Guide to the Human Genome
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Name: HFE2 Sequence: fasta or formatted (313aa) NCBI GI: 44662823
Description:

hemojuvelin isoform b

Referenced in:

Iron, Copper, and Arsenic Metabolism

Other entries for this name:
alt prot [200aa] hemojuvelin isoform c
alt prot [426aa] hemojuvelin isoform a precursor
alt prot [200aa] hemojuvelin isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         33           2
 C cysteine            3.2         10           1
 D aspartate           5.8         18           1
 E glutamate           3.8         12           1
 F phenylalanine       5.4         17           1
 G glycine             8.3         26           2
 H histidine           3.5         11           3
 I isoleucine          5.1         16           3
 K lysine              1.9          6           1
 L leucine             9.9         31           2
 M methionine          1.3          4           1
 N asparagine          3.2         10           1
 P proline             8.3         26           4
 Q glutamine           5.1         16           1
 R arginine            5.8         18           2
 S serine              7.3         23           2
 T threonine           4.5         14           2
 V valine              5.1         16           1
 W tryptophan          0.6          2           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hemojuvelin isoform b 
HFE2                  1.000   hemojuvelin isoform a precursor 
HFE2                  0.604   hemojuvelin isoform c 
HFE2                  0.604   hemojuvelin isoform c 
RGMA                  0.418   RGM domain family, member A 
RGMB                  0.391   RGM domain family, member B 
SHANK1                0.026   SH3 and multiple ankyrin repeat domains 1 
TMEM163               0.021   transmembrane protein 163 
COL13A1               0.016   alpha 1 type XIII collagen isoform 20 
COL13A1               0.016   alpha 1 type XIII collagen isoform 19 
COL13A1               0.016   alpha 1 type XIII collagen isoform 18 
COL13A1               0.016   alpha 1 type XIII collagen isoform 17 
COL13A1               0.016   alpha 1 type XIII collagen isoform 16 
COL13A1               0.016   alpha 1 type XIII collagen isoform 15 
COL13A1               0.016   alpha 1 type XIII collagen isoform 14 
COL13A1               0.016   alpha 1 type XIII collagen isoform 13 
COL13A1               0.016   alpha 1 type XIII collagen isoform 12 
COL13A1               0.016   alpha 1 type XIII collagen isoform 11 
COL13A1               0.016   alpha 1 type XIII collagen isoform 10 
COL13A1               0.016   alpha 1 type XIII collagen isoform 9 
COL13A1               0.016   alpha 1 type XIII collagen isoform 7 
COL13A1               0.016   alpha 1 type XIII collagen isoform 6 
COL13A1               0.016   alpha 1 type XIII collagen isoform 5 
COL13A1               0.016   alpha 1 type XIII collagen isoform 4 
COL13A1               0.016   alpha 1 type XIII collagen isoform 3 
COL13A1               0.016   alpha 1 type XIII collagen isoform 2 
COL13A1               0.016   alpha 1 type XIII collagen isoform 1 
COL13A1               0.016   alpha 1 type XIII collagen isoform 8 
WAS                   0.013   Wiskott-Aldrich syndrome protein 
LOC440829             0.013   PREDICTED: transmembrane protein 46-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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