Guide to the Human Genome
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Name: MFSD1 Sequence: fasta or formatted (465aa) NCBI GI: 12232393
Description:

major facilitator superfamily domain containing 1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         44           2
 C cysteine            3.0         14           1
 D aspartate           2.6         12           1
 E glutamate           4.1         19           3
 F phenylalanine       7.3         34           2
 G glycine             8.8         41           2
 H histidine           1.3          6           1
 I isoleucine          6.9         32           2
 K lysine              3.0         14           1
 L leucine            13.8         64           3
 M methionine          3.7         17           2
 N asparagine          3.2         15           1
 P proline             3.0         14           1
 Q glutamine           3.0         14           1
 R arginine            3.2         15           1
 S serine              6.2         29           2
 T threonine           3.9         18           2
 V valine              8.0         37           2
 W tryptophan          2.4         11           1
 Y tyrosine            3.2         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   major facilitator superfamily domain containing 1 [H... 
LOC100133772          0.011   PREDICTED: similar to solute carrier family 16, mem...
SLC24A4               0.011   solute carrier family 24 member 4 isoform 3 
SLC24A4               0.011   solute carrier family 24 member 4 isoform 2 precurso...
SLC24A4               0.011   solute carrier family 24 member 4 isoform 1 precurso...
SLC16A5               0.011   solute carrier family 16, member 5 
FLVCR1                0.011   feline leukemia virus subgroup C cellular receptor 1 ...
SLC2A8                0.010   solute carrier family 2 (facilitated glucose transpo...
SLC6A5                0.010   solute carrier family 6 (neurotransmitter transporte...
C6orf192              0.009   hypothetical protein LOC116843 
UNC93A                0.009   unc-93 homolog A isoform 2 
SLC2A12               0.009   solute carrier family 2 (facilitated glucose transpo...
SLC16A10              0.008   solute carrier family 16, member 10 
MFSD7                 0.008   major facilitator superfamily domain containing 7 [H...
SLC38A11              0.008   solute carrier family 38, member 11 
OR2F1                 0.008   olfactory receptor, family 2, subfamily F, member 1 ...
UNC93A                0.007   unc-93 homolog A isoform 1 
SLC17A4               0.007   solute carrier family 17 (sodium phosphate), member 4...
PTPLAD1               0.007   protein tyrosine phosphatase-like A domain containi...
CLCN2                 0.005   chloride channel 2 
SLC22A17              0.005   solute carrier family 22, member 17 isoform b 
SLC18A3               0.005   vesicular acetylcholine transporter 
SLC44A5               0.005   solute carrier family 44, member 5 isoform B 
SLC44A5               0.005   solute carrier family 44, member 5 isoform A 
HIATL1                0.005   hippocampus abundant transcript-like 1 
SPNS1                 0.005   spinster homolog 1 isoform 3 
SPNS1                 0.005   spinster homolog 1 isoform 1 
SPNS1                 0.005   spinster homolog 1 isoform 1 
SLC6A16               0.004   solute carrier family 6, member 16 
GDPD4                 0.004   glycerophosphodiester phosphodiesterase domain conta...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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