Guide to the Human Genome
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Name: LXN Sequence: fasta or formatted (222aa) NCBI GI: 194473714
Description:

latexin

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         12           2
 C cysteine            0.9          2           1
 D aspartate           3.6          8           2
 E glutamate           9.0         20           2
 F phenylalanine       3.2          7           1
 G glycine             4.1          9           1
 H histidine           3.2          7           1
 I isoleucine          6.3         14           2
 K lysine              6.8         15           1
 L leucine             6.3         14           2
 M methionine          2.7          6           1
 N asparagine          6.3         14           1
 P proline             6.3         14           2
 Q glutamine           8.6         19           2
 R arginine            2.7          6           1
 S serine              3.6          8           1
 T threonine           6.3         14           1
 V valine              8.1         18           1
 W tryptophan          2.3          5           1
 Y tyrosine            4.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   latexin 
RARRES1               0.227   retinoic acid receptor responder (tazarotene induced...
RARRES1               0.124   retinoic acid receptor responder (tazarotene induced...
SDCCAG8               0.007   serologically defined colon cancer antigen 8 
SLC6A12               0.007   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.007   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.007   solute carrier family 6 (neurotransmitter transport...
KLHL24                0.007   DRE1 protein 
SLC6A11               0.007   solute carrier family 6 (neurotransmitter transporter...
IL16                  0.007   interleukin 16 isoform 2 
BSCL2                 0.007   seipin isoform 1 
BSCL2                 0.007   seipin isoform 1 
BSCL2                 0.007   seipin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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