Guide to the Human Genome
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Name: SLC18A1 Sequence: fasta or formatted (525aa) NCBI GI: 208879454
Description:

solute carrier family 18 (vesicular monoamine), member 1 isoform a

Referenced in:

Acetylcholine
Catecholamines
Solute Carrier Families

Other entries for this name:
alt prot [493aa] solute carrier family 18 (vesicular monoamine), member 1 isoform b
alt prot [472aa] solute carrier family 18 (vesicular monoamine), member 1 isoform c
alt mRNA [525aa] solute carrier family 18 (vesicular monoamine), member 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         49           2
 C cysteine            1.7          9           1
 D aspartate           2.9         15           2
 E glutamate           4.2         22           3
 F phenylalanine       5.9         31           2
 G glycine             9.0         47           2
 H histidine           1.9         10           1
 I isoleucine          5.9         31           1
 K lysine              2.9         15           1
 L leucine            13.0         68           3
 M methionine          5.0         26           2
 N asparagine          3.0         16           3
 P proline             6.5         34           3
 Q glutamine           2.1         11           1
 R arginine            2.5         13           1
 S serine              7.4         39           2
 T threonine           5.3         28           1
 V valine              8.2         43           3
 W tryptophan          1.0          5           1
 Y tyrosine            2.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 18 (vesicular monoamine), mem... 
SLC18A1               1.000   solute carrier family 18 (vesicular monoamine), membe...
SLC18A1               0.915   solute carrier family 18 (vesicular monoamine), mem...
SLC18A1               0.838   solute carrier family 18 (vesicular monoamine), mem...
SLC18A2               0.623   solute carrier family 18 (vesicular monoamine), memb...
SLC18A3               0.309   vesicular acetylcholine transporter 
C6orf192              0.080   hypothetical protein LOC116843 
SVOPL                 0.018   SVOP-like isoform 1 
SLC17A5               0.016   sialin 
SLC16A7               0.016   solute carrier family 16, member 7 
SLC16A1               0.015   solute carrier family 16, member 1 
SLC16A3               0.013   solute carrier family 16, member 3 
SLC16A3               0.013   solute carrier family 16, member 3 
SLC16A3               0.013   solute carrier family 16, member 3 
SLC16A5               0.013   solute carrier family 16, member 5 
MFSD10                0.012   major facilitator superfamily domain containing 10 ...
LOC100133772          0.012   PREDICTED: similar to solute carrier family 16, mem...
MFSD10                0.012   major facilitator superfamily domain containing 10 ...
SLC16A9               0.012   solute carrier family 16 (monocarboxylic acid transp...
SVOP                  0.011   SV2 related protein 
SLC4A1                0.010   solute carrier family 4, anion exchanger, member 1 [H...
SLC22A2               0.010   solute carrier family 22 member 2 
SLC16A2               0.010   solute carrier family 16, member 2 
SLC2A12               0.010   solute carrier family 2 (facilitated glucose transpo...
SLC4A2                0.010   solute carrier family 4, anion exchanger, member 2 ...
SLC37A4               0.008   solute carrier family 37 (glucose-6-phosphate transpo...
SLC16A8               0.008   solute carrier family 16, member 8 
SLC28A1               0.007   solute carrier family 28, member 1 isoform 1 
SLC22A6               0.007   solute carrier family 22 member 6 isoform d 
SLC22A6               0.007   solute carrier family 22 member 6 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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