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Search of human proteins with 47578101
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47578101 selenoprotein N, 1 isoform 2 precursor [Homo
sapiens]
(556 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47578101 selenoprotein N, 1 isoform 2 precursor [Homo sapiens] 1123 0.0
gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens] 1106 0.0
gi|10140847 homeobox A2 [Homo sapiens] 39 0.010
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 39 0.016
gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo ... 38 0.021
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 36 0.081
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 35 0.18
gi|38679957 active breakpoint cluster region-related protein is... 35 0.18
gi|118600977 C3 and PZP-like, alpha-2-macroglobulin domain conta... 35 0.24
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 35 0.24
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens] 34 0.31
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ... 34 0.31
gi|33563376 TBC1 domain family, member 16 [Homo sapiens] 34 0.31
gi|13128980 proline rich 14 [Homo sapiens] 34 0.31
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 34 0.40
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 34 0.40
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 34 0.40
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 34 0.40
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 33 0.53
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 33 0.53
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 33 0.53
gi|110832843 TBP-associated factor 4 [Homo sapiens] 33 0.53
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom... 33 0.53
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo... 33 0.53
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo... 33 0.53
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ... 33 0.69
gi|153792074 proline rich 12 [Homo sapiens] 33 0.69
gi|154813191 IQ motif containing E isoform 1 [Homo sapiens] 33 0.90
gi|38194229 kelch-like 17 [Homo sapiens] 33 0.90
gi|154813193 IQ motif containing E isoform 2 [Homo sapiens] 33 0.90
>gi|47578101 selenoprotein N, 1 isoform 2 precursor [Homo sapiens]
Length = 556
Score = 1123 bits (2905), Expect = 0.0
Identities = 556/556 (100%), Positives = 556/556 (100%)
Query: 1 MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60
MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR
Sbjct: 1 MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60
Query: 61 QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAASCEEEELPPDPSEE 120
QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAASCEEEELPPDPSEE
Sbjct: 61 QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAASCEEEELPPDPSEE 120
Query: 121 TLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPG 180
TLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPG
Sbjct: 121 TLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPG 180
Query: 181 QELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGA 240
QELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGA
Sbjct: 181 QELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGA 240
Query: 241 VACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVP 300
VACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVP
Sbjct: 241 VACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVP 300
Query: 301 NHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEATGPSVPSVILDEDGSMIDSHLPSGE 360
NHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEATGPSVPSVILDEDGSMIDSHLPSGE
Sbjct: 301 NHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEATGPSVPSVILDEDGSMIDSHLPSGE 360
Query: 361 PLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWG 420
PLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWG
Sbjct: 361 PLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWG 420
Query: 421 ALDDQSCUGSGRTLRETVLESSPILTLLNESFISTWSLVKELEELQNNQENSSHQKLAGL 480
ALDDQSC GSGRTLRETVLESSPILTLLNESFISTWSLVKELEELQNNQENSSHQKLAGL
Sbjct: 421 ALDDQSCUGSGRTLRETVLESSPILTLLNESFISTWSLVKELEELQNNQENSSHQKLAGL 480
Query: 481 HLEKYSFPVEMMICLPNGTVVHHINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYM 540
HLEKYSFPVEMMICLPNGTVVHHINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYM
Sbjct: 481 HLEKYSFPVEMMICLPNGTVVHHINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYM 540
Query: 541 QFLKEGLRRGLPLLQP 556
QFLKEGLRRGLPLLQP
Sbjct: 541 QFLKEGLRRGLPLLQP 556
>gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens]
Length = 590
Score = 1106 bits (2860), Expect = 0.0
Identities = 556/590 (94%), Positives = 556/590 (94%), Gaps = 34/590 (5%)
Query: 1 MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60
MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR
Sbjct: 1 MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60
Query: 61 QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGS------------------ 102
QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGS
Sbjct: 61 QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQP 120
Query: 103 ----------------TPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGV 146
TPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGV
Sbjct: 121 QLPWLNUSSCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGV 180
Query: 147 SRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRF 206
SRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRF
Sbjct: 181 SRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRF 240
Query: 207 YPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSE 266
YPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSE
Sbjct: 241 YPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSE 300
Query: 267 PPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIG 326
PPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIG
Sbjct: 301 PPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIG 360
Query: 327 YIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEV 386
YIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEV
Sbjct: 361 YIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEV 420
Query: 387 AMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESSPILT 446
AMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSC GSGRTLRETVLESSPILT
Sbjct: 421 AMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESSPILT 480
Query: 447 LLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINA 506
LLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINA
Sbjct: 481 LLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINA 540
Query: 507 NYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 556
NYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP
Sbjct: 541 NYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 590
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 39.3 bits (90), Expect = 0.010
Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 2 GRARP---GQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVR-----VCARHA 53
GR +P G RG P P A QPP P + + A ALL AAAAAA C H
Sbjct: 71 GRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHK 130
Query: 54 EA 55
E+
Sbjct: 131 ES 132
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 38.5 bits (88), Expect = 0.016
Identities = 65/235 (27%), Positives = 80/235 (34%), Gaps = 34/235 (14%)
Query: 11 PPSPGPAAQP--PAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTL 68
PP P P A P PAPP+R GA A A R+ A K+
Sbjct: 1147 PPPPRPVAPPTRPAPPQRPPPP---SGARSPAPTRKEFGGIGAPPSPGVARREMEAPKSP 1203
Query: 69 GTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAA-SCEEEELPPDP---SEETLTI 124
GT + D G SP+ L G PA S +PP S
Sbjct: 1204 GT------TRKDNIGRSQPSPQ------AGLAGPGPAGYSTARPTIPPRAGVISAPQSHA 1251
Query: 125 EARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELG 184
A L PE+ +K+ + G + L P A F Q LPPP Q L
Sbjct: 1252 RASAGRLTPESQSKTSETSKGSTFL--------PEPLKPQAAFPP---QSSLPPPAQRLQ 1300
Query: 185 EPWWIIPSELSMFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQG 239
EP ++P M N PP P + H L S +P VKT G
Sbjct: 1301 EP--LVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQVKTNGISDG 1353
>gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo
sapiens]
Length = 636
Score = 38.1 bits (87), Expect = 0.021
Identities = 61/238 (25%), Positives = 78/238 (32%), Gaps = 58/238 (24%)
Query: 11 PPSPGPAAQPPAPPRRRARSLA--LLGALLAAAAAAAVRVCARHAEAQAAARQELALKTL 68
PPSP +P PRRR LA G LL AAAAAA A A A A +L
Sbjct: 301 PPSPRLFPRPGFLPRRRRGVLAHRRRGVLLPAAAAAAAAAAAAAAAAAAFCLTQL----- 355
Query: 69 GTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAASCEEEELPPDPSEETLTIEARF 128
F P T AA C PP P
Sbjct: 356 -----------------------FAP-------PTAAAFCP----PPAPVPRLFARRGFL 381
Query: 129 QPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWW 188
P + + GFL + R R + A + R F P PPP + +
Sbjct: 382 HPRRRGFLPLFRRGFLPLFR------RGFFPAPPRLFILRRRGFLPPPPPPPRLFARLGF 435
Query: 189 IIPSELSM-----------FTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRF 235
+ P+ + G+L + F PPPP+ RL + PR F + F
Sbjct: 436 LPPAAAAFCPPPPAAAAFCLRGFLPDPAFSPPPPRLFAPPAPRLFAPPVPRLFARRGF 493
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 36.2 bits (82), Expect = 0.081
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 7 GQRGPPSPGPA-----AQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61
G PPSP P+ A PP PPR A + A A A R R A R+
Sbjct: 268 GPARPPSPSPSPVPAPAPPPGPPRPAAAA--------ATAPLANGRAGKRRPSRLVALRE 319
Query: 62 ELALKTLG 69
+ ALKTLG
Sbjct: 320 QKALKTLG 327
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 35.0 bits (79), Expect = 0.18
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 1 MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVR 47
MGR RPG+ PP+P PPAPP R L+ L AA A R
Sbjct: 114 MGRGRPGKGPPPNPS-RRLPPAPPGGRRTWLSALATGPAAGGAGRRR 159
>gi|38679957 active breakpoint cluster region-related protein
isoform a [Homo sapiens]
Length = 859
Score = 35.0 bits (79), Expect = 0.18
Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 48/232 (20%)
Query: 109 EEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFA 168
EE++ PP+ SE T+ + P+ +S+ G GVS GL
Sbjct: 35 EEQKGPPEGSE-TMPYIDESPTMSPQLSARSQGGGDGVSPTPPEGL-------------- 79
Query: 169 TRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPR 228
PG E G+ + + +G+L++ +E+ I++L ++ P
Sbjct: 80 ---------APGVEAGKG---LEMRKLVLSGFLAS----------EEIYINQLEALLLPM 117
Query: 229 PFVKTRFAPQGAVACLTAISDFYYTV--MFRIHAEFQLSEPPDFPFWFSPAQFTGHIILS 286
+K V + I +Y + ++ IH EF + P W S Q T +
Sbjct: 118 KPLKATATTSQPVLTIQQIETIFYKIQDIYEIHKEFYDNLCPKVQQWDS--QVTMGHLFQ 175
Query: 287 KDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEATGP 338
K A+ + ++ FV N++ V +E S+S+N I EL+ GP
Sbjct: 176 KLASQLGVYKAFVDNYK---VALETAEKCSQSNNQFQKI----SEELKVKGP 220
>gi|118600977 C3 and PZP-like, alpha-2-macroglobulin domain
containing 8 [Homo sapiens]
Length = 1932
Score = 34.7 bits (78), Expect = 0.24
Identities = 23/41 (56%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 2 GRARPGQRGP---PSPGPAAQP-PAPPRRRARSLALLGALL 38
G AR GP PSPGPA P APPR R S ALL LL
Sbjct: 17 GGARTAALGPWPWPSPGPAPSPGAAPPRSRKMSGALLWPLL 57
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 34.7 bits (78), Expect = 0.24
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 9 RGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61
RGPP GP PP PP + GA AAAAAAA A H + A +Q
Sbjct: 167 RGPPHLGP---PPPPPHQ--GHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQ 214
>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 363
Score = 34.3 bits (77), Expect = 0.31
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 2 GRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61
G++ P P+P P+++PP P RR R L AAA A + + AR
Sbjct: 72 GKSSPPPSAGPTPPPSSRPPPSPPRRRRPAWLQDEAEVAAALAGYGFINPSSTGEGPARP 131
Query: 62 ELALKTLGTDGLFLFSSLDTDG 83
+ +TL G F S+ G
Sbjct: 132 --STQTLRRSGAFPCESVGVPG 151
>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
sapiens]
Length = 363
Score = 34.3 bits (77), Expect = 0.31
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 2 GRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61
G++ P P+P P+++PP P RR R L AAA A + + AR
Sbjct: 72 GKSSPPPSAGPTPPPSSRPPPSPPRRRRPAWLQDEAEVAAALAGYGFINPSSTGEGPARP 131
Query: 62 ELALKTLGTDGLFLFSSLDTDG 83
+ +TL G F S+ G
Sbjct: 132 --STQTLRRSGAFPCESVGVPG 151
>gi|33563376 TBC1 domain family, member 16 [Homo sapiens]
Length = 767
Score = 34.3 bits (77), Expect = 0.31
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 17 AAQPPAPPRRRARSLALLGALLAAAAAAAVR----------VCARHAEAQAAARQELALK 66
A+ P + A+ L + GA A+ A + V E + A +E
Sbjct: 154 ASPAPEDEEKLAQGLGVDGAQPASQPACSPSGILSTVSPQDVTEEGREPRPEAGEEDGSL 213
Query: 67 TLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAASCEEEELPPDPSEETL 122
L +G+ SS D+D D + SP PI+ L S + E + PP S+ L
Sbjct: 214 ELSAEGVSRDSSFDSDSDTFSSPFCLSPISAALAESRGSVFLESDSSPPSSSDAGL 269
>gi|13128980 proline rich 14 [Homo sapiens]
Length = 585
Score = 34.3 bits (77), Expect = 0.31
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 10 GPPSPGPAAQPPAPP---RRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALK 66
GPP PG PPAPP R R R + G +A A R C R ++ L
Sbjct: 338 GPPGPGTCTWPPAPPQPSRPRPRRHTVGGGEMARAPPPP-RPCLR--------KEVFPLG 388
Query: 67 TLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAASCEEEELPPDPSEETLTIEA 126
+G S T + P E P G P AS ++++ +P +T+ +
Sbjct: 389 GVGASPSLTTSCSSTASTSFSEPAE--PRLGSTKGKEPRAS--KDQVLSEPETKTMGKVS 444
Query: 127 RFQ 129
RF+
Sbjct: 445 RFR 447
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 33.9 bits (76), Expect = 0.40
Identities = 61/225 (27%), Positives = 76/225 (33%), Gaps = 34/225 (15%)
Query: 11 PPSPGPAAQP--PAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTL 68
PP P P A P PAPP+R GA A A R+ A K+
Sbjct: 1147 PPPPRPVAPPTRPAPPQRPPPP---SGARSPAPTRKEFGGIGAPPSPGVARREMEAPKSP 1203
Query: 69 GTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAA-SCEEEELPPDP---SEETLTI 124
GT + D G SP+ L G PA S +PP S
Sbjct: 1204 GT------TRKDNIGRSQPSPQ------AGLAGPGPAGYSTARPTIPPRAGVISAPQSHA 1251
Query: 125 EARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELG 184
A L PE+ +K+ + G + L P A F Q LPPP Q L
Sbjct: 1252 RASAGRLTPESQSKTSETSKGSTFL--------PEPLKPQAAFPP---QSSLPPPAQRLQ 1300
Query: 185 EPWWIIPSELSMFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRP 229
EP ++P M N PP P + H L S +P
Sbjct: 1301 EP--LVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQP 1343
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 33.9 bits (76), Expect = 0.40
Identities = 40/142 (28%), Positives = 51/142 (35%), Gaps = 26/142 (18%)
Query: 11 PPSPGPA---AQPPAPPRRRAR------SLALLGALLAAAAAAAVRVCA----------- 50
PP PGP A PP PP R R SLA + AA A AV V A
Sbjct: 162 PPPPGPRKARAPPPPPPLRLGRPLSRRLSLASPAWVFNAAVALAVLVAAGLVVSGVYIFF 221
Query: 51 --RHAEAQAAARQELALKTLGTDGLFLFSSLDTDGDMYI---SPEEFKPIAEKLTGSTPA 105
HA + R +L + G F G + +P P + T
Sbjct: 222 LIPHATSSGPPRPQL-VALAPAPGFSWFPPRPPPGSPWAPAWTPRPTGPDLDTALPGTAE 280
Query: 106 ASCEEEELPPDPSEETLTIEAR 127
+ E E P DP+E T++ R
Sbjct: 281 DALEPEAGPEDPAEAERTLDRR 302
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 33.9 bits (76), Expect = 0.40
Identities = 40/142 (28%), Positives = 51/142 (35%), Gaps = 26/142 (18%)
Query: 11 PPSPGPA---AQPPAPPRRRAR------SLALLGALLAAAAAAAVRVCA----------- 50
PP PGP A PP PP R R SLA + AA A AV V A
Sbjct: 162 PPPPGPRKARAPPPPPPLRLGRPLSRRLSLASPAWVFNAAVALAVLVAAGLVVSGVYIFF 221
Query: 51 --RHAEAQAAARQELALKTLGTDGLFLFSSLDTDGDMYI---SPEEFKPIAEKLTGSTPA 105
HA + R +L + G F G + +P P + T
Sbjct: 222 LIPHATSSGPPRPQL-VALAPAPGFSWFPPRPPPGSPWAPAWTPRPTGPDLDTALPGTAE 280
Query: 106 ASCEEEELPPDPSEETLTIEAR 127
+ E E P DP+E T++ R
Sbjct: 281 DALEPEAGPEDPAEAERTLDRR 302
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 33.9 bits (76), Expect = 0.40
Identities = 40/142 (28%), Positives = 51/142 (35%), Gaps = 26/142 (18%)
Query: 11 PPSPGPA---AQPPAPPRRRAR------SLALLGALLAAAAAAAVRVCA----------- 50
PP PGP A PP PP R R SLA + AA A AV V A
Sbjct: 162 PPPPGPRKARAPPPPPPLRLGRPLSRRLSLASPAWVFNAAVALAVLVAAGLVVSGVYIFF 221
Query: 51 --RHAEAQAAARQELALKTLGTDGLFLFSSLDTDGDMYI---SPEEFKPIAEKLTGSTPA 105
HA + R +L + G F G + +P P + T
Sbjct: 222 LIPHATSSGPPRPQL-VALAPAPGFSWFPPRPPPGSPWAPAWTPRPTGPDLDTALPGTAE 280
Query: 106 ASCEEEELPPDPSEETLTIEAR 127
+ E E P DP+E T++ R
Sbjct: 281 DALEPEAGPEDPAEAERTLDRR 302
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 33.5 bits (75), Expect = 0.53
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 6 PGQRGPPSPGPAAQPPAPPRRR 27
PGQ GPP P A PP PP +R
Sbjct: 1353 PGQPGPPGPSGEAGPPGPPGKR 1374
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 33.5 bits (75), Expect = 0.53
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 6 PGQRGPPSPGPAAQPPAPPRRR 27
PGQ GPP P A PP PP +R
Sbjct: 1302 PGQPGPPGPSGEAGPPGPPGKR 1323
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 33.5 bits (75), Expect = 0.53
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 6 PGQRGPPSPGPAAQPPAPPRRR 27
PGQ GPP P A PP PP +R
Sbjct: 1341 PGQPGPPGPSGEAGPPGPPGKR 1362
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 33.5 bits (75), Expect = 0.53
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 2 GRARPGQRGPPSPGPAA-------QPPAPPRRRAR-----SLALLGALLAAAAAAAVRVC 49
GRARPG GP PGP + PAPP + R S + AAAA AA
Sbjct: 93 GRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEP 152
Query: 50 ARHAEAQAAARQELALK 66
A A+ A LA +
Sbjct: 153 APAGPAKPAGPAALAAR 169
Score = 30.4 bits (67), Expect = 4.4
Identities = 49/183 (26%), Positives = 64/183 (34%), Gaps = 27/183 (14%)
Query: 4 ARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAA--VRVCARHAEAQAAARQ 61
ARP G P+ P A P PP A++ GA A A AA V + AAA
Sbjct: 281 ARPP--GHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAP 338
Query: 62 ELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSTPAASCEEEELPPDPSEET 121
+K + + P A+ L S PA++ + P +
Sbjct: 339 APGVKAESPKRVV---------------QAAPPAAQTLAASGPASTAASMVIGP-TMQGA 382
Query: 122 LTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFAT---RHFQPFLPP 178
L A P P T T G G +LS T A+ S + AT P LP
Sbjct: 383 LPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSR----TPTATTSGIRATLTPTVLAPRLPQ 438
Query: 179 PGQ 181
P Q
Sbjct: 439 PPQ 441
>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
sapiens]
Length = 516
Score = 33.5 bits (75), Expect = 0.53
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 15 GPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGL 73
G A PP P A L A AAAAA ++ A+ A A AA L TLGT GL
Sbjct: 257 GKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA-----VLGTLGTPGL 310
>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
sapiens]
Length = 542
Score = 33.5 bits (75), Expect = 0.53
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 15 GPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGL 73
G A PP P A L A AAAAA ++ A+ A A AA L TLGT GL
Sbjct: 283 GKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA-----VLGTLGTPGL 336
>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
sapiens]
Length = 559
Score = 33.5 bits (75), Expect = 0.53
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 15 GPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGL 73
G A PP P A L A AAAAA ++ A+ A A AA L TLGT GL
Sbjct: 300 GKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA-----VLGTLGTPGL 353
>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
sapiens]
Length = 245
Score = 33.1 bits (74), Expect = 0.69
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 3 RARPGQRGPPSPGPAAQP-PAPPRRRARSLALLG 35
+ +PG + P P P+AQP P PP RR S L+G
Sbjct: 148 KIQPGVQRLPRPTPSAQPRPGPPERRRASRPLIG 181
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 33.1 bits (74), Expect = 0.69
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 6 PGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAA 44
P Q P PGP PP PPR LL + AAAAAA
Sbjct: 221 PAQTPPYRPGPP-DPPPPPRHLPTQFNLLASSSAAAAAA 258
>gi|154813191 IQ motif containing E isoform 1 [Homo sapiens]
Length = 695
Score = 32.7 bits (73), Expect = 0.90
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 29 RSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGLFLFSSLDTDGDMYIS 88
R L + L A A CAR E + R+E+ + + T L S L +M
Sbjct: 414 RDLEVKQLLQAKADLEKELECAREGEEERREREEVLREEIQT----LTSKLQELQEMKKE 469
Query: 89 PEEFKPI----AEKLTGSTPAASCEEEELPPDPSEETL 122
+E P A++L TP++ E++ PPD SEE L
Sbjct: 470 EKEDCPEVPHKAQELPAPTPSSRHCEQDWPPDSSEEGL 507
>gi|38194229 kelch-like 17 [Homo sapiens]
Length = 642
Score = 32.7 bits (73), Expect = 0.90
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 2 GRARPGQRGPPSPGPAAQPPAPPR 25
GR + + G P PGP A PP PP+
Sbjct: 10 GRTQSPEHGSPGPGPEAPPPPPPQ 33
>gi|154813193 IQ motif containing E isoform 2 [Homo sapiens]
Length = 679
Score = 32.7 bits (73), Expect = 0.90
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 29 RSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGLFLFSSLDTDGDMYIS 88
R L + L A A CAR E + R+E+ + + T L S L +M
Sbjct: 398 RDLEVKQLLQAKADLEKELECAREGEEERREREEVLREEIQT----LTSKLQELQEMKKE 453
Query: 89 PEEFKPI----AEKLTGSTPAASCEEEELPPDPSEETL 122
+E P A++L TP++ E++ PPD SEE L
Sbjct: 454 EKEDCPEVPHKAQELPAPTPSSRHCEQDWPPDSSEEGL 491
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,039,761
Number of Sequences: 37866
Number of extensions: 1300175
Number of successful extensions: 10299
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 9721
Number of HSP's gapped (non-prelim): 605
length of query: 556
length of database: 18,247,518
effective HSP length: 107
effective length of query: 449
effective length of database: 14,195,856
effective search space: 6373939344
effective search space used: 6373939344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.