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Search of human proteins with 4758352
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758352 ferredoxin 1 precursor [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758352 ferredoxin 1 precursor [Homo sapiens] 366 e-102
gi|72534754 ferredoxin 1-like [Homo sapiens] 92 3e-19
gi|91199552 ADP-ribosylation factor-like 16 [Homo sapiens] 32 0.24
gi|149773484 leucine rich repeat and fibronectin type III domain... 32 0.40
gi|4503355 dedicator of cytokinesis 1 [Homo sapiens] 31 0.53
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 30 0.90
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 30 0.90
gi|10863935 reticulon 1 isoform A [Homo sapiens] 30 0.90
gi|94966757 protein disulfide isomerase A2 [Homo sapiens] 30 1.2
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 30 1.5
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 29 2.6
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 29 2.6
gi|169184025 PREDICTED: hypothetical protein [Homo sapiens] 28 3.4
gi|169179740 PREDICTED: hypothetical protein [Homo sapiens] 28 3.4
gi|169180137 PREDICTED: hypothetical protein [Homo sapiens] 28 3.4
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 28 3.4
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 28 3.4
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 28 4.5
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 28 4.5
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 28 4.5
gi|239757697 PREDICTED: hypothetical protein XP_002345524 [Homo ... 28 5.8
gi|239752182 PREDICTED: hypothetical protein [Homo sapiens] 28 5.8
gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo ... 28 5.8
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 28 5.8
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 28 5.8
gi|73747844 ligase III, DNA, ATP-dependent isoform beta precurso... 28 5.8
gi|73747829 ligase III, DNA, ATP-dependent isoform alpha precurs... 28 5.8
gi|25121987 non-SMC condensin I complex, subunit H [Homo sapiens] 28 5.8
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 28 5.8
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens] 27 7.6
>gi|4758352 ferredoxin 1 precursor [Homo sapiens]
Length = 184
Score = 366 bits (939), Expect = e-102
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARAR 60
MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARAR
Sbjct: 1 MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARAR 60
Query: 61 SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 120
SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE
Sbjct: 61 SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 120
Query: 121 DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDV 180
DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDV
Sbjct: 121 DHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDV 180
Query: 181 GKTS 184
GKTS
Sbjct: 181 GKTS 184
>gi|72534754 ferredoxin 1-like [Homo sapiens]
Length = 183
Score = 91.7 bits (226), Expect = 3e-19
Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 12/173 (6%)
Query: 3 AAGGARLLRAASAVLGGPAGRWLHHAGSRAGSS-----GLLRNRGPGGSAEASRSLSVSA 57
AA AR +A +L G W + G +GS G R GS A A
Sbjct: 2 AASMARGGVSARVLLQAARGTWWNRPGGTSGSGEGVALGTTRKFQATGSRPAGEE---DA 58
Query: 58 RARSSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHL 117
D + V F++R G+ + G+VGD++L + + +D++G ACE +LACSTCH+
Sbjct: 59 GGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEG--ACEASLACSTCHV 116
Query: 118 -IFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPE 169
+ EDH+ + L + E+DMLD+A L + SRLGCQI LT ++ +P+
Sbjct: 117 YVSEDHL-DLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPK 168
>gi|91199552 ADP-ribosylation factor-like 16 [Homo sapiens]
Length = 197
Score = 32.3 bits (72), Expect = 0.24
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 35/197 (17%)
Query: 1 MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARAR 60
M AGG L R A + G G++ G LL G G + R VS+R
Sbjct: 1 MRVAGGRALSRGAELRVPG---------GAKHGMCLLLGATGVGKTLLVKRLQEVSSRDG 51
Query: 61 SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTL------ACST 114
GE T+ VG +L D+V + + I G C G + C +
Sbjct: 52 KGDL-----------GEPPPTRPTVGTNLTDIVAQRKITIRELGGCMGPIWSSYYGNCRS 100
Query: 115 CHLIFEDHIYEKLDAITDEENDML---DLAYG----LTDRSRLGCQICLTKSMDNMTVRV 167
+ + +L A + +L LA L ++ L C + T+ M ++ +R+
Sbjct: 101 LLFVMDASDPTQLSASCVQLLGLLSAEQLAEASVLILFNKIDLPCYMS-TEEMKSL-IRL 158
Query: 168 PETVADARQSIDVGKTS 184
P+ +A A+Q+I + S
Sbjct: 159 PDIIACAKQNITTAEIS 175
>gi|149773484 leucine rich repeat and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 771
Score = 31.6 bits (70), Expect = 0.40
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 38 LRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGETLTTKGKV---GDSLLDVVV 94
L R GG A +VS R R+ + + VH++ DG L + GD LDV +
Sbjct: 300 LITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRVRGDGTLDVTI 359
Query: 95 ENNLDIDGFGACEGTLAC 112
D GT C
Sbjct: 360 TTLRD-------SGTFTC 370
>gi|4503355 dedicator of cytokinesis 1 [Homo sapiens]
Length = 1865
Score = 31.2 bits (69), Expect = 0.53
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 48 EASRSLSVSARARSSSEDKITVHFINRDGETLTTKGKVGDSLLDVVV 94
EA+ +L + A+ SED H RDG TT+G++ + L ++
Sbjct: 1235 EAAYTLLLHAKLLKWSEDVCVAHLTQRDGYQATTQGQLKEQLYQEII 1281
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 30.4 bits (67), Expect = 0.90
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 5 GGARLLRAASAVLGGPAGRW-----------LHHAGSRAGSSGLLRNRGPGGSAEASRSL 53
GG AA+A +GG AG AGS AG+ G + G G + S
Sbjct: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGA 66
Query: 54 SVSARARSSSEDKITVHFINRDGETLTTKGKVGD--SLLDVVVENNLDID 101
+ A E K+ + ++ D TTK + D S VV+ L +D
Sbjct: 67 KIDASKNEEDEGKMFIGGLSWD----TTKKDLKDYFSKFGEVVDCTLKLD 112
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 30.4 bits (67), Expect = 0.90
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 5 GGARLLRAASAVLGGPAGRW-----------LHHAGSRAGSSGLLRNRGPGGSAEASRSL 53
GG AA+A +GG AG AGS AG+ G + G G + S
Sbjct: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGA 66
Query: 54 SVSARARSSSEDKITVHFINRDGETLTTKGKVGD--SLLDVVVENNLDID 101
+ A E K+ + ++ D TTK + D S VV+ L +D
Sbjct: 67 KIDASKNEEDEGKMFIGGLSWD----TTKKDLKDYFSKFGEVVDCTLKLD 112
>gi|10863935 reticulon 1 isoform A [Homo sapiens]
Length = 776
Score = 30.4 bits (67), Expect = 0.90
Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 3/120 (2%)
Query: 17 LGGPAGRWLHHAGSRAGSSGLLRNRGPGGSA-EASRSLSVSARARSSSEDKITVHFINRD 75
L GP +WL H G + + P A E S L AR +S E +
Sbjct: 14 LAGPGSQWLRHRGEGENEAVTPKGATPAPQAGEPSPGLGARAREAASREAGSGPARQSPV 73
Query: 76 GETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEEN 135
+ G G S + DG G+C +L C+ ED Y I +EN
Sbjct: 74 AMETASTGVAGVSSAMDHTFSTTSKDGEGSCYTSLISDICYPPQEDSTY--FTGILQKEN 131
>gi|94966757 protein disulfide isomerase A2 [Homo sapiens]
Length = 525
Score = 30.0 bits (66), Expect = 1.2
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 119 FEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVAD 173
F+D E + D LD+ +GLTDR RL Q LTK + + E AD
Sbjct: 179 FQDLQDEDVATFLALAQDALDMTFGLTDRPRLFQQFGLTKDTVVLFKKFDEGRAD 233
>gi|153945765 mitogen-activated protein kinase kinase kinase 1
[Homo sapiens]
Length = 1512
Score = 29.6 bits (65), Expect = 1.5
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 1 MAAAGGARL-------LRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSL 53
MAAA G R RA S GG G L + + A ++GLLR G GG A
Sbjct: 1 MAAAAGNRASSSGFPGARATSPEAGGGGGA-LKASSAPAAAAGLLREAGSGGRERADWRR 59
Query: 54 SVSARARSSSEDKI 67
+ RS D++
Sbjct: 60 RQLRKVRSVELDQL 73
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 28.9 bits (63), Expect = 2.6
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 19 GPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGET 78
GP G L RA G L + A++ + +S +SE + + R GE
Sbjct: 564 GPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGL-RTGEV 622
Query: 79 LTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITD 132
T + +GD D + L G A +T HL+F D + E L ITD
Sbjct: 623 RTARA-LGDR--DAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITD 673
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 28.9 bits (63), Expect = 2.6
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 19 GPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGET 78
GP G L RA G L + A++ + +S +SE + + R GE
Sbjct: 564 GPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGL-RTGEV 622
Query: 79 LTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITD 132
T + +GD D + L G A +T HL+F D + E L ITD
Sbjct: 623 RTARA-LGDR--DAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITD 673
>gi|169184025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 28.5 bits (62), Expect = 3.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 20 PAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLS 54
PAG + GSR G+ + RGPGG+A S S S
Sbjct: 28 PAG---NKCGSRGGARWSSKPRGPGGAAAGSESQS 59
>gi|169179740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 28.5 bits (62), Expect = 3.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 20 PAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLS 54
PAG + GSR G+ + RGPGG+A S S S
Sbjct: 28 PAG---NKCGSRGGARWSSKPRGPGGAAAGSESQS 59
>gi|169180137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 28.5 bits (62), Expect = 3.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 20 PAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLS 54
PAG + GSR G+ + RGPGG+A S S S
Sbjct: 28 PAG---NKCGSRGGARWSSKPRGPGGAAAGSESQS 59
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 28.5 bits (62), Expect = 3.4
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 19 GPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGET 78
GP G L A G L + A++ + +S +SE + + R GE
Sbjct: 566 GPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGL-RTGEV 624
Query: 79 LTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITD 132
T + +GD D V + L G A +T HL+F D + E L ITD
Sbjct: 625 RTARA-LGDR--DAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITD 675
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 28.5 bits (62), Expect = 3.4
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 19 GPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGET 78
GP G L A G L + A++ + +S +SE + + R GE
Sbjct: 566 GPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGL-RTGEV 624
Query: 79 LTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITD 132
T + +GD D V + L G A +T HL+F D + E L ITD
Sbjct: 625 RTARA-LGDR--DAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITD 675
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 28.1 bits (61), Expect = 4.5
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 28 AGSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGETLTTKGKVGD 87
A + AGSSG PGG+A AS + S SA + SSS + G L G D
Sbjct: 63 AAAAAGSSGA---GVPGGAAAASAASSSSASSSSSSSSSAS------SGPALLRVGPGFD 113
Query: 88 SLLDVVVENNLDIDGFGACEG 108
+ L V ++ F A G
Sbjct: 114 AALQVSAAIGTNLRRFRAVFG 134
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 28.1 bits (61), Expect = 4.5
Identities = 26/60 (43%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 4 AGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPG-GSAEASRSLSVSARARSS 62
AGG A SA G PA R AG RAG +G R PG G A A+R AR S
Sbjct: 71 AGGPLCFPARSAAWGPPA-RASRAAGRRAGPAG-PPCRAPGRGRAAATRRSPAPGTARGS 128
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 28.1 bits (61), Expect = 4.5
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 2 AAAGGARLLRAASAVLGGPAGRWLHHAGS------RAGSSGLLRNRGPGGSAEASRSLSV 55
AA GGAR S+ GP L S +A SS R PG A SRS
Sbjct: 78 AARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEA 137
Query: 56 SARAR 60
+ + R
Sbjct: 138 TGKPR 142
>gi|239757697 PREDICTED: hypothetical protein XP_002345524 [Homo
sapiens]
Length = 147
Score = 27.7 bits (60), Expect = 5.8
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 2 AAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARA 59
+AAGGA G GRW+ H G S L G GGS E L + +A
Sbjct: 88 SAAGGA-----GGGAAAGAEGRWVGHGGPGILGS-LKEGLGVGGSQEQLAGLQLRLKA 139
>gi|239752182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 27.7 bits (60), Expect = 5.8
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 2 AAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARA 59
+AAGGA G GRW+ H G S L G GGS E L + +A
Sbjct: 88 SAAGGA-----GGGAAAGAEGRWVGHGGPGILGS-LKEGLGVGGSQEQLAGLQLRLKA 139
>gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo
sapiens]
Length = 411
Score = 27.7 bits (60), Expect = 5.8
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 3 AAGGARLLRAASA------VLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVS 56
+AG A + R ++A G GRW+ H G S L G GGS E L +
Sbjct: 342 SAGSASICRTSAAGGAGGGAAAGAEGRWVGHGGPGILGS-LKEGLGVGGSQEQLAGLQLR 400
Query: 57 ARA 59
+A
Sbjct: 401 LKA 403
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 27.7 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 18 GGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSS 63
GGP G G+ G SG + RGPG RS + R++S
Sbjct: 616 GGPLG------GAGGGGSGEGQGRGPGSRVSVRRSSRAPSSCRAAS 655
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 27.7 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 18 GGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSS 63
GGP G G+ G SG + RGPG RS + R++S
Sbjct: 616 GGPLG------GAGGGGSGEGQGRGPGSRVSVRRSSRAPSSCRAAS 655
>gi|73747844 ligase III, DNA, ATP-dependent isoform beta precursor
[Homo sapiens]
Length = 949
Score = 27.7 bits (60), Expect = 5.8
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 29 GSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGETLTTKG---KV 85
GS N+GP GSA + ++ S + + +E K++ + ++DG T K KV
Sbjct: 846 GSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLS-NSNSKDGNMQTAKPSAMKV 904
Query: 86 GDSL 89
G+ L
Sbjct: 905 GEKL 908
>gi|73747829 ligase III, DNA, ATP-dependent isoform alpha precursor
[Homo sapiens]
Length = 1009
Score = 27.7 bits (60), Expect = 5.8
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 29 GSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGETLTTKG---KV 85
GS N+GP GSA + ++ S + + +E K++ + ++DG T K KV
Sbjct: 846 GSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLS-NSNSKDGNMQTAKPSAMKV 904
Query: 86 GDSL 89
G+ L
Sbjct: 905 GEKL 908
>gi|25121987 non-SMC condensin I complex, subunit H [Homo sapiens]
Length = 741
Score = 27.7 bits (60), Expect = 5.8
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 46 SAEASRSLSVSARARSSSEDKITVHF---INRDGET-LTTKGKVGDSLLD----VVVENN 97
++ +SRS+ +SA + +IT H+ I E +TTK G L+D ++ + +
Sbjct: 86 ASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQKD 145
Query: 98 LDIDGFGACEGTLACST 114
+ F GTL ST
Sbjct: 146 TEPTNFKVAAGTLDAST 162
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 27.7 bits (60), Expect = 5.8
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 19 GPAGRWLHHAGSRAGSSGLLRNRGPG-GSAEASRSLSVSARARSSSEDKITVHFINRDGE 77
G GR GSR G R RG G G ASR + + RAR ++D+ F R
Sbjct: 1685 GGRGRGGRGRGSRGRGGGGTRGRGRGRGGRGASRGATRAKRAR-IADDEFDTMFSGRFSR 1743
Query: 78 TLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACST 114
K + V+ ++ D D F + E L T
Sbjct: 1744 LPRIKTR-NQGRRTVLYNDDSDNDNFVSTEDPLNLGT 1779
>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
Length = 462
Score = 27.3 bits (59), Expect = 7.6
Identities = 26/61 (42%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 11 RAASAVLGGPAGRWLHHAGSRAGSSGLL---RNRGPGG--SAEASRS----LSVSARARS 61
R + GG G AG A SG L R+ GPGG S +SRS LS RARS
Sbjct: 306 RRRAGAEGGAGGADGQGAGPGAAESGALTASRSPGPGGRLSRASSRSVEFFLSRRRRARS 365
Query: 62 S 62
S
Sbjct: 366 S 366
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,678,873
Number of Sequences: 37866
Number of extensions: 283705
Number of successful extensions: 1288
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1272
Number of HSP's gapped (non-prelim): 52
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.