Guide to the Human Genome
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Name: TMEM163 Sequence: fasta or formatted (289aa) NCBI GI: 24308309
Description:

transmembrane protein 163

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         29           3
 C cysteine            1.0          3           1
 D aspartate           3.8         11           2
 E glutamate           4.8         14           3
 F phenylalanine       5.2         15           1
 G glycine             6.6         19           2
 H histidine           2.4          7           1
 I isoleucine          7.3         21           2
 K lysine              2.8          8           2
 L leucine            11.8         34           2
 M methionine          2.1          6           1
 N asparagine          1.0          3           1
 P proline             5.9         17           4
 Q glutamine           2.4          7           1
 R arginine            5.9         17           2
 S serine             10.7         31           2
 T threonine           3.1          9           1
 V valine              9.3         27           2
 W tryptophan          1.4          4           1
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 163 
PKN3                  0.028   protein kinase PKNbeta 
CDKN1C                0.024   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.024   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.024   cyclin-dependent kinase inhibitor 1C isoform a 
HFE2                  0.024   hemojuvelin isoform b 
HFE2                  0.024   hemojuvelin isoform a precursor 
ESPN                  0.022   espin 
LMTK3                 0.022   lemur tyrosine kinase 3 
MN1                   0.020   meningioma  1 
MYO1F                 0.020   myosin IF 
SFPQ                  0.020   splicing factor proline/glutamine rich (polypyrimidin...
KIF13B                0.020   kinesin family member 13B 
SHANK3                0.019   SH3 and multiple ankyrin repeat domains 3 
PCLO                  0.019   piccolo isoform 2 
PCLO                  0.019   piccolo isoform 1 
PTPN23                0.019   protein tyrosine phosphatase, non-receptor type 23 [...
WIPF3                 0.019   WAS/WASL interacting protein family, member 3 [Homo...
PCGF6                 0.019   polycomb group ring finger 6 isoform a 
PCGF6                 0.019   polycomb group ring finger 6 isoform b 
COL2A1                0.019   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.019   collagen, type II, alpha 1 isoform 2 precursor [Hom...
SYN2                  0.019   synapsin II isoform IIa 
MYST3                 0.019   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.019   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.019   MYST histone acetyltransferase (monocytic leukemia)...
SYN2                  0.019   synapsin II isoform IIb 
SAMD1                 0.019   sterile alpha motif domain containing 1 
WASF3                 0.019   WAS protein family, member 3 
APBB1IP               0.017   amyloid beta (A4) precursor protein-binding, family ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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