Guide to the Human Genome
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Name: LOC100288476 Sequence: fasta or formatted (411aa) NCBI GI: 239746705
Description:

PREDICTED: hypothetical protein XP_002343815

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         63           3
 C cysteine            2.2          9           1
 D aspartate           2.4         10           1
 E glutamate           4.1         17           5
 F phenylalanine       2.9         12           3
 G glycine            11.9         49           3
 H histidine           3.2         13           2
 I isoleucine          3.2         13           1
 K lysine              2.9         12           2
 L leucine             9.7         40           2
 M methionine          1.5          6           1
 N asparagine          0.5          2           1
 P proline             7.3         30           3
 Q glutamine           3.6         15           2
 R arginine            6.6         27           1
 S serine             10.7         44           3
 T threonine           3.6         15           1
 V valine              6.1         25           3
 W tryptophan          1.2          5           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343815 
LOC100291691          0.271   PREDICTED: hypothetical protein XP_002345524 
LOC100294462          0.271   PREDICTED: hypothetical protein 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
ZIC2                  0.019   zinc finger protein of the cerebellum 2 
EVX2                  0.019   even-skipped homeobox 2 
EN1                   0.018   engrailed homeobox 1 
LOC100128074          0.018   PREDICTED: hypothetical protein 
LOC100288108          0.016   PREDICTED: hypothetical protein 
LOC100288108          0.016   PREDICTED: hypothetical protein XP_002342919 
MAZ                   0.016   MYC-associated zinc finger protein isoform 2 
MAZ                   0.016   MYC-associated zinc finger protein isoform 1 
LMTK3                 0.016   lemur tyrosine kinase 3 
MAF                   0.015   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.015   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
CDV3                  0.015   carnitine deficiency-associated gene expressed in v...
CDV3                  0.015   carnitine deficiency-associated gene expressed in ven...
RFX1                  0.015   regulatory factor X1 
LOC100128074          0.015   PREDICTED: hypothetical protein 
YEATS2                0.015   YEATS domain containing 2 
LOC100128074          0.015   PREDICTED: hypothetical protein 
CADPS                 0.015   Ca2+-dependent secretion activator isoform 2 
CADPS                 0.015   Ca2+-dependent secretion activator isoform 1 
CADPS                 0.015   Ca2+-dependent secretion activator isoform 3 
LOC100289745          0.014   PREDICTED: hypothetical protein XP_002347086 
LOC100288749          0.014   PREDICTED: hypothetical protein XP_002342931 
NKX2-3                0.014   NK2 transcription factor related, locus 3 
LOC100292082          0.014   PREDICTED: hypothetical protein XP_002345881 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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