LIG3 35382

Name: LIG3	Sequence: fasta or formatted (1009aa)		NCBI GI: 73747829
Description: ligase III, DNA, ATP-dependent isoform alpha precursor		Referenced in: DNases, Recombination, and DNA Repair polyADP-Ribose Polymerase Family Replication Proteins
Other entries for this name: alt prot [949aa] ligase III, DNA, ATP-dependent isoform beta precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 73 2 C cysteine 2.6 26 1 D aspartate 6.2 63 2 E glutamate 5.7 58 2 F phenylalanine 4.7 47 2 G glycine 6.1 62 2 H histidine 2.4 24 2 I isoleucine 3.9 39 2 K lysine 9.8 99 3 L leucine 8.9 90 3 M methionine 2.5 25 2 N asparagine 3.2 32 2 P proline 5.3 53 2 Q glutamine 3.8 38 3 R arginine 5.4 54 2 S serine 7.7 78 3 T threonine 5.0 50 3 V valine 6.5 66 2 W tryptophan 1.1 11 1 Y tyrosine 2.1 21 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 ligase III, DNA, ATP-dependent isoform alpha precurs... LIG3 0.922 ligase III, DNA, ATP-dependent isoform beta precurso... LIG1 0.074 DNA ligase I LIG4 0.063 DNA ligase IV LIG4 0.063 DNA ligase IV LIG4 0.063 DNA ligase IV PARP1 0.014 poly (ADP-ribose) polymerase family, member 1 [Homo... NOLC1 0.006 nucleolar and coiled-body phosphoprotein 1 PALLD 0.006 palladin CEP110 0.006 centrosomal protein 110kDa HIST1H1C 0.004 histone cluster 1, H1c XRCC1 0.004 X-ray repair cross complementing protein 1 LOC643446 0.004 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.004 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.004 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.004 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.004 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.004 PREDICTED: similar to ribonucleic acid binding prote... CACNA1F 0.004 calcium channel, voltage-dependent, L type, alpha 1F... RNPS1 0.004 RNA-binding protein S1, serine-rich domain CHD1 0.004 chromodomain helicase DNA binding protein 1 RNPS1 0.004 RNA-binding protein S1, serine-rich domain C6orf174 0.004 hypothetical protein LOC387104 COL18A1 0.004 alpha 1 type XVIII collagen isoform 3 precursor [Ho... COL18A1 0.004 alpha 1 type XVIII collagen isoform 2 precursor [Ho... COL18A1 0.004 alpha 1 type XVIII collagen isoform 1 precursor [Ho... MED1 0.004 mediator complex subunit 1 KCNB2 0.004 potassium voltage-gated channel, Shab-related subfam... TRAF3IP1 0.003 TNF receptor-associated factor 3 interacting protein... TCOF1 0.003 Treacher Collins-Franceschetti syndrome 1 isoform f... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.