Guide to the Human Genome
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Name: RAD9A Sequence: fasta or formatted (391aa) NCBI GI: 4759022
Description:

RAD9 homolog

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         30           2
 C cysteine            2.6         10           2
 D aspartate           5.1         20           2
 E glutamate           7.2         28           3
 F phenylalanine       5.4         21           2
 G glycine             6.9         27           2
 H histidine           3.1         12           1
 I isoleucine          3.6         14           1
 K lysine              3.8         15           2
 L leucine            11.5         45           2
 M methionine          2.0          8           1
 N asparagine          2.0          8           1
 P proline             7.9         31           3
 Q glutamine           4.3         17           2
 R arginine            5.1         20           2
 S serine             10.2         40           2
 T threonine           4.3         17           2
 V valine              5.9         23           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD9 homolog 
RAD9B                 0.262   RAD9 homolog B 
SETD1A                0.022   SET domain containing 1A 
MLL4                  0.013   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100291699          0.012   PREDICTED: similar to hCG1991431 
SFPQ                  0.012   splicing factor proline/glutamine rich (polypyrimidin...
KDM6B                 0.011   lysine (K)-specific demethylase 6B 
MBD6                  0.011   methyl-CpG binding domain protein 6 
CPSF6                 0.011   cleavage and polyadenylation specific factor 6, 68 ...
B4GALNT4              0.011   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
COL4A5                0.011   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.011   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.011   type IV collagen alpha 5 isoform 3 precursor 
SMG7                  0.011   SMG-7 homolog isoform 1 
SMG7                  0.011   SMG-7 homolog isoform 4 
SMG7                  0.011   SMG-7 homolog isoform 2 
BZRAP1                0.011   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.011   peripheral benzodiazepine receptor-associated prote...
PRRT2                 0.011   proline-rich transmembrane protein 2 
SLC17A7               0.011   solute carrier family 17, member 7 
RPRD2                 0.011   Regulation of nuclear pre-mRNA domain containing 2 ...
CLIP3                 0.011   CAP-GLY domain containing linker protein 3 
COL3A1                0.009   collagen type III alpha 1 preproprotein 
NUP214                0.009   nucleoporin 214kDa 
LOC100292918          0.009   PREDICTED: hypothetical protein 
LOC100292804          0.009   PREDICTED: similar to hCG1739112 
LOC100290477          0.009   PREDICTED: hypothetical protein XP_002347829 
LOC100289693          0.009   PREDICTED: hypothetical protein XP_002347909 
LOC100288411          0.009   PREDICTED: hypothetical protein XP_002343607 
MAP3K11               0.009   mitogen-activated protein kinase kinase kinase 11 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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