17
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 127 AENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTE---------VKKVMEECKRLQ 177
+ +D+ D + ++ ++SK +P +L+S +D E +KK E+ LQ
Sbjct: 1711 SNSDQLEDQALAQMKPYSSSKDSSP----TLASKVDQLEGMLKMLREDLKKEKEDKAHLQ 1766
Query: 178 GEVQRLREENKQFKEE 193
EVQ LRE+N + +EE
Sbjct: 1767 AEVQHLREDNLRLQEE 1782
>gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo
sapiens]
Length = 641
Score = 33.5 bits (75), Expect = 0.17
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 110 KPEDLMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKV 169
K E+ + +K R V + K + E+N+ +++T S + + S S++ K+
Sbjct: 220 KNEEDIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNT-------KL 272
Query: 170 MEECKRLQGEVQRLREENKQFKEEDGLRMRKTVQ 203
+EE + + +L+EEN Q + E+ L + KT Q
Sbjct: 273 IEELAIAKNNIIKLQEENHQLRSENKLILMKTQQ 306
>gi|109240552 RUN and FYVE domain-containing 2 isoform b [Homo
sapiens]
Length = 403
Score = 33.5 bits (75), Expect = 0.17
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 110 KPEDLMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKV 169
K E+ + +K R V + K + E+N+ +++T S + + S S++ K+
Sbjct: 151 KNEEDIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNT-------KL 203
Query: 170 MEECKRLQGEVQRLREENKQFKEEDGLRMRKTVQ 203
+EE + + +L+EEN Q + E+ L + KT Q
Sbjct: 204 IEELAIAKNNIIKLQEENHQLRSENKLILMKTQQ 237
>gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 0.29
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 149 ETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLRMRK 200
E +S+SL ++ EV+K +EE K Q E QRL+++ ++ EDG + K
Sbjct: 101 EAERLSESLKLRYEEAEVRKKLEE-KDRQEEAQRLQQKRQETGREDGGTLAK 151
>gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 0.29
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 149 ETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLRMRK 200
E +S+SL ++ EV+K +EE K Q E QRL+++ ++ EDG + K
Sbjct: 101 EAERLSESLKLRYEEAEVRKKLEE-KDRQEEAQRLQQKRQETGREDGGTLAK 151
>gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 0.29
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 149 ETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLRMRK 200
E +S+SL ++ EV+K +EE K Q E QRL+++ ++ EDG + K
Sbjct: 101 EAERLSESLKLRYEEAEVRKKLEE-KDRQEEAQRLQQKRQETGREDGGTLAK 151
>gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo
sapiens]
Length = 956
Score = 32.0 bits (71), Expect = 0.50
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 153 VSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLRMRK 200
+ K L + E +K+ EE KR + E ++ +EE K+ KE++ R+
Sbjct: 344 LGKQLKLRAEREEKEKLKEEAKRAKEEAKKKKEEEKELKEKERREKRE 391
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 31.6 bits (70), Expect = 0.65
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 108 EAKPEDLMDSKLRCVFELPAENDK--------PHDVEINKIISTTASKTETPIVSKSLSS 159
+ KPED + K + E+ + DK P E+ K + K E K +
Sbjct: 643 KVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKK 702
Query: 160 SLDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLRMRKTVQSNSPIS 209
EVKK ++ + E + +++E K+ K+E + +S++P+S
Sbjct: 703 ETPPKEVKKEVK-----KEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLS 747
>gi|112421013 signal-induced proliferation-associated 1 like 2 [Homo
sapiens]
Length = 1722
Score = 31.6 bits (70), Expect = 0.65
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 139 KIISTTASKTETPIVSKSLSSSLD----DTEVKKVMEECKRLQGEVQRLREENKQFKEE 193
+ + TT ++ +P+ K L T+++K ++ LQ EVQ LR++N + +EE
Sbjct: 1641 EFMDTTGERSPSPLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNMRLQEE 1699
>gi|239756284 PREDICTED: similar to GOLGA8B protein, partial [Homo
sapiens]
Length = 314
Score = 31.2 bits (69), Expect = 0.85
Identities = 15/69 (21%), Positives = 38/69 (55%)
Query: 124 ELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRL 183
+ PA + + ++ K + A + + + + S L+ + +++ E+ +RLQ + +RL
Sbjct: 2 DAPAVSSEVELQDLRKELERVAGELQAQVENNQCISLLNRGQKERLREQEERLQEQQERL 61
Query: 184 REENKQFKE 192
RE+ K+ ++
Sbjct: 62 REQEKRLQQ 70
>gi|166064038 PAK-interacting exchange factor beta isoform a [Homo
sapiens]
Length = 646
Score = 31.2 bits (69), Expect = 0.85
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 149 ETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKE--EDGLRMRKTVQ 203
E IV ++ S+ E K +++ L+ EVQ LR++NK+ K+ E+ R RK ++
Sbjct: 570 EKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLE 626
>gi|4505573 PAK-interacting exchange factor beta isoform a [Homo
sapiens]
Length = 646
Score = 31.2 bits (69), Expect = 0.85
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 149 ETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKE--EDGLRMRKTVQ 203
E IV ++ S+ E K +++ L+ EVQ LR++NK+ K+ E+ R RK ++
Sbjct: 570 EKIIVEETKSNGQTVIEEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLE 626
>gi|28372503 keratin 72 isoform 1 [Homo sapiens]
Length = 511
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 115 MDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECK 174
+DS+LR + +L + K ++VEIN+ TA++ E ++ K +D + KV
Sbjct: 197 LDSELRNMQDLVEDYKKRYEVEINR---RTAAENEFVVLKK----DVDAAYMNKV----- 244
Query: 175 RLQGEVQRLREENKQFK 191
LQ +V L +E K FK
Sbjct: 245 ELQAKVDSLTDEIKFFK 261
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 122 VFELPAENDKPHDV--EINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGE 179
V++LP + P ++ ++ A+K E + + ++ E K+ EE +R Q E
Sbjct: 703 VWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERKR-QEELRRQQEE 761
Query: 180 V-QRLREENKQFKEEDGLRMRK 200
+ +R +EE ++ +EE+ L RK
Sbjct: 762 ILRRQQEEERKRREEEELARRK 783
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 122 VFELPAENDKPHDV--EINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGE 179
V++LP + P ++ ++ A+K E + + ++ E K+ EE +R Q E
Sbjct: 730 VWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERKR-QEELRRQQEE 788
Query: 180 V-QRLREENKQFKEEDGLRMRK 200
+ +R +EE ++ +EE+ L RK
Sbjct: 789 ILRRQQEEERKRREEEELARRK 810
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 122 VFELPAENDKPHDV--EINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGE 179
V++LP + P ++ ++ A+K E + + ++ E K+ EE +R Q E
Sbjct: 709 VWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERKR-QEELRRQQEE 767
Query: 180 V-QRLREENKQFKEEDGLRMRK 200
+ +R +EE ++ +EE+ L RK
Sbjct: 768 ILRRQQEEERKRREEEELARRK 789
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 122 VFELPAENDKPHDV--EINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGE 179
V++LP + P ++ ++ A+K E + + ++ E K+ EE +R Q E
Sbjct: 709 VWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERKR-QEELRRQQEE 767
Query: 180 V-QRLREENKQFKEEDGLRMRK 200
+ +R +EE ++ +EE+ L RK
Sbjct: 768 ILRRQQEEERKRREEEELARRK 789
>gi|226246665 keratin 72 isoform 2 [Homo sapiens]
Length = 469
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 115 MDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECK 174
+DS+LR + +L + K ++VEIN+ TA++ E ++ K +D + KV
Sbjct: 197 LDSELRNMQDLVEDYKKRYEVEINR---RTAAENEFVVLKK----DVDAAYMNKV----- 244
Query: 175 RLQGEVQRLREENKQFK 191
LQ +V L +E K FK
Sbjct: 245 ELQAKVDSLTDEIKFFK 261
>gi|226246663 keratin 72 isoform 1 [Homo sapiens]
Length = 511
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 115 MDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECK 174
+DS+LR + +L + K ++VEIN+ TA++ E ++ K +D + KV
Sbjct: 197 LDSELRNMQDLVEDYKKRYEVEINR---RTAAENEFVVLKK----DVDAAYMNKV----- 244
Query: 175 RLQGEVQRLREENKQFK 191
LQ +V L +E K FK
Sbjct: 245 ELQAKVDSLTDEIKFFK 261
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 126 PAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLRE 185
PA P V ++S +S K+ + + D E +++ E +RL E QR +E
Sbjct: 439 PASAPAPAPVPTPAMVSAPSSTVNASASVKTSAGTTDPEEATRLLAEKRRLARE-QREKE 497
Query: 186 ENKQFKEEDGLRMRKTVQSNSPISALAPTGKEE 218
E ++ +E++ L +K + ++ T +EE
Sbjct: 498 ERER-REQEELERQKREELAQRVAEERTTRREE 529
>gi|199559785 pseudouridylate synthase 3 [Homo sapiens]
Length = 481
Score = 30.8 bits (68), Expect = 1.1
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 162 DDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLR 197
D + +K+++ + L+ EVQRL++E + KE+ +R
Sbjct: 7 DRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIR 42
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 30.8 bits (68), Expect = 1.1
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 92 SMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETP 151
S+ P TS +E + EAK LR E E VE N+ +S + + +
Sbjct: 287 SLAPPAVTSVVEQLQDEAK-------HLRQEVE-GLEGKLQSQVENNQALSLLSKEQKQR 338
Query: 152 IVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLRMRKTVQ 203
+ + L + EV++V E+ +RL + +RLRE+ K +E+ G R+RK Q
Sbjct: 339 LQEQE--EMLREQEVQRVREQ-ERLCEQNERLREQQKTLQEQ-GERLRKQEQ 386
Score = 27.7 bits (60), Expect = 9.4
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 109 AKPEDLMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKK 168
AKP L + V E + K + + + K ++ + + S L + ++
Sbjct: 283 AKPPSLAPPAVTSVVEQLQDEAK----HLRQEVEGLEGKLQSQVENNQALSLLSKEQKQR 338
Query: 169 VMEECKRL-QGEVQRLREENKQFKEEDGLR-MRKTVQ 203
+ E+ + L + EVQR+RE+ + ++ + LR +KT+Q
Sbjct: 339 LQEQEEMLREQEVQRVREQERLCEQNERLREQQKTLQ 375
>gi|18141299 zinc finger and BTB domain containing 26 [Homo sapiens]
Length = 441
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 103 EAVWKEAKPEDLMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSS-SL 161
+A+WK KP+ MDSK C + + K + + + K ++P + S S +
Sbjct: 121 QALWKFIKPKQPMDSKEGCEPQSASPQSKEQQGD-----ARGSPKQDSPCIHPSEDSMDM 175
Query: 162 DDTEVKKVMEECKRLQGEVQRLREENKQFKEE 193
+D++++ V E EV+ +++N+ E
Sbjct: 176 EDSDIQIVKVESIGDVSEVRSKKDQNQFISSE 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,773,053
Number of Sequences: 37866
Number of extensions: 379858
Number of successful extensions: 2185
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 2069
Number of HSP's gapped (non-prelim): 217
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.