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Search of human proteins with 47458048
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47458048 hemojuvelin isoform a precursor [Homo sapiens]
(426 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47458048 hemojuvelin isoform a precursor [Homo sapiens] 875 0.0
gi|44662823 hemojuvelin isoform b [Homo sapiens] 644 0.0
gi|42544157 hemojuvelin isoform c [Homo sapiens] 399 e-111
gi|47458050 hemojuvelin isoform c [Homo sapiens] 399 e-111
gi|24308189 RGM domain family, member A [Homo sapiens] 366 e-101
gi|224589135 RGM domain family, member B [Homo sapiens] 329 3e-90
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 42 0.001
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 41 0.002
gi|109452587 family with sequence similarity 98, member B isofor... 39 0.012
gi|238859557 regulatory factor X1 [Homo sapiens] 38 0.015
gi|125987596 sodium bicarbonate transporter 4 isoform a [Homo sa... 38 0.015
gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo sap... 38 0.015
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 38 0.015
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 38 0.015
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 38 0.015
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 38 0.015
gi|24308309 transmembrane protein 163 [Homo sapiens] 38 0.020
gi|12056465 fibrillarin [Homo sapiens] 37 0.026
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 37 0.026
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 37 0.026
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 37 0.026
gi|24497620 signal recognition particle 68kDa [Homo sapiens] 37 0.026
gi|84570137 homeobox B3 [Homo sapiens] 37 0.026
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 37 0.034
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 37 0.034
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 37 0.034
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 37 0.034
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens] 37 0.034
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 37 0.034
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 37 0.034
>gi|47458048 hemojuvelin isoform a precursor [Homo sapiens]
Length = 426
Score = 875 bits (2262), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MGEPGQSPSPRSSHGSPPTLSTLTLLLLLCGHAHSQCKILRCNAEYVSSTLSLRGGGSSG 60
MGEPGQSPSPRSSHGSPPTLSTLTLLLLLCGHAHSQCKILRCNAEYVSSTLSLRGGGSSG
Sbjct: 1 MGEPGQSPSPRSSHGSPPTLSTLTLLLLLCGHAHSQCKILRCNAEYVSSTLSLRGGGSSG 60
Query: 61 ALRGGGGGGRGGGVGSGGLCRALRSYALCTRRTARTCRGDLAFHSAVHGIEDLMIQHNCS 120
ALRGGGGGGRGGGVGSGGLCRALRSYALCTRRTARTCRGDLAFHSAVHGIEDLMIQHNCS
Sbjct: 61 ALRGGGGGGRGGGVGSGGLCRALRSYALCTRRTARTCRGDLAFHSAVHGIEDLMIQHNCS 120
Query: 121 RQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDPHVRSFHH 180
RQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDPHVRSFHH
Sbjct: 121 RQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDPHVRSFHH 180
Query: 181 HFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQKVYQAEV 240
HFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQKVYQAEV
Sbjct: 181 HFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQKVYQAEV 240
Query: 241 DNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQLSFSIKV 300
DNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQLSFSIKV
Sbjct: 241 DNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQLSFSIKV 300
Query: 301 AEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPVEDAYFHS 360
AEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPVEDAYFHS
Sbjct: 301 AEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPVEDAYFHS 360
Query: 361 CVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAPLLSGLFV 420
CVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAPLLSGLFV
Sbjct: 361 CVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAPLLSGLFV 420
Query: 421 LWLCIQ 426
LWLCIQ
Sbjct: 421 LWLCIQ 426
>gi|44662823 hemojuvelin isoform b [Homo sapiens]
Length = 313
Score = 644 bits (1662), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 114 MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDP 173
MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDP
Sbjct: 1 MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRFSRLHGRPPGFLHCASFGDP 60
Query: 174 HVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQ 233
HVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQ
Sbjct: 61 HVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQ 120
Query: 234 KVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQ 293
KVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQ
Sbjct: 121 KVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQ 180
Query: 294 LSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPV 353
LSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPV
Sbjct: 181 LSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRLCKEGLPV 240
Query: 354 EDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAP 413
EDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAP
Sbjct: 241 EDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLSSATLLAP 300
Query: 414 LLSGLFVLWLCIQ 426
LLSGLFVLWLCIQ
Sbjct: 301 LLSGLFVLWLCIQ 313
>gi|42544157 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 399 bits (1024), Expect = e-111
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 227 MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII 286
MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII
Sbjct: 1 MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII 60
Query: 287 IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL 346
IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL
Sbjct: 61 IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL 120
Query: 347 CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS 406
CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS
Sbjct: 121 CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS 180
Query: 407 SATLLAPLLSGLFVLWLCIQ 426
SATLLAPLLSGLFVLWLCIQ
Sbjct: 181 SATLLAPLLSGLFVLWLCIQ 200
>gi|47458050 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 399 bits (1024), Expect = e-111
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 227 MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII 286
MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII
Sbjct: 1 MQECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTII 60
Query: 287 IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL 346
IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL
Sbjct: 61 IRQTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAITIDTARRL 120
Query: 347 CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS 406
CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS
Sbjct: 121 CKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDAGVPLS 180
Query: 407 SATLLAPLLSGLFVLWLCIQ 426
SATLLAPLLSGLFVLWLCIQ
Sbjct: 181 SATLLAPLLSGLFVLWLCIQ 200
>gi|24308189 RGM domain family, member A [Homo sapiens]
Length = 450
Score = 366 bits (939), Expect = e-101
Identities = 208/432 (48%), Positives = 261/432 (60%), Gaps = 52/432 (12%)
Query: 24 TLLLLLCGH--AHSQCKILRCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGGLCR 81
TL LLC A S CKIL+CN+E+ S+T G + C
Sbjct: 33 TLAFLLCSFPAATSPCKILKCNSEFWSAT---------------SGSHAPASDDTPEFCA 77
Query: 82 ALRSYALCTRRTARTCRGDLAFHSAVHGIEDLMIQHNCSRQGPTAPPPPRGPALPGAGSG 141
ALRSYALCTRRTARTCRGDLA+HSAVHGIEDLM QHNCS+ GPT+ P R LP AG
Sbjct: 78 ALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMSQHNCSKDGPTSQPRLR--TLPPAGDS 135
Query: 142 ---LPAPDPCDYEGRFSRLHGRPPGFLHCASFGDPHVRSFHHHFHTCRVQGAWPLLDNDF 198
+P+ C YE F + H P + HC FGDPH+R+F F TC+VQGAWPL+DN++
Sbjct: 136 QERSDSPEICHYEKSFHK-HSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNY 194
Query: 199 LFVQATSSPMALGANATATRKLTIIFKNMQECIDQKVYQAEVDNLPVAFEDGSINGGDRP 258
L VQAT++P+ G+ ATAT KLTIIFKN QEC+DQKVYQAE+D LP AF DGS NGGD+
Sbjct: 195 LNVQATNTPVLPGSAATATSKLTIIFKNFQECVDQKVYQAEMDELPAAFVDGSKNGGDKH 254
Query: 259 GGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQLSFSIKVAEDVAMAFS--AEQDLQL 316
G +SL I G HVEIQA YIGTTI++RQ L+F++++ E+V A Q L L
Sbjct: 255 GANSLKITEKVSGQHVEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDWDSQGLYL 314
Query: 317 CVGGCPPSQRL--SRSERNRRG-----------------AITIDTARRLCKEGLPVEDAY 357
C+ GCP +Q++ N G +TA CKE LPVED Y
Sbjct: 315 CLRGCPLNQQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCKEKLPVEDLY 374
Query: 358 FHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFP--------SDAGVPLSSAT 409
+ +CVFD+L +GD NFT+AA ALED + + +KLHL+ + AG+PL+
Sbjct: 375 YQACVFDLLTTGDVNFTLAAYYALEDVKMLHSNKDKLHLYERTRDLPGRAAAGLPLAPRP 434
Query: 410 LLAPLLSGLFVL 421
LL L+ L +L
Sbjct: 435 LLGALVPLLALL 446
>gi|224589135 RGM domain family, member B [Homo sapiens]
Length = 478
Score = 329 bits (844), Expect = 3e-90
Identities = 190/444 (42%), Positives = 252/444 (56%), Gaps = 58/444 (13%)
Query: 11 RSSHGSPPTLSTLTLLLLLCGHAHS-------QCKILRCNAEYVSSTLSLRGGGSSGALR 63
RS PP L L LLL G H+ QC+I +C ++VS T L + A+
Sbjct: 62 RSPGLCPPPLELLLLLLFSLGLLHAGDCQQPAQCRIQKCTTDFVSLTSHL-----NSAVD 116
Query: 64 GGGGGGRGGGVGSGGLCRALRSYALCTRRTARTCRGDLAFHSAVHGIEDLMIQHNCSRQG 123
G C+ALR+YA CT+RT++ CRG+L +HSAV GI DLM Q NCS+ G
Sbjct: 117 GF----------DSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDG 166
Query: 124 PTAPPPPRGPALPGAGSGLPAPDPCDYEGRF-SRLHGR----PPGFLHCASFGDPHVRSF 178
PT+ P DPC+Y +R H R PP +L C FGDPH+R+F
Sbjct: 167 PTSSTNPE-----------VTHDPCNYHSHAGAREHRRGDQNPPSYLFCGLFGDPHLRTF 215
Query: 179 HHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQKVYQA 238
+F TC+V+GAWPL+DN++L VQ T+ P+ G++ATAT K+TIIFK EC DQKVYQA
Sbjct: 216 KDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNKITIIFKAHHECTDQKVYQA 275
Query: 239 EVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQLSFSI 298
D+LP AF DG+ +GGD SL I G++VE+ A YIGTT+ +RQ L+ +I
Sbjct: 276 VTDDLPAAFVDGTTSGGD-SDAKSLRIVERESGHYVEMHARYIGTTVFVRQVGRYLTLAI 334
Query: 299 KVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAI----------------TIDT 342
++ ED+AM++ QDLQLCV GCP S+R+ + + T++T
Sbjct: 335 RMPEDLAMSYEESQDLQLCVNGCPLSERIDDGQGQVSAILGHSLPRTSLVQAWPGYTLET 394
Query: 343 ARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDA- 401
A C E +PV+D YF SCVFD+L +GD NFT AA +ALED A P E+ H+FPS
Sbjct: 395 ANTQCHEKMPVKDIYFQSCVFDLLTTGDANFTAAAHSALEDVEALHPRKERWHIFPSSGN 454
Query: 402 GVPLSSATLLAPLLSGLFVLWLCI 425
G P + L L GL L L +
Sbjct: 455 GTPRGGSDLSVSL--GLTCLILIV 476
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 37 CKILRCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGGLCRALRSYALCTRRTART 96
C L C++ ++ + + G+ GGGGGG GGG G GG S C+ R+
Sbjct: 387 CSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRS 446
Query: 97 CRGDLAFHSAV 107
G L + +AV
Sbjct: 447 ESGFLPYSAAV 457
Score = 39.3 bits (90), Expect = 0.007
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 9 SPRSSHGSPPTLSTLTLLLLLCGHAHSQCKILRCNAEYVSSTLSLRGGGSSGALRGGGGG 68
S ++ G+PP+ + L C HS A ++ S GGG G GGGGG
Sbjct: 371 SSAAAAGAPPSGGSAPCSCLSC---HSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGG 427
Query: 69 GRGGGVGSGGLCRA 82
G G G GS C A
Sbjct: 428 GAGAGGGSDFGCSA 441
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 41.2 bits (95), Expect = 0.002
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 120 SRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRF---SRLHGRPPGFLHCASFGDPHVR 176
S G P P GP PG+G LPA P ++G +R+ R H H
Sbjct: 940 SSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSPPDTRVGSREKSLYHSGPLPPAHHH 999
Query: 177 SFHHHFH 183
HHH H
Sbjct: 1000 PPHHHHH 1006
Score = 33.1 bits (74), Expect = 0.49
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 49 STLSLRGGGSSGALRGGGGGGRGGGVGSG 77
S+LS GGGS+G GGGG G GV SG
Sbjct: 1698 SSLSAEGGGSAG-----GGGGAGAGVASG 1721
Score = 29.6 bits (65), Expect = 5.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 41 RCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSG 77
R ++++ T+S SS + GGG G GGG G+G
Sbjct: 1681 RSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAG 1717
Score = 29.3 bits (64), Expect = 7.1
Identities = 33/107 (30%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 54 RGGGSS---GALRGGGGGGRGGGVGSGGLCRALRSYALCTR----------RTARTCRGD 100
RGGG S GA G GGG GS ALR + L R R+ R +G
Sbjct: 1051 RGGGPSPTPGAPSPSHHGSAGGGGGSSQ-GPALRYFQLPPRAASAAMYVPARSGRGRKGP 1109
Query: 101 LAFHSAVHGIEDLM--IQHNCSRQGPTAPPPPRGPALPGAGSGLPAP 145
L + V G + S P +P PP A P + +P P
Sbjct: 1110 LVKQTKVEGEPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIP 1156
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 38.5 bits (88), Expect = 0.012
Identities = 17/24 (70%), Positives = 17/24 (70%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGGGGGRGGG G GG
Sbjct: 332 GGGRGGWGGGGGGGGRGGGGGGGG 355
Score = 36.6 bits (83), Expect = 0.045
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGGGGGRGG G GG
Sbjct: 341 GGGGGGRGGGGGGGGRGGWGGGGG 364
Score = 36.2 bits (82), Expect = 0.058
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 54 RGGGSSGALRGG---GGGGRGGGVGSGG 78
RGGG G RGG GGGG GGG G GG
Sbjct: 347 RGGGGGGGGRGGWGGGGGGWGGGGGGGG 374
Score = 35.4 bits (80), Expect = 0.099
Identities = 17/25 (68%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 55 GGGSSGALRGGGGGGRG-GGVGSGG 78
GGG G RGGGGGG G GG G GG
Sbjct: 339 GGGGGGGGRGGGGGGGGRGGWGGGG 363
Score = 35.0 bits (79), Expect = 0.13
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSG 77
GGG G GGGGGGRGG G G
Sbjct: 369 GGGGGGGWGGGGGGGRGGFQGRG 391
Score = 34.7 bits (78), Expect = 0.17
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGGGG GGG G GG
Sbjct: 352 GGGGRGGWGGGGGGWGGGGGGGGG 375
Score = 33.5 bits (75), Expect = 0.38
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGGLCR 81
GG G GGGGGG GGG G GG R
Sbjct: 406 GGRGYGDPYGGGGGGGGGGGGGGGYRR 432
Score = 33.1 bits (74), Expect = 0.49
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGGGGG GG G GG
Sbjct: 360 GGGGGGWGGGGGGGGGWGGGGGGG 383
Score = 32.7 bits (73), Expect = 0.64
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGGG G GGG G GG
Sbjct: 363 GGGWGGGGGGGGGWGGGGGGGRGG 386
Score = 31.2 bits (69), Expect = 1.9
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 54 RGG-GSSGALRGGGGGGRGGGVGSGG 78
RGG G G GGGGGG GG G GG
Sbjct: 356 RGGWGGGGGGWGGGGGGGGGWGGGGG 381
Score = 30.4 bits (67), Expect = 3.2
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGG GG GGG G G
Sbjct: 344 GGGRGGGGGGGGRGGWGGGGGGWG 367
Score = 29.3 bits (64), Expect = 7.1
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 54 RGGGSSGALRGGGGGGRGGGVGSGG 78
RGG G GG GGG GGG G GG
Sbjct: 335 RGGWGGGGGGGGRGGGGGGG-GRGG 358
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 38.1 bits (87), Expect = 0.015
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG----------------LCRALRSYALCTRRTARTCR 98
GGG SG GGGGGG GGG GS G L A +SY+ TR + T +
Sbjct: 381 GGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQ 440
Query: 99 GDLAFHSAVHGI 110
L + G+
Sbjct: 441 WLLDNYETAEGV 452
Score = 35.0 bits (79), Expect = 0.13
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 44 AEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGG 78
++ V+S+ S G S+ + GG GGG GGG G GG
Sbjct: 363 SQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGG 397
Score = 32.7 bits (73), Expect = 0.64
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 48 SSTLSLRGGGSSGALRGGGGGGRGGGVGSGG 78
SST + G +S G GGGG GGG G GG
Sbjct: 368 SSTSTGAGASNSSGGGGSGGGGGGGGGGGGG 398
>gi|125987596 sodium bicarbonate transporter 4 isoform a [Homo
sapiens]
Length = 1137
Score = 38.1 bits (87), Expect = 0.015
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GG G GGGGGG GGG GSGG
Sbjct: 443 GGAPGGGNGGGGGGGSGGGAGSGG 466
Score = 32.7 bits (73), Expect = 0.64
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 56 GGSSGALRGGGGGGRGGGVGSG 77
GG GA GG GGG GGG G G
Sbjct: 440 GGGGGAPGGGNGGGGGGGSGGG 461
Score = 30.8 bits (68), Expect = 2.4
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 43 NAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGG 78
+A+ S SL G GGGGG GGG G GG
Sbjct: 419 SADKRKSVFSLAELGQMNGSVGGGGGAPGGGNGGGG 454
Score = 30.4 bits (67), Expect = 3.2
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG+ G GG GGG G G G+GG
Sbjct: 447 GGGNGGGGGGGSGGGAGSG-GAGG 469
Score = 29.6 bits (65), Expect = 5.5
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 57 GSSGALRGGGGGGRGGGVGSGG 78
G G GGG GG GGG GSGG
Sbjct: 440 GGGGGAPGGGNGGGGGG-GSGG 460
Score = 29.3 bits (64), Expect = 7.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSG 77
GGG G GG G G GG SG
Sbjct: 451 GGGGGGGSGGGAGSGGAGGTSSG 473
>gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo
sapiens]
Length = 1121
Score = 38.1 bits (87), Expect = 0.015
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GG G GGGGGG GGG GSGG
Sbjct: 443 GGAPGGGNGGGGGGGSGGGAGSGG 466
Score = 32.7 bits (73), Expect = 0.64
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 56 GGSSGALRGGGGGGRGGGVGSG 77
GG GA GG GGG GGG G G
Sbjct: 440 GGGGGAPGGGNGGGGGGGSGGG 461
Score = 30.8 bits (68), Expect = 2.4
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 43 NAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGG 78
+A+ S SL G GGGGG GGG G GG
Sbjct: 419 SADKRKSVFSLAELGQMNGSVGGGGGAPGGGNGGGG 454
Score = 30.4 bits (67), Expect = 3.2
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG+ G GG GGG G G G+GG
Sbjct: 447 GGGNGGGGGGGSGGGAGSG-GAGG 469
Score = 29.6 bits (65), Expect = 5.5
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 57 GSSGALRGGGGGGRGGGVGSGG 78
G G GGG GG GGG GSGG
Sbjct: 440 GGGGGAPGGGNGGGGGG-GSGG 460
Score = 29.3 bits (64), Expect = 7.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSG 77
GGG G GG G G GG SG
Sbjct: 451 GGGGGGGSGGGAGSGGAGGTSSG 473
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 38.1 bits (87), Expect = 0.015
Identities = 18/31 (58%), Positives = 18/31 (58%)
Query: 48 SSTLSLRGGGSSGALRGGGGGGRGGGVGSGG 78
SS GG G GGGGGG GGGVG GG
Sbjct: 52 SSPAVRAAGGGGGGGGGGGGGGGGGGVGGGG 82
Score = 34.7 bits (78), Expect = 0.17
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGGGGG GGG GG
Sbjct: 63 GGGGGGGGGGGGGGGVGGGGAGGG 86
Score = 34.3 bits (77), Expect = 0.22
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGGGGG GG G+GG
Sbjct: 62 GGGGGGGGGGGGGGGGVGGGGAGG 85
Score = 33.5 bits (75), Expect = 0.38
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 40 LRCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGG 78
LR E T + R SS A+R GGGG GGG G GG
Sbjct: 34 LRGAKEPTGCTEAGRDDRSSPAVRAAGGGGGGGGGGGGG 72
Score = 33.1 bits (74), Expect = 0.49
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSG 77
GGG G G GGGG GGG G G
Sbjct: 68 GGGGGGGGGGVGGGGAGGGAGGG 90
Score = 32.0 bits (71), Expect = 1.1
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGG GG G G G+GG
Sbjct: 66 GGGGGGGGGGGGVGGGGAGGGAGG 89
Score = 29.3 bits (64), Expect = 7.1
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GG GGG GG GG
Sbjct: 67 GGGGGGGGGGGVGGGGAGGGAGGG 90
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 38.1 bits (87), Expect = 0.015
Identities = 20/38 (52%), Positives = 21/38 (55%), Gaps = 10/38 (26%)
Query: 51 LSLRGGGSSGALRGGGGGG----------RGGGVGSGG 78
+S RGGG G RGGGGGG RGGG G GG
Sbjct: 1 MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGG 38
Score = 35.8 bits (81), Expect = 0.076
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 54 RGGGSSGALRGGGGGGRGGGVGSG 77
RGGG G G GGGGRGGG G G
Sbjct: 169 RGGGRGGRGGGRGGGGRGGGRGGG 192
Score = 35.4 bits (80), Expect = 0.099
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 54 RGGGSSGALRGGGGGGRGGGVGSGG 78
R G G RGGG GGRGGG G GG
Sbjct: 160 RPPGEKGPPRGGGRGGRGGGRGGGG 184
Score = 34.7 bits (78), Expect = 0.17
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 56 GGSSGALRGGGGGGRGGGVGSGG 78
GGSS RGGGGGG GG GG
Sbjct: 23 GGSSNHFRGGGGGGGGGNFRGGG 45
Score = 33.9 bits (76), Expect = 0.29
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G RGGG GG G G G GG
Sbjct: 34 GGGGGGNFRGGGRGGFGRGGGRGG 57
Score = 33.5 bits (75), Expect = 0.38
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 54 RGGGSSGALRGGG-GGGRGGGVGSGG 78
RGGG G RGGG GGG GG G GG
Sbjct: 176 RGGGRGGGGRGGGRGGGFRGGRGGGG 201
Score = 33.5 bits (75), Expect = 0.38
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 54 RGGGSSGALRGGGGGGRGGGVGSGG 78
RGGG G RGG GGG GG G G
Sbjct: 185 RGGGRGGGFRGGRGGGGGGFRGGRG 209
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/23 (69%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 54 RGGGSSGALRGGG-GGGRGGGVG 75
RGGG G RGGG GGRGGG G
Sbjct: 180 RGGGGRGGGRGGGFRGGRGGGGG 202
Score = 30.8 bits (68), Expect = 2.4
Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 54 RGGGSSGALRGGGG---GGRGGGVGSGG 78
RGGG G GGGG GGRGGG G
Sbjct: 189 RGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 29.3 bits (64), Expect = 7.1
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 54 RGGGSSGALRGGGGGG----RGGGVGSGG 78
RGG S+ GGGGGG RGGG G G
Sbjct: 22 RGGSSNHFRGGGGGGGGGNFRGGGRGGFG 50
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 38.1 bits (87), Expect = 0.015
Identities = 20/38 (52%), Positives = 21/38 (55%), Gaps = 10/38 (26%)
Query: 51 LSLRGGGSSGALRGGGGGG----------RGGGVGSGG 78
+S RGGG G RGGGGGG RGGG G GG
Sbjct: 1 MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGG 38
Score = 35.8 bits (81), Expect = 0.076
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 54 RGGGSSGALRGGGGGGRGGGVGSG 77
RGGG G G GGGGRGGG G G
Sbjct: 169 RGGGRGGRGGGRGGGGRGGGRGGG 192
Score = 35.4 bits (80), Expect = 0.099
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 54 RGGGSSGALRGGGGGGRGGGVGSGG 78
R G G RGGG GGRGGG G GG
Sbjct: 160 RPPGEKGPPRGGGRGGRGGGRGGGG 184
Score = 34.7 bits (78), Expect = 0.17
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 56 GGSSGALRGGGGGGRGGGVGSGG 78
GGSS RGGGGGG GG GG
Sbjct: 23 GGSSNHFRGGGGGGGGGNFRGGG 45
Score = 33.9 bits (76), Expect = 0.29
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G RGGG GG G G G GG
Sbjct: 34 GGGGGGNFRGGGRGGFGRGGGRGG 57
Score = 33.5 bits (75), Expect = 0.38
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 54 RGGGSSGALRGGG-GGGRGGGVGSGG 78
RGGG G RGGG GGG GG G GG
Sbjct: 176 RGGGRGGGGRGGGRGGGFRGGRGGGG 201
Score = 33.5 bits (75), Expect = 0.38
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 54 RGGGSSGALRGGGGGGRGGGVGSGG 78
RGGG G RGG GGG GG G G
Sbjct: 185 RGGGRGGGFRGGRGGGGGGFRGGRG 209
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/23 (69%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 54 RGGGSSGALRGGG-GGGRGGGVG 75
RGGG G RGGG GGRGGG G
Sbjct: 180 RGGGGRGGGRGGGFRGGRGGGGG 202
Score = 30.8 bits (68), Expect = 2.4
Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 54 RGGGSSGALRGGGG---GGRGGGVGSGG 78
RGGG G GGGG GGRGGG G
Sbjct: 189 RGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 29.3 bits (64), Expect = 7.1
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 54 RGGGSSGALRGGGGGG----RGGGVGSGG 78
RGG S+ GGGGGG RGGG G G
Sbjct: 22 RGGSSNHFRGGGGGGGGGNFRGGGRGGFG 50
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 38.1 bits (87), Expect = 0.015
Identities = 36/101 (35%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 47 VSSTLSLRGGGSSGALR--GGGGGGRGGGVGSGGLCRALRSYALCTRRTARTCRGDLAFH 104
V++ L+ GGG GA+ GG GG GGG G GG A R G L H
Sbjct: 318 VAAGLAGAGGGGGGAVGAFGGAAGGAGGGGGGGGGAGA--------ERDRGGASGFLTLH 369
Query: 105 SAVHGIEDLMIQHNCSRQGPTAPPPPRGPALPGAGSGLPAP 145
+A ++ + GP APP P PA P A PAP
Sbjct: 370 NAFP--KEAGGGVTVTVTGPPAPPAPAPPA-PSA----PAP 403
Score = 30.4 bits (67), Expect = 3.2
Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 20/95 (21%)
Query: 46 YVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGGLCRALRSYALCTRRTARTCRGDLAFHS 105
Y+ + S L+ GGG G GG G + R L SY RR +R+
Sbjct: 227 YIERSREAHCQSRSDLLKAGGGAGGSGGSGPSAILR-LPSYRFRYRRRSRS--------- 276
Query: 106 AVHGIEDLMIQHNCSRQGPTAPPPPRGPALPGAGS 140
S P+ P GP PG S
Sbjct: 277 ----------SSRSSEPSPSRDASPGGPGGPGFAS 301
>gi|24308309 transmembrane protein 163 [Homo sapiens]
Length = 289
Score = 37.7 bits (86), Expect = 0.020
Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 120 SRQGPTAPPPPRGPALPGAGSGLPAP 145
S QGPT PPPPRG A P A G PAP
Sbjct: 11 SSQGPTVPPPPRGHAPPAAAPG-PAP 35
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 37.4 bits (85), Expect = 0.026
Identities = 17/25 (68%), Positives = 17/25 (68%)
Query: 54 RGGGSSGALRGGGGGGRGGGVGSGG 78
RGGG G RGGGGGG GGG G G
Sbjct: 36 RGGGFRGRGRGGGGGGGGGGGGGRG 60
Score = 33.9 bits (76), Expect = 0.29
Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 54 RGGGSSGALRGGGGGGR-GGGVGSGG 78
RGGG G GGGGGGR GGG SGG
Sbjct: 45 RGGGGGGG--GGGGGGRGGGGFHSGG 68
Score = 32.0 bits (71), Expect = 1.1
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
G G G RG G GG GGG G GG
Sbjct: 33 GRGRGGGFRGRGRGGGGGGGGGGG 56
Score = 31.6 bits (70), Expect = 1.4
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 54 RGGGSSGALRGGG------GGGRGGGVGSGG 78
RGG G RGGG GGG GGG G GG
Sbjct: 27 RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGG 57
Score = 30.4 bits (67), Expect = 3.2
Identities = 18/30 (60%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 54 RGG-GSSGALRGGGGG----GRGGGVGSGG 78
RGG G G RG GGG GRGGG G GG
Sbjct: 24 RGGRGGFGGGRGRGGGFRGRGRGGGGGGGG 53
Score = 28.9 bits (63), Expect = 9.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSG 77
GGG G RGGGG GG G G
Sbjct: 51 GGGGGGGGRGGGGFHSGGNRGRG 73
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 37.4 bits (85), Expect = 0.026
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGGLCRALRSYALCTRRTARTCRGDLAF----HSAVHGI 110
GGG G GGGGG GGG G G L S R C + H+A++G
Sbjct: 33 GGGGGGGSGGGGGGSGGGGGGLGSSSHPLSSLLSMWRGPNVNCVDSTGYTPLHHAALNGH 92
Query: 111 EDLM 114
+D++
Sbjct: 93 KDVV 96
Score = 30.4 bits (67), Expect = 3.2
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 53 LRGGGSSGALRGGGGGGRGGGVGSGG 78
L G S GGGGGG GGG G G
Sbjct: 23 LSGKRLSSGFGGGGGGGSGGGGGGSG 48
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 37.4 bits (85), Expect = 0.026
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 32 HAHSQCKILRCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGGLCRALRSYALC 89
H S C + L + GG G GGGGGG GGG G C A S ALC
Sbjct: 3483 HLKSLCFFGQSVVNLQEMVLHVPTGGGGGGSGGGGGGGGGGGGGGSYHCLACES-ALC 3539
>gi|154091020 leucine-rich repeats and calponin homology (CH)
domain containing 2 [Homo sapiens]
Length = 765
Score = 37.4 bits (85), Expect = 0.026
Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 55 GGGSSGAL--RGGGGGGRGGGVGSGG 78
GGGSSG GGGGGG GGG G GG
Sbjct: 18 GGGSSGGCGTAGGGGGGAGGGGGGGG 43
Score = 29.6 bits (65), Expect = 5.5
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG+SG G GGGG GG G+ G
Sbjct: 7 GGGNSGG-GGCGGGGSSGGCGTAG 29
>gi|24497620 signal recognition particle 68kDa [Homo sapiens]
Length = 627
Score = 37.4 bits (85), Expect = 0.026
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG SG G GGGG GGG G+GG
Sbjct: 12 GGGGSGGGGGSGGGGSGGGRGAGG 35
Score = 32.3 bits (72), Expect = 0.84
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 64 GGGGGGRGGGVGSGG 78
GGGGGG GGG GSGG
Sbjct: 10 GGGGGGSGGGGGSGG 24
Score = 31.2 bits (69), Expect = 1.9
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 56 GGSSGALRGGGGGGRGGGVGSG 77
GG G GGGGG GGG G G
Sbjct: 9 GGGGGGGSGGGGGSGGGGSGGG 30
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 37.4 bits (85), Expect = 0.026
Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 2 GEPGQSPSPRSSHGSPPTLSTLTLLLLLCGHAHSQCKILRCNAEYVSSTLSLRGGGSSGA 61
G P +S P+ P T STLT + Q L+ N+ + GGG G
Sbjct: 107 GGPSKSGPPKCG---PGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGG 163
Query: 62 LRGGGGGGRGGGVGSGGLCRALRSYALCTRRTART 96
G GG G GGG G GG S A RTA T
Sbjct: 164 --GSGGSGGGGGGGGGGDKSPPGSAASKRARTAYT 196
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 37.0 bits (84), Expect = 0.034
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 56 GGSSGALRGGGGGGRGGGVGSGGLCRALRSY 86
GG G GGGGGG GGG G GG A+ Y
Sbjct: 451 GGGGGGGGGGGGGGGGGGGGGGGEAGAVAPY 481
Score = 32.0 bits (71), Expect = 1.1
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 57 GSSGALRGGGGGGRGGGVGSGG 78
G G GGGGGG GGG G GG
Sbjct: 448 GPCGGGGGGGGGGGGGGGGGGG 469
Score = 31.2 bits (69), Expect = 1.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGGLCR 81
GGG G GGGGGG G V G R
Sbjct: 459 GGGGGGGGGGGGGGGEAGAVAPYGYTR 485
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 37.0 bits (84), Expect = 0.034
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 54 RGGGSSGALRGGGGG-GRGGGVGSG---GLCRALRSYALCTRRTARTCRGDLAFHSAVHG 109
RG LRGGGGG G VGSG G+ ++ ++AL TRR +R R
Sbjct: 297 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRG---- 352
Query: 110 IEDLMIQHNCSRQGPTAPPPPRGPALPGAGSGLPA 144
+ H P PPR P++ G L A
Sbjct: 353 -----VPHFRPLSSPAPQSPPRSPSVRAFGPRLGA 382
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 37.0 bits (84), Expect = 0.034
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 54 RGGGSSGALRGGGGG-GRGGGVGSG---GLCRALRSYALCTRRTARTCRGDLAFHSAVHG 109
RG LRGGGGG G VGSG G+ ++ ++AL TRR +R R
Sbjct: 395 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRG---- 450
Query: 110 IEDLMIQHNCSRQGPTAPPPPRGPALPGAGSGLPA 144
+ H P PPR P++ G L A
Sbjct: 451 -----VPHFRPLSSPAPQSPPRSPSVRAFGPRLGA 480
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 37.0 bits (84), Expect = 0.034
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 54 RGGGSSGALRGGGGG-GRGGGVGSG---GLCRALRSYALCTRRTARTCRGDLAFHSAVHG 109
RG LRGGGGG G VGSG G+ ++ ++AL TRR +R R
Sbjct: 395 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRG---- 450
Query: 110 IEDLMIQHNCSRQGPTAPPPPRGPALPGAGSGLPA 144
+ H P PPR P++ G L A
Sbjct: 451 -----VPHFRPLSSPAPQSPPRSPSVRAFGPRLGA 480
>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
Length = 496
Score = 37.0 bits (84), Expect = 0.034
Identities = 36/107 (33%), Positives = 42/107 (39%), Gaps = 24/107 (22%)
Query: 57 GSSGALRGGGGGGRGGGVGSGGLCRALRSYA------LCTRRTARTCRG-DLAFHSAVH- 108
G SGA G G G G G+GS GL A + A C R G +LA H A H
Sbjct: 164 GGSGAGGGEGPEGAGAGLGSWGLAEAAAAAAASLPPFACGACARRFDHGRELAAHWAAHT 223
Query: 109 --------------GIEDLMIQHNCSR--QGPTAPPPPRGPALPGAG 139
L+ +H + QGP APP A PGAG
Sbjct: 224 DVKPFKCPRCERDFNAPALLERHKLTHDLQGPGAPPAQAWAAGPGAG 270
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 37.0 bits (84), Expect = 0.034
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 31 GHAHSQCKILRCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGG 78
G+ +SQC Y + GGG G GGGGGG GGG G GG
Sbjct: 231 GYPNSQCN------HYPGYSRPGAGGGGGGG--GGGGGGSGGGGGGGG 270
Score = 36.6 bits (83), Expect = 0.045
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G G GGGG GGG G+GG
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGG 275
Score = 34.7 bits (78), Expect = 0.17
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 55 GGGSSGALRGGGGGGRG-GGVGSGGLCRALRSYA 87
GGG G+ GGGGGG G GG G+G + A + A
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAA 289
Score = 34.3 bits (77), Expect = 0.22
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGGGGG G G G G
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGGAG 277
Score = 33.5 bits (75), Expect = 0.38
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 41 RCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSG 77
+CN S GGG G GGG GG GGG G+G
Sbjct: 236 QCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 37.0 bits (84), Expect = 0.034
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 31 GHAHSQCKILRCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSGG 78
G+ +SQC Y + GGG G GGGGGG GGG G GG
Sbjct: 231 GYPNSQCN------HYPGYSRPGAGGGGGGG--GGGGGGSGGGGGGGG 270
Score = 36.6 bits (83), Expect = 0.045
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G G GGGG GGG G+GG
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGG 275
Score = 34.7 bits (78), Expect = 0.17
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 55 GGGSSGALRGGGGGGRG-GGVGSGGLCRALRSYA 87
GGG G+ GGGGGG G GG G+G + A + A
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAA 289
Score = 34.3 bits (77), Expect = 0.22
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 55 GGGSSGALRGGGGGGRGGGVGSGG 78
GGG G GGGGGG G G G G
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGGAG 277
Score = 33.5 bits (75), Expect = 0.38
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 41 RCNAEYVSSTLSLRGGGSSGALRGGGGGGRGGGVGSG 77
+CN S GGG G GGG GG GGG G+G
Sbjct: 236 QCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,732,601
Number of Sequences: 37866
Number of extensions: 1091990
Number of successful extensions: 15654
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 10179
Number of HSP's gapped (non-prelim): 3679
length of query: 426
length of database: 18,247,518
effective HSP length: 105
effective length of query: 321
effective length of database: 14,271,588
effective search space: 4581179748
effective search space used: 4581179748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.