Guide to the Human Genome
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Name: LOC100291699 Sequence: fasta or formatted (232aa) NCBI GI: 239756385
Description:

PREDICTED: similar to hCG1991431

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         19           1
 C cysteine            1.7          4           1
 D aspartate           3.4          8           1
 E glutamate           5.6         13           2
 F phenylalanine       1.3          3           1
 G glycine             8.6         20           2
 H histidine           2.2          5           1
 I isoleucine          0.9          2           1
 K lysine              1.3          3           1
 L leucine            11.6         27           2
 M methionine          2.2          5           1
 N asparagine          2.2          5           1
 P proline            19.4         45           4
 Q glutamine           2.2          5           1
 R arginine            4.3         10           1
 S serine              9.1         21           2
 T threonine           8.2         19           2
 V valine              4.7         11           2
 W tryptophan          2.6          6           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1991431 
ADAMTS7               0.734   ADAM metallopeptidase with thrombospondin type 1 mot...
BCORL1                0.053   BCL6 co-repressor-like 1 
MUC2                  0.051   mucin 2 precursor 
FMN2                  0.047   formin 2 
MDC1                  0.043   mediator of DNA-damage checkpoint 1 
C6orf132              0.043   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.043   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.043   PREDICTED: hypothetical protein LOC647024 
PRR12                 0.043   proline rich 12 
DIAPH1                0.043   diaphanous 1 isoform 2 
DIAPH1                0.043   diaphanous 1 isoform 1 
CASKIN1               0.040   CASK interacting protein 1 
RERE                  0.040   atrophin-1 like protein isoform b 
RERE                  0.040   atrophin-1 like protein isoform a 
RERE                  0.040   atrophin-1 like protein isoform a 
MLL2                  0.038   myeloid/lymphoid or mixed-lineage leukemia 2 
APBB1IP               0.038   amyloid beta (A4) precursor protein-binding, family ...
MLXIPL                0.038   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.038   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.038   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.038   Williams Beuren syndrome chromosome region 14 isofor...
ATN1                  0.036   atrophin-1 
ATN1                  0.036   atrophin-1 
SON                   0.036   SON DNA-binding protein isoform F 
SON                   0.036   SON DNA-binding protein isoform B 
ZNF828                0.036   zinc finger protein 828 
MICALL1               0.036   molecule interacting with Rab13 
SRCAP                 0.034   Snf2-related CBP activator protein 
ZNF687                0.034   zinc finger protein 687 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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