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Search of human proteins with 46255041
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46255041 retinoic acid receptor responder (tazarotene
induced) 1 isoform 2 [Homo sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46255041 retinoic acid receptor responder (tazarotene induced... 469 e-133
gi|46255043 retinoic acid receptor responder (tazarotene induced... 462 e-130
gi|194473714 latexin [Homo sapiens] 79 3e-15
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 38 0.008
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 35 0.053
gi|5453810 netrin 3 [Homo sapiens] 35 0.053
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 34 0.090
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 34 0.090
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 34 0.090
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 34 0.090
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 33 0.15
gi|20070228 nucleobindin 1 [Homo sapiens] 33 0.15
gi|72534680 sex comb on midleg 1 isoform 1 [Homo sapiens] 33 0.26
gi|6912642 sex comb on midleg 1 isoform 2 [Homo sapiens] 33 0.26
gi|153792351 ADAM metallopeptidase with thrombospondin type 1 mo... 33 0.26
gi|118402590 myosin XV [Homo sapiens] 32 0.34
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 32 0.34
gi|31377697 glycosyltransferase 25 domain containing 1 [Homo sap... 32 0.34
gi|46411172 muscleblind-like 1 isoform f [Homo sapiens] 32 0.34
gi|139394668 TBC1 domain family, member 9 (with GRAM domain) [Ho... 32 0.45
gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens] 32 0.59
gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo sap... 32 0.59
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 32 0.59
gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens] 32 0.59
gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens] 32 0.59
gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens] 32 0.59
gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens] 32 0.59
gi|5031975 p21-activated kinase 4 isoform 1 [Homo sapiens] 32 0.59
gi|46488919 astrotactin 2 isoform c [Homo sapiens] 31 1.00
gi|46488917 astrotactin 2 isoform b [Homo sapiens] 31 1.00
>gi|46255041 retinoic acid receptor responder (tazarotene induced) 1
isoform 2 [Homo sapiens]
Length = 228
Score = 469 bits (1207), Expect = e-133
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MQPRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQ 60
MQPRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQ
Sbjct: 1 MQPRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQ 60
Query: 61 QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE 120
QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE
Sbjct: 61 QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE 120
Query: 121 GRLGKCSARVFFKNQKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQLKNPLEIVSIPDN 180
GRLGKCSARVFFKNQKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQLKNPLEIVSIPDN
Sbjct: 121 GRLGKCSARVFFKNQKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQLKNPLEIVSIPDN 180
Query: 181 HGHIDPSLRLIWDLAFLGSSYVMWEMTTQVSHYYLAQLTSVRQWVRKT 228
HGHIDPSLRLIWDLAFLGSSYVMWEMTTQVSHYYLAQLTSVRQWVRKT
Sbjct: 181 HGHIDPSLRLIWDLAFLGSSYVMWEMTTQVSHYYLAQLTSVRQWVRKT 228
>gi|46255043 retinoic acid receptor responder (tazarotene induced) 1
isoform 1 [Homo sapiens]
Length = 294
Score = 462 bits (1188), Expect = e-130
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MQPRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQ 60
MQPRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQ
Sbjct: 1 MQPRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQ 60
Query: 61 QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE 120
QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE
Sbjct: 61 QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE 120
Query: 121 GRLGKCSARVFFKNQKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQLKNPLEIVSIPDN 180
GRLGKCSARVFFKNQKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQLKNPLEIVSIPDN
Sbjct: 121 GRLGKCSARVFFKNQKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQLKNPLEIVSIPDN 180
Query: 181 HGHIDPSLRLIWDLAFLGSSYVMWEMTTQVSHYYLAQLTSVRQW 224
HGHIDPSLRLIWDLAFLGSSYVMWEMTTQVSHYYLAQLTSVRQW
Sbjct: 181 HGHIDPSLRLIWDLAFLGSSYVMWEMTTQVSHYYLAQLTSVRQW 224
>gi|194473714 latexin [Homo sapiens]
Length = 222
Score = 79.0 bits (193), Expect = 3e-15
Identities = 44/165 (26%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 61 QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE 120
+AA A ++ N++ G+P + + +V++ P G K H+ F+ E + +
Sbjct: 12 RAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYHLKFAVEEIIQKQVKVN-- 69
Query: 121 GRLGKCSARVFFKN--QKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQLKNPLEIVSIP 178
C+A V + + Q+ P +N T K +ED Y+++K +K PLE +IP
Sbjct: 70 -----CTAEVLYPSTGQETAPEVNFTFEGETGKNP-DEEDNTFYQRLKSMKEPLEAQNIP 123
Query: 179 DNHGHIDPSLRLIWDLAFLGSSYVMWEMTTQVSHYYLAQLTSVRQ 223
DN G++ P + L+ LA++ Y++W+ +T+ + Y + ++ +V+Q
Sbjct: 124 DNFGNVSPEMTLVLHLAWVACGYIIWQNSTEDTWYKMVKIQTVKQ 168
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 37.7 bits (86), Expect = 0.008
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 13/58 (22%)
Query: 11 PWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPR--RLLQQAARAA 66
P SGP+ P P AP A P + P P +P+D G PR R L AARAA
Sbjct: 455 PRSGPQSPAPAAP-----------AQPGATLAPPTPPRPRDGGTPRHSRALSWAARAA 501
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 35.0 bits (79), Expect = 0.053
Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 17/136 (12%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLA-----LLLLLAPVAAPAGSGDPDDPGQPQDAGVPRR 57
PRR P P GP + +A LL A AA +G G +D G+P R
Sbjct: 40 PRRTAPPPPGHASAGPAAMSSHIAKSESKTSLLKAAAAAASGGSRAPRHGPARDPGLPSR 99
Query: 58 LLQQAARAALHFFNFRSGSPSALRVLA------EVQEGRAWINPKEGCKVHVVF--STER 109
L + A SG PS+ R L E G + P+ C+ + R
Sbjct: 100 RLPGSCPATPQ----SSGDPSSRRPLCRPAPREEGARGSQRVLPQAHCRPREALPAAASR 155
Query: 110 YNPESLLQEGEGRLGK 125
+P S L GR G+
Sbjct: 156 PSPSSPLPPARGRDGE 171
>gi|5453810 netrin 3 [Homo sapiens]
Length = 580
Score = 35.0 bits (79), Expect = 0.053
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 12/53 (22%)
Query: 7 RLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSG-------DPDDPGQPQDA 52
RLPAP +GP GP P A L AP+A P GSG D PG D+
Sbjct: 160 RLPAPANGPAGPGPEA-----LCFPAPLAQPDGSGLLAFSMQDSSPPGLDLDS 207
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 34.3 bits (77), Expect = 0.090
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 14 GPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVP 55
G G + +A L L LL P P +G P DPG P GVP
Sbjct: 2566 GEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVP 2607
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 34.3 bits (77), Expect = 0.090
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQA 62
P R P P + P GP L + PAG G+P+ PG P A P +QA
Sbjct: 56 PSRPCAPEPAASPAGPEEPGEPAGL----GELGEPAGPGEPEGPGDP--AAAPAEAEEQA 109
Query: 63 ARA 65
A
Sbjct: 110 VEA 112
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 34.3 bits (77), Expect = 0.090
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQA 62
P R P P + P GP L + PAG G+P+ PG P A P +QA
Sbjct: 56 PSRPCAPEPAASPAGPEEPGEPAGL----GELGEPAGPGEPEGPGDP--AAAPAEAEEQA 109
Query: 63 ARA 65
A
Sbjct: 110 VEA 112
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 34.3 bits (77), Expect = 0.090
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQA 62
P R P P + P GP L + PAG G+P+ PG P A P +QA
Sbjct: 56 PSRPCAPEPAASPAGPEEPGEPAGL----GELGEPAGPGEPEGPGDP--AAAPAEAEEQA 109
Query: 63 ARA 65
A
Sbjct: 110 VEA 112
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 33.5 bits (75), Expect = 0.15
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 17 GPRPTAPLLALLLLLAPVAAPAGS---GDPDDPGQPQDAGVP 55
GPR APLL LLLLL + A AG+ G P PG P G P
Sbjct: 3 GPRACAPLL-LLLLLGELLAAAGAQRVGLPGPPGPPGPPGKP 43
>gi|20070228 nucleobindin 1 [Homo sapiens]
Length = 461
Score = 33.5 bits (75), Expect = 0.15
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 11 PWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQP 49
P SGPRG PLL LLLL A +A P G P+ P
Sbjct: 2 PPSGPRGTLLLLPLLLLLLLRAVLAVPLERGAPNKEETP 40
>gi|72534680 sex comb on midleg 1 isoform 1 [Homo sapiens]
Length = 660
Score = 32.7 bits (73), Expect = 0.26
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 16/193 (8%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGS-GDPDDPGQPQDAGVPRRLLQQ 61
P + P + RGP+P + LL P A+P S +PD PQDA Q
Sbjct: 296 PSKTAEPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTSTVPQDAATIPSSAMQ 355
Query: 62 AARAALHFFNFRSGSPSALRVLAEVQE-------GRAWINPKEGCKVHVVFSTERYNPES 114
A ++ ++GS +VQ+ RA + ++ + + + + S
Sbjct: 356 APTVCIYL--NKNGSTGPHLDKKKVQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFS 413
Query: 115 LLQEGEGRLGKCSARVFFKNQKP--RPTIN--VTCTRLIEKKKRQQEDYLLYKQMKQLKN 170
L++G G G+ + VF + Q P +N R +EK L+ +
Sbjct: 414 FLKQGHG--GEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQT 471
Query: 171 PLEIVSIPDNHGH 183
L + +I +H H
Sbjct: 472 HLSLTAIEYSHSH 484
>gi|6912642 sex comb on midleg 1 isoform 2 [Homo sapiens]
Length = 591
Score = 32.7 bits (73), Expect = 0.26
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 16/193 (8%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGS-GDPDDPGQPQDAGVPRRLLQQ 61
P + P + RGP+P + LL P A+P S +PD PQDA Q
Sbjct: 249 PSKTAEPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTSTVPQDAATIPSSAMQ 308
Query: 62 AARAALHFFNFRSGSPSALRVLAEVQE-------GRAWINPKEGCKVHVVFSTERYNPES 114
A ++ ++GS +VQ+ RA + ++ + + + + S
Sbjct: 309 APTVCIYL--NKNGSTGPHLDKKKVQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFS 366
Query: 115 LLQEGEGRLGKCSARVFFKNQKP--RPTIN--VTCTRLIEKKKRQQEDYLLYKQMKQLKN 170
L++G G G+ + VF + Q P +N R +EK L+ +
Sbjct: 367 FLKQGHG--GEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQT 424
Query: 171 PLEIVSIPDNHGH 183
L + +I +H H
Sbjct: 425 HLSLTAIEYSHSH 437
>gi|153792351 ADAM metallopeptidase with thrombospondin type 1
motif, 8 preproprotein [Homo sapiens]
Length = 889
Score = 32.7 bits (73), Expect = 0.26
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 8 LPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQAARAAL 67
LPAP + P P L LLLLL A P GQ + VP RL A AL
Sbjct: 2 LPAPAA------PRWPPLLLLLLLLLPLARGAPARPAAGGQASELVVPTRLPGSAGELAL 55
Query: 68 HFFNFRSG 75
H F G
Sbjct: 56 HLSAFGKG 63
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 32.3 bits (72), Expect = 0.34
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 3 PRRQRLPAPWSGPRGPR------PTAPLLALLLLLAPVAAPAGSGDPDDP 46
P QR P+PW G G R P P L LL PV +P + P+DP
Sbjct: 934 PPTQRPPSPWPGGAGSRRGFSRPPPVPENPFLQLLGPVPSP--TLQPEDP 981
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 32.3 bits (72), Expect = 0.34
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 11 PWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVP 55
P S P GP P P + L + PVA P P PG P G+P
Sbjct: 351 PSSAPSGPPPPPPSV---LGVGPVAPPPPPPPPPPPGPPPPPGLP 392
>gi|31377697 glycosyltransferase 25 domain containing 1 [Homo
sapiens]
Length = 622
Score = 32.3 bits (72), Expect = 0.34
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 10 APWSGPRGPRPTAPLLALLLLLAPVAAPAGSGD--PDDPGQPQD-AGVPRRLLQQAARAA 66
AP +G R +P LL LLL P AP G+ P++ P+ PR L+ AR A
Sbjct: 4 APRAGRRRGQPLLALLLLLLAPLPPGAPPGADAYFPEERWSPESPLQAPRVLIALLARNA 63
Query: 67 LHFFNFRSGSPSALR 81
H G+ LR
Sbjct: 64 AHALPTTLGALERLR 78
>gi|46411172 muscleblind-like 1 isoform f [Homo sapiens]
Length = 340
Score = 32.3 bits (72), Expect = 0.34
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSG 41
P++Q LP + + P+PT+P+L LL + PA +G
Sbjct: 282 PQQQHLPQVFPSLQQPQPTSPILDASTLLGATSCPAAAG 320
>gi|139394668 TBC1 domain family, member 9 (with GRAM domain) [Homo
sapiens]
Length = 1266
Score = 32.0 bits (71), Expect = 0.45
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 92 WINPKEGCKVHVVFSTERYNPESLLQEGEGRLG 124
W+NP+E + ++ TER NP +LQ +G G
Sbjct: 2 WVNPEEVLLANALWITERANPYFILQRRKGHAG 34
>gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens]
Length = 454
Score = 31.6 bits (70), Expect = 0.59
Identities = 33/120 (27%), Positives = 42/120 (35%), Gaps = 20/120 (16%)
Query: 1 MQPRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQ 60
M P +Q P P +G P+ P P G G P PGQP A +
Sbjct: 1 MDPGQQPPPQPAPQGQGQPPSQP-------------PQGQGPPSGPGQPAPAAT--QAAP 45
Query: 61 QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE 120
QA A + R S + L L A +NPK V R P+S + E
Sbjct: 46 QAPPAGHQIVHVRGDSETDLEALF-----NAVMNPKTANVPQTVPMRLRKLPDSFFKPPE 100
>gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo
sapiens]
Length = 504
Score = 31.6 bits (70), Expect = 0.59
Identities = 33/120 (27%), Positives = 42/120 (35%), Gaps = 20/120 (16%)
Query: 1 MQPRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQ 60
M P +Q P P +G P+ P P G G P PGQP A +
Sbjct: 1 MDPGQQPPPQPAPQGQGQPPSQP-------------PQGQGPPSGPGQPAPAAT--QAAP 45
Query: 61 QAARAALHFFNFRSGSPSALRVLAEVQEGRAWINPKEGCKVHVVFSTERYNPESLLQEGE 120
QA A + R S + L L A +NPK V R P+S + E
Sbjct: 46 QAPPAGHQIVHVRGDSETDLEALF-----NAVMNPKTANVPQTVPMRLRKLPDSFFKPPE 100
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 31.6 bits (70), Expect = 0.59
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 21/162 (12%)
Query: 15 PRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQAARAALHFFNF-- 72
P R T P+ L LAP +A A +P G+PQ A ++ R N
Sbjct: 1204 PSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQ-AKFLEAFFEEPPRRQSPVSNLGS 1262
Query: 73 -----RSGSPSALRVLAEVQEGRAWINPKEGCKVHVVF--STERYNPESLLQEGEGRLGK 125
SG+ S + LAE AW EGC+ ++F S + + P S + + G
Sbjct: 1263 EGECPSSGAGSQAQELAE-----AW----EGCRKDLLFQKSPQNHRPPS-VSDQPGEKEN 1312
Query: 126 CSARVFFKNQKPRPTINVTCTRLIEKKKRQQEDYLLYKQMKQ 167
CS + ++ P P T +K+ QE L + ++Q
Sbjct: 1313 CSQHM-GTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQ 1353
>gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 31.6 bits (70), Expect = 0.59
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQA 62
P R R AP G GP + P LA P PA P PG P+R+ +
Sbjct: 250 PTRAR-GAPSPGVLGPHASEPQLA-----PPACTPAAPAVPGPPGPRSPQREPQRVSHEQ 303
Query: 63 ARAALHFFNFRSGSPSALRVLAEVQEGRAWI 93
RAAL S L ++ EG I
Sbjct: 304 FRAALQLVVDPGDPRSYLDNFIKIGEGSTGI 334
>gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens]
Length = 438
Score = 31.6 bits (70), Expect = 0.59
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQA 62
P R R AP G GP + P LA P PA P PG P+R+ +
Sbjct: 97 PTRAR-GAPSPGVLGPHASEPQLA-----PPACTPAAPAVPGPPGPRSPQREPQRVSHEQ 150
Query: 63 ARAALHFFNFRSGSPSALRVLAEVQEGRAWI 93
RAAL S L ++ EG I
Sbjct: 151 FRAALQLVVDPGDPRSYLDNFIKIGEGSTGI 181
>gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens]
Length = 438
Score = 31.6 bits (70), Expect = 0.59
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQA 62
P R R AP G GP + P LA P PA P PG P+R+ +
Sbjct: 97 PTRAR-GAPSPGVLGPHASEPQLA-----PPACTPAAPAVPGPPGPRSPQREPQRVSHEQ 150
Query: 63 ARAALHFFNFRSGSPSALRVLAEVQEGRAWI 93
RAAL S L ++ EG I
Sbjct: 151 FRAALQLVVDPGDPRSYLDNFIKIGEGSTGI 181
>gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 31.6 bits (70), Expect = 0.59
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQA 62
P R R AP G GP + P LA P PA P PG P+R+ +
Sbjct: 250 PTRAR-GAPSPGVLGPHASEPQLA-----PPACTPAAPAVPGPPGPRSPQREPQRVSHEQ 303
Query: 63 ARAALHFFNFRSGSPSALRVLAEVQEGRAWI 93
RAAL S L ++ EG I
Sbjct: 304 FRAALQLVVDPGDPRSYLDNFIKIGEGSTGI 334
>gi|5031975 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 31.6 bits (70), Expect = 0.59
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 3 PRRQRLPAPWSGPRGPRPTAPLLALLLLLAPVAAPAGSGDPDDPGQPQDAGVPRRLLQQA 62
P R R AP G GP + P LA P PA P PG P+R+ +
Sbjct: 250 PTRAR-GAPSPGVLGPHASEPQLA-----PPACTPAAPAVPGPPGPRSPQREPQRVSHEQ 303
Query: 63 ARAALHFFNFRSGSPSALRVLAEVQEGRAWI 93
RAAL S L ++ EG I
Sbjct: 304 FRAALQLVVDPGDPRSYLDNFIKIGEGSTGI 334
>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
Length = 1339
Score = 30.8 bits (68), Expect = 1.00
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 15/53 (28%)
Query: 9 PAPWSGPRG---------PRPTAPLLALLLLLAPV------AAPAGSGDPDDP 46
P P SG RG P P PLL L LLL P A A S +PD P
Sbjct: 10 PGPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLLPPPPLLAGATAAASREPDSP 62
>gi|46488917 astrotactin 2 isoform b [Homo sapiens]
Length = 1335
Score = 30.8 bits (68), Expect = 1.00
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 15/53 (28%)
Query: 9 PAPWSGPRG---------PRPTAPLLALLLLLAPV------AAPAGSGDPDDP 46
P P SG RG P P PLL L LLL P A A S +PD P
Sbjct: 10 PGPGSGLRGRPRLCFHPGPPPLLPLLLLFLLLLPPPPLLAGATAAASREPDSP 62
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,508,129
Number of Sequences: 37866
Number of extensions: 575571
Number of successful extensions: 3195
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 2928
Number of HSP's gapped (non-prelim): 325
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.