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Search of human proteins with 4759022
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759022 RAD9 homolog [Homo sapiens]
(391 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759022 RAD9 homolog [Homo sapiens] 785 0.0
gi|169234617 RAD9 homolog B [Homo sapiens] 224 8e-59
gi|55741677 SET domain containing 1A [Homo sapiens] 42 0.001
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 35 0.12
gi|239756385 PREDICTED: similar to hCG1991431 [Homo sapiens] 34 0.26
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 34 0.26
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 33 0.34
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 33 0.34
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 33 0.44
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 33 0.44
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 33 0.44
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 33 0.44
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 33 0.44
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens] 33 0.44
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 33 0.44
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 33 0.44
gi|171906567 peripheral benzodiazepine receptor-associated prote... 33 0.44
gi|171906559 peripheral benzodiazepine receptor-associated prote... 33 0.44
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] 33 0.44
gi|9945322 solute carrier family 17, member 7 [Homo sapiens] 33 0.58
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ... 33 0.58
gi|18496983 CAP-GLY domain containing linker protein 3 [Homo sap... 33 0.58
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 32 0.75
gi|33946327 nucleoporin 214kDa [Homo sapiens] 32 0.75
gi|239756864 PREDICTED: hypothetical protein [Homo sapiens] 32 0.75
gi|239753060 PREDICTED: similar to hCG1739112 [Homo sapiens] 32 0.75
gi|239751356 PREDICTED: hypothetical protein XP_002347829 [Homo ... 32 0.75
gi|239747612 PREDICTED: hypothetical protein XP_002347909 [Homo ... 32 0.75
gi|239745867 PREDICTED: hypothetical protein XP_002343607 [Homo ... 32 0.75
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 32 0.75
>gi|4759022 RAD9 homolog [Homo sapiens]
Length = 391
Score = 785 bits (2027), Expect = 0.0
Identities = 391/391 (100%), Positives = 391/391 (100%)
Query: 1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQ 60
MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQ
Sbjct: 1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQ 60
Query: 61 YQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRK 120
YQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRK
Sbjct: 61 YQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRK 120
Query: 121 THNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIGRGRRVILRS 180
THNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIGRGRRVILRS
Sbjct: 121 THNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIGRGRRVILRS 180
Query: 181 YHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHF 240
YHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHF
Sbjct: 181 YHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHF 240
Query: 241 DAPGRPAIFTIKDSLLDGHFVLATLSDTDSHSQDLGSPERHQPVPQLQAHSTPHPDDFAN 300
DAPGRPAIFTIKDSLLDGHFVLATLSDTDSHSQDLGSPERHQPVPQLQAHSTPHPDDFAN
Sbjct: 241 DAPGRPAIFTIKDSLLDGHFVLATLSDTDSHSQDLGSPERHQPVPQLQAHSTPHPDDFAN 300
Query: 301 DDIDSYMIAMETTIGNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKK 360
DDIDSYMIAMETTIGNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKK
Sbjct: 301 DDIDSYMIAMETTIGNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKK 360
Query: 361 FRSLFFGSILAPVRSPQGPSPVLAEDSEGEG 391
FRSLFFGSILAPVRSPQGPSPVLAEDSEGEG
Sbjct: 361 FRSLFFGSILAPVRSPQGPSPVLAEDSEGEG 391
>gi|169234617 RAD9 homolog B [Homo sapiens]
Length = 429
Score = 224 bits (572), Expect = 8e-59
Identities = 136/383 (35%), Positives = 216/383 (56%), Gaps = 17/383 (4%)
Query: 1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQ 60
+KC+++G VKV GKAV +LSRI DE +L+P + GL+LR VNSSRSAY C LF+P+FFQ
Sbjct: 5 LKCVMSGSQVKVFGKAVQALSRISDEFWLDPSKKGLALRCVNSSRSAYGCVLFSPVFFQH 64
Query: 61 YQ----AATPGQDL-----LRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQ 111
YQ +L L+CK+ MKS L +FR L LE+ +EKC I ++V+Q
Sbjct: 65 YQWSALVKMSENELDTTLHLKCKLGMKSILPIFRCLNSLERNIEKCRIFTRSDKCKVVIQ 124
Query: 112 LHCKFGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIG 171
+ G+++THN+ FQ+ + LQ +FD C + L R+L +A++ F+ + EVTL +
Sbjct: 125 FFYRHGIKRTHNICFQESQPLQVIFDKNVCTNTLMIQPRLLADAIVLFTSSQEEVTLAV- 183
Query: 172 RGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAES 231
L+S +EE D + A+ +EM +G ++F Q ITFC KE +G+L+F+E+
Sbjct: 184 TPLNFCLKSSNEESMD-LSNAVHSEMFVGSDEFDFFQIGMDTEITFCFKELKGILTFSEA 242
Query: 232 ANLNLSIHFDAPGRPAIFTIKDSLLDGHFVLATLSDTDSHS---QDLGSPERHQPVPQLQ 288
+ +SI+FD PG+P +I D L++ +F+LATL+D S + Q L ++ + ++
Sbjct: 243 THAPISIYFDFPGKPLALSIDDMLVEANFILATLADEQSRASSPQSLCLSQKRKRSDLIE 302
Query: 289 AHSTPHPDDFANDDIDSYMIAMETTIGNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAE 348
+ + A + I S A E + ++ P + G SE + +
Sbjct: 303 KKAGKNVTGQALECI-SKKAAPRRLYPKETLTNISALENCGSPAMKRVDGDVSEVSESSV 361
Query: 349 PST--VPGTPPPKKFRSLFFGSI 369
+T VPG+ +KF +FFG++
Sbjct: 362 SNTEEVPGSLCLRKFSCMFFGAV 384
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 278 PERHQPVPQLQAHSTPHPDDFANDDIDSY--MIAMETTIGNEGSRVLPSISLSPGPQPPK 335
P R PVP P P+ A + A PS L P P+PP
Sbjct: 1080 PPREVPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTEESPPSAPLRP-PEPPA 1138
Query: 336 SPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGP 379
P + DE S +P PPPKK R S + V +P+ P
Sbjct: 1139 GPPAPAPRPDERPSSPIPLLPPPKKRRKTVSFSAIEVVPAPEPP 1182
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 35.0 bits (79), Expect = 0.12
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 323 PSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRS----PQG 378
P +SP P P P P EE++E+ P VP T K+ R S A + P+G
Sbjct: 432 PPPPVSPPPLPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRAEREAARAGPEG 491
Query: 379 PSPVLAEDSEGEG 391
SP S G
Sbjct: 492 TSPPTPTPSTATG 504
>gi|239756385 PREDICTED: similar to hCG1991431 [Homo sapiens]
Length = 232
Score = 33.9 bits (76), Expect = 0.26
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 277 SPERHQPVPQLQAHSTPHPD--DFANDDIDSYMIAMETTIGNEGSRVLPSISLSPGPQPP 334
SP P HS+P PD + ++ A+E +G S + P++ ++ P PP
Sbjct: 55 SPTLPTLYPVSSTHSSPSPDVAELWTGGTVAWESALEGGLGPVDSELWPTVGVASLPPPP 114
Query: 335 KSPGPHSEEEDEAEPSTVPGTPPP 358
+P P + D P P P
Sbjct: 115 IAPLPEMKGNDSPLQPGTPTFPTP 138
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 33.9 bits (76), Expect = 0.26
Identities = 34/120 (28%), Positives = 38/120 (31%), Gaps = 10/120 (8%)
Query: 278 PERHQPVPQLQAHSTPHPDDFANDDIDSYMIAMETTIGNEGSRVLPSISLSP------GP 331
P HQP P Q H P D + GS S S P G
Sbjct: 82 PPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGA 141
Query: 332 QPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGPSPVLAEDSEGEG 391
P PGP + A S PG PPP S G P ++ P P A G G
Sbjct: 142 PPGSGPGP-TPTPPPAVTSAPPGAPPPTPPSS---GVPTTPPQAGGPPPPPAAVPGPGPG 197
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 33.5 bits (75), Expect = 0.34
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 22/88 (25%)
Query: 274 DLGSPERHQPVP---QLQAHSTPHPDDFANDDIDSYMIAMETTIGNEGSRVLPSISLSPG 330
D PER P Q Q HS PHP + A T G R++P+ PG
Sbjct: 288 DAWGPERKGSAPPERQEQRHSLPHPYPYP---------APAYTAHPPGHRLVPAAPPGPG 338
Query: 331 PQPPKSPGPHSEEEDEAEPSTVPGTPPP 358
P+P PG S +P T PP
Sbjct: 339 PRP---PGAESH-------GCLPATRPP 356
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 33.5 bits (75), Expect = 0.34
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 323 PSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGPSPV 382
P++S PQP P S+VPG P P A ++P PSPV
Sbjct: 443 PTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPP-----------AASKAPVVPSPV 491
Query: 383 LAEDSEGEG 391
L SEG G
Sbjct: 492 LQSPSEGLG 500
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 33.1 bits (74), Expect = 0.44
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 329 PGPQPPKSPGPHSEEEDEAEPSTVPGTPP 357
PGP PP+ PGP A P +PG PP
Sbjct: 320 PGPFPPRPPGPLGPPLTLAPPPHLPGPPP 348
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 33.1 bits (74), Expect = 0.44
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 271 HSQDLGSPERHQPVPQLQAHSTPHPDDFANDDIDSYMIAMETTIGNEGSRVLPSISLS-- 328
H + G P+ QP P +A +T + + +++ + +E V +SLS
Sbjct: 575 HGRRTGGPQATQPRPPARAQATQGGREGQARTLGPAAPTVDSNLSSEARPVTSFLSLSQV 634
Query: 329 PGPQPPKSPGPHSEEEDEAEPSTVPG 354
GPQ P EEE+E E PG
Sbjct: 635 SGPQLP----GEGEEEEEGEDDGAPG 656
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 33.1 bits (74), Expect = 0.44
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 315 GNEGSRVLPSISLSPG----PQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFR 362
G +G R P + PG P P PGP ++ D+ +PG P PK R
Sbjct: 45 GEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDG----IPGPPGPKGIR 92
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 315 GNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSL 364
G +GS+ P + PGP P G E+ + P +PG PK ++ L
Sbjct: 938 GEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPG-IPGVSGPKGYQGL 986
Score = 30.4 bits (67), Expect = 2.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 315 GNEGSRVLPSISLSPG------------PQPPKSPGPHSEEEDEAEPS-TVPGTP 356
G +G R P I PG P PP PG ++ DE P ++PG P
Sbjct: 368 GEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPP 422
Score = 30.4 bits (67), Expect = 2.9
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 315 GNEGSRVLPSISLSPGPQPPKSPGPHSE-EEDEAEPSTVPGTPPPKKFRSL 364
G G P + PGP P SPGP E + P PG P P F+ L
Sbjct: 1223 GEPGFHGFPGVQGPPGP--PGSPGPALEGPKGNPGPQGPPGRPGPTGFQGL 1271
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 33.1 bits (74), Expect = 0.44
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 315 GNEGSRVLPSISLSPG----PQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFR 362
G +G R P + PG P P PGP ++ D+ +PG P PK R
Sbjct: 45 GEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDG----IPGPPGPKGIR 92
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 315 GNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSL 364
G +GS+ P + PGP P G E+ + P +PG PK ++ L
Sbjct: 938 GEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPG-IPGVSGPKGYQGL 986
Score = 30.4 bits (67), Expect = 2.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 315 GNEGSRVLPSISLSPG------------PQPPKSPGPHSEEEDEAEPS-TVPGTP 356
G +G R P I PG P PP PG ++ DE P ++PG P
Sbjct: 368 GEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPP 422
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 33.1 bits (74), Expect = 0.44
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 315 GNEGSRVLPSISLSPG----PQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFR 362
G +G R P + PG P P PGP ++ D+ +PG P PK R
Sbjct: 45 GEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDG----IPGPPGPKGIR 92
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 315 GNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSL 364
G +GS+ P + PGP P G E+ + P +PG PK ++ L
Sbjct: 938 GEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPG-IPGVSGPKGYQGL 986
Score = 30.4 bits (67), Expect = 2.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 315 GNEGSRVLPSISLSPG------------PQPPKSPGPHSEEEDEAEPS-TVPGTP 356
G +G R P I PG P PP PG ++ DE P ++PG P
Sbjct: 368 GEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPP 422
>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
Length = 1137
Score = 33.1 bits (74), Expect = 0.44
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 302 DIDSYMIAMETTIGN--EGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPK 359
++ M ET++ + EG+ PS+ S P S PHS + PS++P +PP
Sbjct: 965 ELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHS-----SNPSSLPSSPPTH 1019
Query: 360 KFRSLFFGSILAPVRSP 376
S+ F S P+ +P
Sbjct: 1020 NHNSVPF-SNFGPIGTP 1035
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 33.1 bits (74), Expect = 0.44
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 302 DIDSYMIAMETTIGN--EGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPK 359
++ M ET++ + EG+ PS+ S P S PHS + PS++P +PP
Sbjct: 877 ELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHS-----SNPSSLPSSPPTH 931
Query: 360 KFRSLFFGSILAPVRSP 376
S+ F S P+ +P
Sbjct: 932 NHNSVPF-SNFGPIGTP 947
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 33.1 bits (74), Expect = 0.44
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 302 DIDSYMIAMETTIGN--EGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPK 359
++ M ET++ + EG+ PS+ S P S PHS + PS++P +PP
Sbjct: 919 ELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHS-----SNPSSLPSSPPTH 973
Query: 360 KFRSLFFGSILAPVRSP 376
S+ F S P+ +P
Sbjct: 974 NHNSVPF-SNFGPIGTP 989
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 33.1 bits (74), Expect = 0.44
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 323 PSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGPSPV 382
P S SPGP P SP H EP PG PP R + GS P P+P
Sbjct: 1041 PLASASPGPGDPSSPLQHPAPLGTQEP---PGAPPASPSREMAKGSHEDP------PAPC 1091
Query: 383 LAEDS 387
E++
Sbjct: 1092 SQEEA 1096
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 33.1 bits (74), Expect = 0.44
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 323 PSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGPSPV 382
P S SPGP P SP H EP PG PP R + GS P P+P
Sbjct: 1101 PLASASPGPGDPSSPLQHPAPLGTQEP---PGAPPASPSREMAKGSHEDP------PAPC 1151
Query: 383 LAEDS 387
E++
Sbjct: 1152 SQEEA 1156
>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
Length = 340
Score = 33.1 bits (74), Expect = 0.44
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 295 PDDFANDDIDSYMIAMETTIGNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPG 354
P+D + + ++ E T ++GSR+ + P P+P P P + + +P+ P
Sbjct: 101 PEDPCQETVSKPEVSKEAT-ADQGSRLESAAPPEPAPEPAPQPDPRPDSQPTPKPALQPE 159
Query: 355 TPPPKKFRSLFFGSILAPVRSPQGPSPVLAEDSEGE 390
P + + P+P + +S GE
Sbjct: 160 LP------------------TQEDPTPEILSESVGE 177
>gi|9945322 solute carrier family 17, member 7 [Homo sapiens]
Length = 560
Score = 32.7 bits (73), Expect = 0.58
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 341 SEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGPSPV 382
SE EDEAEP P PPP +G+ + + P+ P PV
Sbjct: 522 SEMEDEAEPPGAPPAPPPS------YGATHSTFQPPRPPPPV 557
>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 [Homo
sapiens]
Length = 1461
Score = 32.7 bits (73), Expect = 0.58
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 329 PGPQPPKSPGPHSEEEDEAEPSTVPGTPPP 358
P P PP PG HS P + P PPP
Sbjct: 1268 PTPPPPPPPGEHSSSGGSGVPFSTPPPPPP 1297
>gi|18496983 CAP-GLY domain containing linker protein 3 [Homo
sapiens]
Length = 547
Score = 32.7 bits (73), Expect = 0.58
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 329 PGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGPSPV 382
P P P G EEE+E EP VP P P + R PV P P+P+
Sbjct: 6 PAPMAPPPRGEEEEEEEEDEP--VPEAPSPTQERR------QKPVVHPSAPAPL 51
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 32.3 bits (72), Expect = 0.75
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 315 GNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVR 374
G GS P PGP P P S + E+ P+ G P P GS AP
Sbjct: 1035 GENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPA-------GSRGAP-- 1085
Query: 375 SPQGPSPVLAEDSE 388
PQGP E E
Sbjct: 1086 GPQGPRGDKGETGE 1099
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 32.3 bits (72), Expect = 0.75
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 326 SLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQGP 379
S S G Q S P S A P T TP P F +L FGS+L+ +P P
Sbjct: 1438 SFSFGSQQTNSTVPPS-----APPPTTAATPLPTSFPTLSFGSLLSSATTPSLP 1486
>gi|239756864 PREDICTED: hypothetical protein [Homo sapiens]
Length = 227
Score = 32.3 bits (72), Expect = 0.75
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 315 GNEGSRVLPSISL-------SPGPQPPKSPGPHSEEEDEAE--PSTVPGTPPPKKFRSLF 365
GN G+ LP + S GP P SPGP + D P+ P ++ +LF
Sbjct: 72 GNGGAHPLPRLQAWESAGGHSGGPAPTGSPGPSEQSWDRPPRYPTKSPAALRMPRYPTLF 131
Query: 366 FGSILAP--VRSP-----QGPSPVLAEDSEGEG 391
++L+P + SP Q PS V S G
Sbjct: 132 CPTLLSPPVLYSPHPLFLQDPSSVPGATSSASG 164
>gi|239753060 PREDICTED: similar to hCG1739112 [Homo sapiens]
Length = 211
Score = 32.3 bits (72), Expect = 0.75
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 326 SLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQG---PSPV 382
S SPGP PP S P S + P+ PG P FR S + P+G PS
Sbjct: 16 SASPGPAPPASQWPLSAQPSSCLPAAFPG--PAFDFRWPLQASTRPGLLPPKGLHRPSLC 73
Query: 383 LAEDS 387
L DS
Sbjct: 74 LTADS 78
>gi|239751356 PREDICTED: hypothetical protein XP_002347829 [Homo
sapiens]
Length = 227
Score = 32.3 bits (72), Expect = 0.75
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 315 GNEGSRVLPSISL-------SPGPQPPKSPGPHSEEEDEAE--PSTVPGTPPPKKFRSLF 365
GN G+ LP + S GP P SPGP + D P+ P ++ +LF
Sbjct: 72 GNGGAHPLPRLQAWESAGGHSGGPAPTGSPGPSEQSWDRPPRYPTKSPAALRMPRYPTLF 131
Query: 366 FGSILAP--VRSP-----QGPSPVLAEDSEGEG 391
++L+P + SP Q PS V S G
Sbjct: 132 CPTLLSPPVLYSPHPLFLQDPSSVPGATSSASG 164
>gi|239747612 PREDICTED: hypothetical protein XP_002347909 [Homo
sapiens]
Length = 211
Score = 32.3 bits (72), Expect = 0.75
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 326 SLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQG---PSPV 382
S SPGP PP S P S + P+ PG P FR S + P+G PS
Sbjct: 16 SASPGPAPPASQWPLSAQPSSCLPAAFPG--PAFDFRWPLQASTRPGLLPPKGLHRPSLC 73
Query: 383 LAEDS 387
L DS
Sbjct: 74 LTADS 78
>gi|239745867 PREDICTED: hypothetical protein XP_002343607 [Homo
sapiens]
Length = 227
Score = 32.3 bits (72), Expect = 0.75
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 315 GNEGSRVLPSISL-------SPGPQPPKSPGPHSEEEDEAE--PSTVPGTPPPKKFRSLF 365
GN G+ LP + S GP P SPGP + D P+ P ++ +LF
Sbjct: 72 GNGGAHPLPRLQAWESAGGHSGGPAPTGSPGPSEQSWDRPPRYPTKSPAALRMPRYPTLF 131
Query: 366 FGSILAP--VRSP-----QGPSPVLAEDSEGEG 391
++L+P + SP Q PS V S G
Sbjct: 132 CPTLLSPPVLYSPHPLFLQDPSSVPGATSSASG 164
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 32.3 bits (72), Expect = 0.75
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 318 GSRVLPSISLSPGPQPPKSPGPHSEEEDEAEPSTVPGTPPPKKFRSLFFGSILAPVRSPQ 377
G+ +L S+ L QPP PG E P+ P P + S L SP
Sbjct: 648 GTALLASLGLGRDLQPPGGPGRERGESPTTPPTPTPAPCPTEPPPSPLICFSLKTPDSPP 707
Query: 378 GPSPVLAE 385
P+P+L +
Sbjct: 708 TPAPLLLD 715
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,515,679
Number of Sequences: 37866
Number of extensions: 969518
Number of successful extensions: 7409
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 219
Number of HSP's that attempted gapping in prelim test: 6673
Number of HSP's gapped (non-prelim): 872
length of query: 391
length of database: 18,247,518
effective HSP length: 104
effective length of query: 287
effective length of database: 14,309,454
effective search space: 4106813298
effective search space used: 4106813298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.