Guide to the Human Genome
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Name: SLC45A1 Sequence: fasta or formatted (748aa) NCBI GI: 122937193
Description:

DNB5

Referenced in:

Skin and Related Tissues
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         50           2
 C cysteine            2.4         18           1
 D aspartate           4.4         33           1
 E glutamate           3.3         25           2
 F phenylalanine       5.3         40           1
 G glycine             9.5         71           4
 H histidine           1.7         13           1
 I isoleucine          4.7         35           1
 K lysine              2.3         17           2
 L leucine            13.1         98           3
 M methionine          1.9         14           2
 N asparagine          2.5         19           2
 P proline             7.9         59           5
 Q glutamine           2.4         18           2
 R arginine            5.5         41           3
 S serine             10.6         79           2
 T threonine           5.3         40           2
 V valine              5.9         44           2
 W tryptophan          0.9          7           1
 Y tyrosine            3.6         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DNB5 
SLC45A4               0.223   solute carrier family 45, member 4 
SLC45A2               0.129   membrane-associated transporter protein isoform a [H...
SLC45A2               0.129   membrane-associated transporter protein isoform b [H...
SLC45A3               0.058   prostein 
ENAH                  0.013   enabled homolog isoform a 
ENAH                  0.013   enabled homolog isoform b 
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.009   PREDICTED: hypothetical protein LOC80164 
EFS                   0.009   embryonal Fyn-associated substrate isoform 2 
EFS                   0.009   embryonal Fyn-associated substrate isoform 1 
RAPH1                 0.009   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
POU6F2                0.008   POU domain, class 6, transcription factor 2 
BRD4                  0.008   bromodomain-containing protein 4 isoform long 
RBM33                 0.008   RNA binding motif protein 33 
SH3BP1                0.008   SH3-domain binding protein 1 
SGIP1                 0.007   SH3-domain GRB2-like (endophilin) interacting prote...
WASL                  0.007   Wiskott-Aldrich syndrome gene-like protein 
RNASEN                0.007   ribonuclease III, nuclear isoform 2 
RNASEN                0.007   ribonuclease III, nuclear isoform 1 
FAM155B               0.007   transmembrane protein 28 
NACA                  0.007   nascent polypeptide-associated complex alpha subuni...
FMNL1                 0.007   formin-like 1 
HCN4                  0.007   hyperpolarization activated cyclic nucleotide-gated p...
HIC1                  0.007   hypermethylated in cancer 1 isoform 2 
HIC1                  0.007   hypermethylated in cancer 1 isoform 1 
PRG4                  0.007   proteoglycan 4 isoform D 
PRG4                  0.007   proteoglycan 4 isoform C 
PRG4                  0.007   proteoglycan 4 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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