Guide to the Human Genome
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Name: SLC17A7 Sequence: fasta or formatted (560aa) NCBI GI: 9945322
Description:

solute carrier family 17, member 7

Referenced in:

Glutamate
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         44           2
 C cysteine            2.1         12           1
 D aspartate           2.1         12           2
 E glutamate           5.7         32           3
 F phenylalanine       6.6         37           2
 G glycine             9.6         54           2
 H histidine           2.5         14           1
 I isoleucine          6.6         37           2
 K lysine              2.9         16           1
 L leucine             7.9         44           3
 M methionine          2.9         16           1
 N asparagine          2.1         12           2
 P proline             6.4         36           4
 Q glutamine           2.7         15           1
 R arginine            5.0         28           2
 S serine              7.9         44           2
 T threonine           4.8         27           2
 V valine              8.6         48           3
 W tryptophan          2.0         11           1
 Y tyrosine            3.8         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 17, member 7 
SLC17A6               0.778   solute carrier family 17 (sodium-dependent inorganic ...
SLC17A8               0.732   solute carrier family 17 (sodium-dependent inorganic...
SLC17A8               0.623   solute carrier family 17 (sodium-dependent inorgani...
SLC17A5               0.297   sialin 
SLC17A4               0.203   solute carrier family 17 (sodium phosphate), member 4...
SLC17A1               0.190   solute carrier family 17 (sodium phosphate), member...
SLC17A3               0.184   solute carrier family 17 (sodium phosphate), member...
SLC17A3               0.143   solute carrier family 17 (sodium phosphate), member...
SLC17A2               0.140   solute carrier family 17 (sodium phosphate), member 2...
SLC17A9               0.128   vesicular nucleotide transporter SLC17A9 
SLC37A4               0.020   solute carrier family 37 (glucose-6-phosphate transpo...
RXRB                  0.015   retinoid X receptor, beta 
SF1                   0.012   splicing factor 1 isoform 1 
FHOD3                 0.012   formin homology 2 domain containing 3 
SV2A                  0.010   synaptic vesicle glycoprotein 2 
WASF2                 0.010   WAS protein family, member 2 
YLPM1                 0.010   YLP motif containing 1 
KDM6B                 0.009   lysine (K)-specific demethylase 6B 
APBB1IP               0.009   amyloid beta (A4) precursor protein-binding, family ...
SLC18A3               0.009   vesicular acetylcholine transporter 
SFPQ                  0.009   splicing factor proline/glutamine rich (polypyrimidin...
SF3B2                 0.009   splicing factor 3B subunit 2 
WHAMM                 0.009   WAS protein homolog associated with actin, golgi me...
GLTSCR1               0.009   glioma tumor suppressor candidate region gene 1 [Ho...
ZIC5                  0.009   zinc finger protein of the cerebellum 5 
ABI1                  0.008   abl-interactor 1 isoform d 
ABI1                  0.008   abl-interactor 1 isoform b 
ABI1                  0.008   abl-interactor 1 isoform a 
LMOD2                 0.008   leiomodin 2 (cardiac) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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