Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292804 Sequence: fasta or formatted (211aa) NCBI GI: 239753060
Description:

PREDICTED: similar to hCG1739112

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         24           2
 C cysteine            3.3          7           1
 D aspartate           1.9          4           1
 E glutamate           0.0          0           0
 F phenylalanine       3.3          7           2
 G glycine             7.1         15           2
 H histidine           2.8          6           1
 I isoleucine          0.5          1           1
 K lysine              0.9          2           1
 L leucine            12.8         27           2
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline            15.6         33           2
 Q glutamine           6.2         13           1
 R arginine            7.1         15           2
 S serine             18.0         38           4
 T threonine           4.3          9           2
 V valine              2.8          6           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1739112 
LOC100289693          1.000   PREDICTED: hypothetical protein XP_002347909 
LOC100134105          0.609   PREDICTED: similar to hCG1793472 
LOC729737             0.149   PREDICTED: hypothetical protein 
LOC731275             0.127   PREDICTED: similar to Putative uncharacterized prot...
LOC728417             0.125   PREDICTED: hypothetical protein 
LOC728417             0.125   PREDICTED: hypothetical protein 
LOC728417             0.125   PREDICTED: hypothetical protein isoform 1 
LOC728417             0.122   PREDICTED: hypothetical protein isoform 2 
LOC100293878          0.120   PREDICTED: similar to hCG1779533 
LOC729660             0.120   PREDICTED: similar to Putative uncharacterized prot...
LOC100294359          0.120   PREDICTED: hypothetical protein 
LOC100287930          0.112   PREDICTED: hypothetical protein XP_002342772 
LOC100287930          0.112   PREDICTED: similar to Putative uncharacterized prot...
LOC100131871          0.110   PREDICTED: similar to hCG1779533 
LOC100131871          0.110   PREDICTED: similar to hCG1779533 
LOC100131871          0.110   PREDICTED: similar to hCG1779533 
LOC100287930          0.103   PREDICTED: similar to Putative uncharacterized prot...
LOC100129904          0.103   PREDICTED: hypothetical protein 
LOC100129904          0.103   PREDICTED: hypothetical protein 
LOC100129904          0.103   PREDICTED: hypothetical protein 
LOC100129904          0.103   PREDICTED: hypothetical protein 
LOC730826             0.100   PREDICTED: hypothetical protein 
LOC100288360          0.090   PREDICTED: hypothetical protein XP_002342802 
LOC100288360          0.090   PREDICTED: similar to Putative uncharacterized prot...
LOC100287093          0.090   PREDICTED: hypothetical protein XP_002342765 
LOC100133331          0.090   PREDICTED: hypothetical protein 
LOC100287093          0.090   PREDICTED: similar to Putative uncharacterized prot...
LOC100128326          0.086   PREDICTED: hypothetical protein 
LOC100128326          0.086   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press